Wall clock time and date at job start Fri Apr 10 2020 18:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 111.00022 * 2 1 4 4 C 1.50708 * 109.46995 * 286.85678 * 3 2 1 5 5 O 1.21288 * 119.99839 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99934 * 179.97438 * 4 3 2 7 7 C 1.37095 * 119.99801 * 180.02562 * 6 4 3 8 8 H 1.08003 * 120.00208 * 0.02562 * 7 6 4 9 9 C 1.38950 * 120.00042 * 180.02562 * 7 6 4 10 10 N 1.31411 * 120.00052 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00247 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46983 * 59.99775 * 11 9 7 13 13 H 1.48498 * 109.47202 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46719 * 299.99925 * 11 9 7 15 15 C 1.46900 * 110.99586 * 123.95006 * 2 1 3 16 16 H 1.08996 * 109.47448 * 270.27121 * 15 2 1 17 17 C 1.53000 * 109.47087 * 30.27560 * 15 2 1 18 18 C 1.53003 * 109.47109 * 60.00005 * 17 15 2 19 19 C 1.52999 * 109.47304 * 59.99863 * 18 17 15 20 20 C 1.53000 * 109.47149 * 300.00112 * 19 18 17 21 21 C 1.52999 * 109.46941 * 150.27461 * 15 2 1 22 22 H 1.09005 * 109.47597 * 180.02562 * 21 15 2 23 23 S 1.81400 * 109.47195 * 59.99844 * 21 15 2 24 24 C 1.81406 * 101.92251 * 170.63186 * 23 21 15 25 25 O 1.42101 * 108.57749 * 56.14811 * 23 21 15 26 26 O 1.42105 * 108.57990 * 285.11808 * 23 21 15 27 27 H 1.08997 * 109.47184 * 301.47646 * 1 2 3 28 28 H 1.09001 * 109.46711 * 61.47617 * 1 2 3 29 29 H 1.08993 * 109.47207 * 181.47030 * 1 2 3 30 30 H 1.08998 * 109.47450 * 46.86013 * 3 2 1 31 31 H 1.09002 * 109.47264 * 166.86068 * 3 2 1 32 32 H 0.97001 * 119.99913 * 0.02562 * 6 4 3 33 33 H 0.96998 * 120.00125 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47264 * 299.99611 * 17 15 2 35 35 H 1.09005 * 109.46909 * 179.97438 * 17 15 2 36 36 H 1.09001 * 109.46914 * 299.99881 * 18 17 15 37 37 H 1.09005 * 109.46718 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.46773 * 180.02562 * 19 18 17 39 39 H 1.09001 * 109.47120 * 60.00144 * 19 18 17 40 40 H 1.08997 * 109.46676 * 299.99881 * 20 19 18 41 41 H 1.09000 * 109.47264 * 180.02562 * 20 19 18 42 42 H 1.09004 * 109.46547 * 59.99936 * 24 23 21 43 43 H 1.08999 * 109.47234 * 179.97438 * 24 23 21 44 44 H 1.08991 * 109.46857 * 300.00121 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7908 1.9880 -1.3598 5 8 1.2584 1.3481 -2.2420 6 7 2.1986 3.2509 -1.5954 7 6 2.0119 3.8119 -2.8323 8 1 1.5378 3.2422 -3.6178 9 6 2.4327 5.1137 -3.0753 10 7 3.0101 5.8068 -2.1198 11 14 2.1778 5.8785 -4.7604 12 1 0.7273 5.9052 -5.0776 13 1 2.7107 7.2646 -4.7607 14 1 2.8933 5.0734 -5.7828 15 6 1.9954 -0.7659 1.1377 16 1 2.1210 -0.1039 1.9944 17 6 1.0151 -1.8844 1.4967 18 6 0.8388 -2.8137 0.2941 19 6 2.1910 -3.4222 -0.0827 20 6 3.1714 -2.3038 -0.4418 21 6 3.3476 -1.3745 0.7608 22 1 3.7381 -1.9432 1.6048 23 16 4.5099 -0.0484 0.3350 24 6 6.0787 -0.9507 0.2110 25 8 4.5909 0.8519 1.4314 26 8 4.1731 0.4531 -0.9513 27 1 -0.3633 0.5366 0.8764 28 1 -0.3633 0.4908 -0.9030 29 1 -0.3633 -1.0272 0.0264 30 1 1.4697 1.9625 0.7498 31 1 3.0600 1.3520 0.2336 32 1 2.6240 3.7627 -0.8898 33 1 3.3035 6.7157 -2.2893 34 1 0.0517 -1.4509 1.7652 35 1 1.4059 -2.4530 2.3406 36 1 0.4482 -2.2453 -0.5500 37 1 0.1400 -3.6102 0.5498 38 1 2.0655 -4.0838 -0.9398 39 1 2.5816 -3.9906 0.7614 40 1 2.7807 -1.7355 -1.2859 41 1 4.1346 -2.7373 -0.7107 42 1 5.9985 -1.7141 -0.5630 43 1 6.8782 -0.2558 -0.0460 44 1 6.3019 -1.4244 1.1668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245417433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:20 Heat of formation + Delta-G solvation = -67.455356 kcal Electronic energy + Delta-G solvation = -27357.900541 eV Core-core repulsion = 23632.240683 eV Total energy + Delta-G solvation = -3725.659858 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.93287 -37.77944 -36.78135 -35.99666 -34.89181 -33.55464 -31.71269 -30.99094 -29.97842 -29.64268 -27.45583 -25.16413 -23.83086 -23.02687 -21.63741 -19.46629 -19.03806 -18.61729 -17.67138 -17.04614 -16.65561 -15.82078 -15.68517 -15.40973 -14.90338 -14.61155 -14.37334 -14.09805 -13.78315 -13.65564 -13.31941 -13.22233 -13.17066 -13.04124 -12.40173 -12.18575 -12.15421 -11.88690 -11.76459 -11.73979 -11.46555 -11.34323 -11.30110 -11.19264 -11.03730 -10.87205 -10.40395 -10.39066 -10.30626 -10.18752 -10.01445 -9.76895 -9.25930 -8.33974 -7.79644 -7.70511 -6.20441 -3.59688 0.09160 2.84283 3.33087 3.36673 3.41623 3.71732 3.82013 4.12258 4.17667 4.34581 4.41088 4.54530 4.69064 4.75590 4.90281 5.02423 5.10806 5.15704 5.19124 5.27745 5.33952 5.41022 5.50557 5.54790 5.63681 5.67442 5.76888 5.79555 5.85670 5.98540 6.00759 6.05837 6.12424 6.25627 6.44477 6.51086 6.54412 7.21296 7.29571 7.74382 8.28158 8.86221 9.40395 9.79923 10.33276 10.98193 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017554 B = 0.004748 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.685523 B = 5895.695973 C = 6681.511055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.509 5.509 3 C 0.030 3.970 4 C 0.475 3.525 5 O -0.573 6.573 6 N -0.568 5.568 7 C -0.289 4.289 8 H 0.101 0.899 9 C 0.018 3.982 10 N -0.906 5.906 11 Si 0.929 3.071 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.095 3.905 16 H 0.062 0.938 17 C -0.111 4.111 18 C -0.127 4.127 19 C -0.103 4.103 20 C -0.101 4.101 21 C -0.554 4.554 22 H 0.128 0.872 23 S 2.406 3.594 24 C -0.666 4.666 25 O -0.946 6.946 26 O -0.892 6.892 27 H 0.018 0.982 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.390 0.610 33 H 0.269 0.731 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.967 -18.320 10.294 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.234 5.234 3 C -0.101 4.101 4 C 0.260 3.740 5 O -0.456 6.456 6 N -0.205 5.205 7 C -0.419 4.419 8 H 0.119 0.881 9 C -0.183 4.183 10 N -0.549 5.549 11 Si 0.757 3.243 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.200 1.200 15 C -0.015 4.015 16 H 0.080 0.920 17 C -0.150 4.150 18 C -0.164 4.164 19 C -0.142 4.142 20 C -0.139 4.139 21 C -0.664 4.664 22 H 0.146 0.854 23 S 2.588 3.412 24 C -0.814 4.814 25 O -0.943 6.943 26 O -0.889 6.889 27 H 0.037 0.963 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.223 0.777 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.714 -17.865 9.130 20.136 hybrid contribution 0.469 0.355 0.707 0.920 sum 2.183 -17.509 9.838 20.202 Atomic orbital electron populations 1.22806 0.86159 1.02549 1.01879 1.61650 1.09351 1.12615 1.39787 1.22434 0.99672 0.89281 0.98727 1.19164 0.83876 0.82531 0.88458 1.90452 1.47488 1.61771 1.45936 1.41758 1.53678 1.11642 1.13458 1.19620 1.36277 0.96298 0.89674 0.88076 1.25219 0.97327 0.96558 0.99168 1.69623 1.41130 1.11293 1.32806 0.85953 0.78576 0.77708 0.82110 1.20111 1.21166 1.20047 1.21338 0.92008 0.95551 0.92586 0.92011 1.21692 0.98805 0.96025 0.98441 1.21749 0.97160 0.98474 0.99057 1.21361 0.95320 0.96735 1.00782 1.21338 1.00019 0.96197 0.96346 1.30153 1.11747 1.16348 1.08183 0.85371 1.08816 0.77840 0.77798 0.76748 1.30349 1.24081 1.16023 1.10976 1.93603 1.86238 1.58986 1.55508 1.93830 1.80878 1.75127 1.39060 0.96306 0.89194 0.90006 0.93029 0.91275 0.77702 0.92103 0.90812 0.91446 0.89261 0.92336 0.91599 0.92585 0.87237 0.91945 0.85303 0.85371 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 7.60 60.07 0.46 0.66 16 2 N -0.51 -8.61 2.91 -236.33 -0.69 -9.30 16 3 C 0.03 0.62 4.11 -4.97 -0.02 0.60 16 4 C 0.47 12.29 6.66 -10.98 -0.07 12.22 16 5 O -0.57 -16.18 14.47 5.55 0.08 -16.10 16 6 N -0.57 -15.93 5.29 -10.96 -0.06 -15.98 16 7 C -0.29 -8.61 9.68 -14.93 -0.14 -8.75 16 8 H 0.10 3.11 7.16 -52.48 -0.38 2.73 16 9 C 0.02 0.51 5.50 -17.47 -0.10 0.41 16 10 N -0.91 -26.34 13.05 55.50 0.72 -25.62 16 11 Si 0.93 22.22 29.55 -169.99 -5.02 17.20 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.10 1.23 2.18 -67.71 -0.15 1.09 16 16 H 0.06 0.80 7.80 -51.93 -0.41 0.40 16 17 C -0.11 -1.11 4.86 -26.73 -0.13 -1.24 16 18 C -0.13 -1.25 5.19 -26.73 -0.14 -1.39 16 19 C -0.10 -0.94 5.92 -26.73 -0.16 -1.10 16 20 C -0.10 -1.09 4.81 -26.73 -0.13 -1.22 16 21 C -0.55 -6.17 2.32 -26.73 -0.06 -6.23 16 22 H 0.13 0.93 8.14 -51.92 -0.42 0.50 16 23 S 2.41 34.05 3.41 -107.50 -0.37 33.68 16 24 C -0.67 -6.11 10.41 101.05 1.05 -5.06 16 25 O -0.95 -16.03 16.76 -57.83 -0.97 -17.00 16 26 O -0.89 -17.36 13.97 -57.83 -0.81 -18.17 16 27 H 0.02 0.26 8.01 -51.93 -0.42 -0.15 16 28 H 0.09 1.70 6.54 -51.93 -0.34 1.36 16 29 H 0.08 1.03 3.97 -51.93 -0.21 0.82 16 30 H 0.05 0.99 7.99 -51.93 -0.41 0.57 16 31 H 0.07 1.41 2.50 -25.40 -0.06 1.34 16 32 H 0.39 10.73 7.90 -40.82 -0.32 10.41 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 0.71 6.48 -51.93 -0.34 0.37 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 1.07 5.64 -51.93 -0.29 0.78 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.11 1.58 7.34 -51.93 -0.38 1.20 16 41 H 0.06 0.50 7.05 -51.93 -0.37 0.14 16 42 H 0.13 0.94 7.20 -51.92 -0.37 0.56 16 43 H 0.13 1.16 8.14 -51.92 -0.42 0.74 16 44 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 340.88 15.07 5.14 5.14 Total: -1.00 -37.21 340.88 -7.95 -45.16 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.39 Total: 11.02 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 0.41 Total: -10.03 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.02 Total: -50.90 kcal Atomic # 8 Polarization: -49.57 SS G_CDS: -1.70 Total: -51.27 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 34.05 SS G_CDS: -0.37 Total: 33.68 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -37.21 -7.95 -45.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245417433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.297 kcal (2) G-P(sol) polarization free energy of solvation -37.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds