Wall clock time and date at job start Fri Apr 10 2020 18:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 111.00022 * 2 1 4 4 C 1.50708 * 109.46995 * 286.85678 * 3 2 1 5 5 O 1.21288 * 119.99839 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99934 * 179.97438 * 4 3 2 7 7 C 1.37095 * 119.99801 * 180.02562 * 6 4 3 8 8 H 1.08003 * 120.00208 * 0.02562 * 7 6 4 9 9 C 1.38950 * 120.00042 * 180.02562 * 7 6 4 10 10 N 1.31411 * 120.00052 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00247 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46983 * 59.99775 * 11 9 7 13 13 H 1.48498 * 109.47202 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46719 * 299.99925 * 11 9 7 15 15 C 1.46900 * 110.99586 * 123.95006 * 2 1 3 16 16 H 1.08996 * 109.47448 * 270.27121 * 15 2 1 17 17 C 1.53000 * 109.47087 * 30.27560 * 15 2 1 18 18 C 1.53003 * 109.47109 * 60.00005 * 17 15 2 19 19 C 1.52999 * 109.47304 * 59.99863 * 18 17 15 20 20 C 1.53000 * 109.47149 * 300.00112 * 19 18 17 21 21 C 1.52999 * 109.46941 * 150.27461 * 15 2 1 22 22 H 1.09005 * 109.47597 * 180.02562 * 21 15 2 23 23 S 1.81400 * 109.47195 * 59.99844 * 21 15 2 24 24 C 1.81406 * 101.92251 * 170.63186 * 23 21 15 25 25 O 1.42101 * 108.57749 * 56.14811 * 23 21 15 26 26 O 1.42105 * 108.57990 * 285.11808 * 23 21 15 27 27 H 1.08997 * 109.47184 * 301.47646 * 1 2 3 28 28 H 1.09001 * 109.46711 * 61.47617 * 1 2 3 29 29 H 1.08993 * 109.47207 * 181.47030 * 1 2 3 30 30 H 1.08998 * 109.47450 * 46.86013 * 3 2 1 31 31 H 1.09002 * 109.47264 * 166.86068 * 3 2 1 32 32 H 0.97001 * 119.99913 * 0.02562 * 6 4 3 33 33 H 0.96998 * 120.00125 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47264 * 299.99611 * 17 15 2 35 35 H 1.09005 * 109.46909 * 179.97438 * 17 15 2 36 36 H 1.09001 * 109.46914 * 299.99881 * 18 17 15 37 37 H 1.09005 * 109.46718 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.46773 * 180.02562 * 19 18 17 39 39 H 1.09001 * 109.47120 * 60.00144 * 19 18 17 40 40 H 1.08997 * 109.46676 * 299.99881 * 20 19 18 41 41 H 1.09000 * 109.47264 * 180.02562 * 20 19 18 42 42 H 1.09004 * 109.46547 * 59.99936 * 24 23 21 43 43 H 1.08999 * 109.47234 * 179.97438 * 24 23 21 44 44 H 1.08991 * 109.46857 * 300.00121 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7908 1.9880 -1.3598 5 8 1.2584 1.3481 -2.2420 6 7 2.1986 3.2509 -1.5954 7 6 2.0119 3.8119 -2.8323 8 1 1.5378 3.2422 -3.6178 9 6 2.4327 5.1137 -3.0753 10 7 3.0101 5.8068 -2.1198 11 14 2.1778 5.8785 -4.7604 12 1 0.7273 5.9052 -5.0776 13 1 2.7107 7.2646 -4.7607 14 1 2.8933 5.0734 -5.7828 15 6 1.9954 -0.7659 1.1377 16 1 2.1210 -0.1039 1.9944 17 6 1.0151 -1.8844 1.4967 18 6 0.8388 -2.8137 0.2941 19 6 2.1910 -3.4222 -0.0827 20 6 3.1714 -2.3038 -0.4418 21 6 3.3476 -1.3745 0.7608 22 1 3.7381 -1.9432 1.6048 23 16 4.5099 -0.0484 0.3350 24 6 6.0787 -0.9507 0.2110 25 8 4.5909 0.8519 1.4314 26 8 4.1731 0.4531 -0.9513 27 1 -0.3633 0.5366 0.8764 28 1 -0.3633 0.4908 -0.9030 29 1 -0.3633 -1.0272 0.0264 30 1 1.4697 1.9625 0.7498 31 1 3.0600 1.3520 0.2336 32 1 2.6240 3.7627 -0.8898 33 1 3.3035 6.7157 -2.2893 34 1 0.0517 -1.4509 1.7652 35 1 1.4059 -2.4530 2.3406 36 1 0.4482 -2.2453 -0.5500 37 1 0.1400 -3.6102 0.5498 38 1 2.0655 -4.0838 -0.9398 39 1 2.5816 -3.9906 0.7614 40 1 2.7807 -1.7355 -1.2859 41 1 4.1346 -2.7373 -0.7107 42 1 5.9985 -1.7141 -0.5630 43 1 6.8782 -0.2558 -0.0460 44 1 6.3019 -1.4244 1.1668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245417433.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:20 Heat of formation + Delta-G solvation = -98.068074 kcal Electronic energy + Delta-G solvation = -27359.228008 eV Core-core repulsion = 23632.240683 eV Total energy + Delta-G solvation = -3726.987325 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.10958 -39.61768 -37.94807 -37.22934 -36.25604 -35.57825 -33.21750 -32.56028 -31.01399 -30.49100 -28.91650 -26.89268 -25.40459 -23.90540 -22.59193 -21.12865 -20.34989 -19.84435 -19.71497 -18.21739 -17.80036 -17.52312 -16.74889 -16.72553 -16.44408 -15.90738 -15.85496 -15.57900 -15.30215 -14.90787 -14.58518 -14.38376 -14.01174 -13.90609 -13.76979 -13.53324 -13.47484 -13.16239 -13.05787 -12.95250 -12.91892 -12.85773 -12.44009 -12.41600 -12.38759 -12.28136 -12.10569 -11.91044 -11.48444 -11.39430 -11.21343 -11.14953 -10.65588 -10.25764 -9.95042 -9.24096 -8.41207 -5.90170 -0.89917 1.39152 1.41158 1.52513 1.88548 2.13826 2.30123 2.62249 2.74877 3.13253 3.22810 3.33638 3.54100 3.70323 3.89211 3.99687 4.04736 4.13568 4.18957 4.25781 4.29854 4.37045 4.43427 4.50442 4.50682 4.55588 4.66501 4.79447 4.89188 4.97521 5.05321 5.11338 5.27611 5.32058 5.39148 5.42699 5.43709 5.70862 5.81206 6.04285 6.12392 6.65216 7.17735 7.61611 8.18801 8.77555 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017554 B = 0.004748 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.685523 B = 5895.695973 C = 6681.511055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.519 5.519 3 C 0.036 3.964 4 C 0.473 3.527 5 O -0.604 6.604 6 N -0.584 5.584 7 C -0.328 4.328 8 H 0.080 0.920 9 C -0.021 4.021 10 N -0.929 5.929 11 Si 0.999 3.001 12 H -0.268 1.268 13 H -0.269 1.269 14 H -0.273 1.273 15 C 0.082 3.918 16 H 0.062 0.938 17 C -0.106 4.106 18 C -0.131 4.131 19 C -0.100 4.100 20 C -0.106 4.106 21 C -0.533 4.533 22 H 0.184 0.816 23 S 2.368 3.632 24 C -0.641 4.641 25 O -0.991 6.991 26 O -0.966 6.966 27 H 0.031 0.969 28 H 0.046 0.954 29 H 0.115 0.885 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.388 0.612 33 H 0.276 0.724 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.154 0.846 43 H 0.128 0.872 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.864 -21.304 11.930 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.244 5.244 3 C -0.095 4.095 4 C 0.260 3.740 5 O -0.488 6.488 6 N -0.221 5.221 7 C -0.457 4.457 8 H 0.098 0.902 9 C -0.220 4.220 10 N -0.571 5.571 11 Si 0.822 3.178 12 H -0.193 1.193 13 H -0.193 1.193 14 H -0.198 1.198 15 C -0.027 4.027 16 H 0.080 0.920 17 C -0.145 4.145 18 C -0.168 4.168 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.645 4.645 22 H 0.201 0.799 23 S 2.559 3.441 24 C -0.793 4.793 25 O -0.988 6.988 26 O -0.963 6.963 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.133 0.867 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.221 0.779 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.172 0.828 43 H 0.147 0.853 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.594 -20.806 10.786 23.579 hybrid contribution 0.239 1.132 0.248 1.183 sum 2.832 -19.673 11.034 22.734 Atomic orbital electron populations 1.22802 0.85877 1.04305 1.00219 1.61587 1.09797 1.10368 1.42651 1.22279 1.00727 0.91544 0.94990 1.20102 0.81943 0.81640 0.90318 1.90406 1.48420 1.62268 1.47745 1.41894 1.54571 1.12598 1.13067 1.19655 1.38338 0.97391 0.90308 0.90190 1.26140 0.96214 0.96257 1.03351 1.69713 1.41023 1.11732 1.34644 0.84922 0.78820 0.77235 0.76865 1.19335 1.19320 1.19786 1.21652 0.93853 0.96244 0.90969 0.91982 1.21746 0.98189 0.95026 0.99502 1.21758 0.98362 0.98803 0.97847 1.21394 0.94133 0.96038 1.02291 1.21396 1.02219 0.96264 0.94531 1.30017 1.09447 1.14728 1.10324 0.79859 1.09213 0.80460 0.79481 0.74897 1.30089 1.19148 1.15785 1.14300 1.93539 1.87371 1.62160 1.55716 1.93758 1.82961 1.78028 1.41558 0.95030 0.93549 0.86719 0.92409 0.90513 0.77944 0.91452 0.90555 0.87951 0.92471 0.90003 0.91185 0.89233 0.91952 0.88667 0.82786 0.85300 0.81889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.48 7.60 127.69 0.97 1.45 16 2 N -0.52 -18.03 2.91 -901.62 -2.63 -20.66 16 3 C 0.04 1.57 4.11 85.56 0.35 1.92 16 4 C 0.47 26.31 6.66 87.66 0.58 26.89 16 5 O -0.60 -36.72 14.47 -3.05 -0.04 -36.76 16 6 N -0.58 -35.03 5.29 -306.98 -1.62 -36.65 16 7 C -0.33 -20.66 9.68 84.04 0.81 -19.85 16 8 H 0.08 5.26 7.16 -2.91 -0.02 5.24 16 9 C -0.02 -1.26 5.50 84.93 0.47 -0.79 16 10 N -0.93 -55.43 13.05 21.66 0.28 -55.15 16 11 Si 1.00 46.52 29.55 68.60 2.03 48.55 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 14 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 15 C 0.08 1.98 2.18 44.92 0.10 2.07 16 16 H 0.06 1.51 7.80 -2.39 -0.02 1.50 16 17 C -0.11 -1.72 4.86 30.60 0.15 -1.57 16 18 C -0.13 -2.16 5.19 30.59 0.16 -2.00 16 19 C -0.10 -1.40 5.92 30.59 0.18 -1.22 16 20 C -0.11 -2.01 4.81 30.60 0.15 -1.86 16 21 C -0.53 -10.28 2.32 30.59 0.07 -10.21 16 22 H 0.18 1.51 8.14 -2.39 -0.02 1.49 16 23 S 2.37 66.18 3.41 -56.49 -0.19 65.99 16 24 C -0.64 -9.58 10.41 113.37 1.18 -8.40 16 25 O -0.99 -34.10 16.76 -127.37 -2.14 -36.23 16 26 O -0.97 -39.92 13.97 -127.37 -1.78 -41.70 16 27 H 0.03 0.90 8.01 -2.39 -0.02 0.89 16 28 H 0.05 1.88 6.54 -2.39 -0.02 1.87 16 29 H 0.11 2.86 3.97 -2.39 -0.01 2.86 16 30 H 0.06 2.36 7.99 -2.39 -0.02 2.34 16 31 H 0.08 3.32 2.50 -19.25 -0.05 3.27 16 32 H 0.39 22.92 7.90 -92.71 -0.73 22.18 16 33 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.08 1.22 6.48 -2.39 -0.02 1.20 16 35 H 0.10 1.03 8.14 -2.38 -0.02 1.02 16 36 H 0.06 1.32 5.64 -2.39 -0.01 1.31 16 37 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 1.83 7.34 -2.39 -0.02 1.82 16 41 H 0.09 1.15 7.05 -2.39 -0.02 1.13 16 42 H 0.15 1.58 7.20 -2.39 -0.02 1.56 16 43 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -89.75 340.88 -0.67 -90.42 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: 0.25 Total: 35.76 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 5.17 Total: -13.57 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -3.97 Total: -112.46 kcal Atomic # 8 Polarization: -110.73 SS G_CDS: -3.96 Total: -114.69 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Atomic # 16 Polarization: 66.18 SS G_CDS: -0.19 Total: 65.99 kcal Total: -89.75 -0.67 -90.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245417433.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.650 kcal (2) G-P(sol) polarization free energy of solvation -89.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds