Wall clock time and date at job start Fri Apr 10 2020 18:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00169 * 2 1 4 4 C 1.50703 * 109.47233 * 80.93281 * 3 2 1 5 5 H 1.07997 * 119.99815 * 3.64992 * 4 3 2 6 6 C 1.37878 * 120.00264 * 183.64530 * 4 3 2 7 7 N 1.31511 * 119.99863 * 174.79114 * 6 4 3 8 8 Si 1.86797 * 120.00060 * 354.79644 * 6 4 3 9 9 H 1.48509 * 109.46962 * 269.99710 * 8 6 4 10 10 H 1.48507 * 109.47157 * 29.99409 * 8 6 4 11 11 H 1.48499 * 109.47523 * 149.99496 * 8 6 4 12 12 S 1.65603 * 119.99910 * 180.02562 * 2 1 3 13 13 O 1.42102 * 106.40101 * 20.26103 * 12 2 1 14 14 O 1.42103 * 106.40013 * 153.18133 * 12 2 1 15 15 N 1.65600 * 107.21458 * 266.72166 * 12 2 1 16 16 C 1.46502 * 119.99633 * 95.85913 * 15 12 2 17 17 C 1.52999 * 109.47412 * 101.24503 * 16 15 12 18 18 H 1.09003 * 110.45664 * 51.31016 * 17 16 15 19 19 C 1.54505 * 110.51234 * 173.91493 * 17 16 15 20 20 C 1.54479 * 104.05999 * 118.64417 * 19 17 16 21 21 O 1.44429 * 104.80268 * 23.98393 * 20 19 17 22 22 C 1.44643 * 105.36554 * 319.56103 * 21 20 19 23 23 C 1.46498 * 120.00211 * 275.84830 * 15 12 2 24 24 C 1.52995 * 117.50061 * 188.74711 * 23 15 12 25 25 C 1.53003 * 117.49502 * 120.08865 * 23 15 12 26 26 H 1.08998 * 109.47170 * 89.99890 * 1 2 3 27 27 H 1.08996 * 109.46992 * 209.99911 * 1 2 3 28 28 H 1.09003 * 109.46561 * 329.99872 * 1 2 3 29 29 H 1.09000 * 109.47161 * 320.93659 * 3 2 1 30 30 H 1.08993 * 109.47459 * 200.93576 * 3 2 1 31 31 H 0.97003 * 120.00053 * 180.02562 * 7 6 4 32 32 H 1.09010 * 109.46555 * 221.24124 * 16 15 12 33 33 H 1.08994 * 109.47384 * 341.24101 * 16 15 12 34 34 H 1.09004 * 110.51433 * 237.28914 * 19 17 16 35 35 H 1.08996 * 110.51266 * 359.86384 * 19 17 16 36 36 H 1.09007 * 110.37520 * 142.80946 * 20 19 17 37 37 H 1.08997 * 110.37565 * 265.14700 * 20 19 17 38 38 H 1.08998 * 110.34173 * 281.59769 * 22 21 20 39 39 H 1.09000 * 110.50484 * 159.19031 * 22 21 20 40 40 H 1.08994 * 115.55124 * 334.42726 * 23 15 12 41 41 H 1.09001 * 117.50106 * 0.02562 * 24 23 15 42 42 H 1.09008 * 117.49717 * 145.02196 * 24 23 15 43 43 H 1.09001 * 117.49858 * 214.98145 * 25 23 15 44 44 H 1.09000 * 117.49686 * 0.02562 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2548 1.8157 1.4031 5 1 1.8438 1.2447 2.2224 6 6 2.8321 3.0450 1.6407 7 7 2.7913 3.5685 2.8465 8 14 3.6719 3.9671 0.2501 9 1 5.1052 3.5822 0.1956 10 1 3.0177 3.6231 -1.0380 11 1 3.5605 5.4288 0.4869 12 16 2.2930 -1.4342 -0.0006 13 8 1.3861 -2.4209 -0.4732 14 8 3.5472 -1.1731 -0.6156 15 7 2.6164 -1.8141 1.5784 16 6 1.7281 -2.7204 2.3104 17 6 2.3571 -4.1139 2.3692 18 1 3.3817 -4.0542 2.7362 19 6 1.5152 -5.0505 3.2643 20 6 1.0644 -6.1775 2.3087 21 8 2.0467 -6.1786 1.2500 22 6 2.3187 -4.7842 0.9781 23 6 3.7908 -1.2441 2.2433 24 6 4.1520 -1.7869 3.6273 25 6 3.5513 -0.3860 3.4872 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3632 0.8900 0.5139 29 1 1.6882 1.9823 -0.6476 30 1 3.2104 1.1035 -0.3672 31 1 3.1971 4.4336 3.0136 32 1 1.5808 -2.3452 3.3232 33 1 0.7665 -2.7771 1.8005 34 1 2.1243 -5.4558 4.0724 35 1 0.6522 -4.5203 3.6668 36 1 1.0637 -7.1367 2.8267 37 1 0.0743 -5.9614 1.9075 38 1 1.5218 -4.3541 0.3715 39 1 3.2803 -4.6735 0.4768 40 1 4.6111 -0.9582 1.5850 41 1 3.5160 -2.5685 4.0431 42 1 5.2101 -1.8579 3.8798 43 1 4.2144 0.4642 3.6474 44 1 2.5200 -0.2460 3.8110 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255420413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:25 Heat of formation + Delta-G solvation = -83.475268 kcal Electronic energy + Delta-G solvation = -27312.347255 eV Core-core repulsion = 23585.992722 eV Total energy + Delta-G solvation = -3726.354534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.61531 -37.70177 -36.87518 -35.66223 -35.39381 -33.81696 -32.45193 -31.57209 -29.10935 -28.42050 -25.64331 -25.21599 -22.84948 -22.19065 -21.74649 -21.17397 -20.19150 -18.57119 -17.72055 -16.92373 -16.87373 -16.40979 -16.18439 -15.43166 -15.12725 -15.03082 -14.39990 -14.24254 -13.86704 -13.69523 -13.14665 -13.06644 -12.78949 -12.53727 -12.41874 -12.31219 -11.95888 -11.80799 -11.62292 -11.51229 -11.42358 -11.38792 -11.26513 -11.14853 -10.95543 -10.76748 -10.60509 -10.47284 -10.45158 -10.24928 -9.91499 -9.66724 -9.56105 -8.65300 -8.41133 -8.10465 -6.17328 -4.15932 1.07347 3.23343 3.25060 3.32251 3.35873 3.87971 4.02234 4.27091 4.33800 4.54688 4.66311 4.75959 4.89252 4.99434 5.15566 5.19860 5.31392 5.32970 5.38444 5.42532 5.49654 5.51727 5.63631 5.67067 5.70073 5.84292 5.89475 5.96048 5.97111 6.04733 6.13342 6.24785 6.41768 6.49265 6.69494 6.70042 6.79523 6.80262 6.94097 7.08864 7.33820 7.53606 8.40053 8.88485 9.44378 10.94422 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019892 B = 0.005109 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.232841 B = 5479.115746 C = 6100.819115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.990 5.990 3 C 0.213 3.787 4 C -0.534 4.534 5 H 0.086 0.914 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.862 3.138 9 H -0.273 1.273 10 H -0.265 1.265 11 H -0.286 1.286 12 S 2.786 3.214 13 O -0.991 6.991 14 O -0.980 6.980 15 N -0.974 5.974 16 C 0.133 3.867 17 C -0.142 4.142 18 H 0.093 0.907 19 C -0.148 4.148 20 C 0.045 3.955 21 O -0.379 6.379 22 C 0.032 3.968 23 C 0.090 3.910 24 C -0.200 4.200 25 C -0.150 4.150 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.134 0.866 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 -12.947 1.924 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.831 5.831 3 C 0.089 3.911 4 C -0.573 4.573 5 H 0.104 0.896 6 C -0.124 4.124 7 N -0.530 5.530 8 Si 0.689 3.311 9 H -0.198 1.198 10 H -0.189 1.189 11 H -0.212 1.212 12 S 2.796 3.204 13 O -0.975 6.975 14 O -0.964 6.964 15 N -0.808 5.808 16 C 0.006 3.994 17 C -0.162 4.162 18 H 0.112 0.888 19 C -0.186 4.186 20 C -0.032 4.032 21 O -0.298 6.298 22 C -0.045 4.045 23 C -0.017 4.017 24 C -0.239 4.239 25 C -0.190 4.190 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.151 0.849 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.562 -13.450 1.107 13.736 hybrid contribution 0.298 1.190 -0.032 1.228 sum -2.264 -12.259 1.075 12.513 Atomic orbital electron populations 1.21245 0.79576 1.02553 1.00665 1.57433 1.14424 1.22670 1.88574 1.19627 0.91823 0.80862 0.98775 1.21429 1.39463 1.03899 0.92460 0.89557 1.24786 0.95583 0.96840 0.95218 1.69886 1.44540 1.17982 1.20552 0.87081 0.81044 0.79425 0.83513 1.19842 1.18932 1.21166 1.01763 0.73106 0.72638 0.72909 1.93512 1.65897 1.58890 1.79195 1.93554 1.43127 1.85545 1.74145 1.57528 1.34137 1.57207 1.31978 1.21271 0.92280 0.87217 0.98600 1.23087 1.01548 0.95337 0.96270 0.88826 1.22938 1.00357 0.96684 0.98663 1.23380 0.92582 0.99129 0.88152 1.89113 1.60406 1.25019 1.55295 1.23945 1.02926 0.81220 0.96382 1.21329 0.89277 1.01729 0.89343 1.23430 1.01637 0.99276 0.99607 1.23191 1.02561 0.92693 1.00507 0.93702 0.92688 0.90390 0.94775 0.94207 0.92634 0.90210 0.89648 0.90572 0.90199 0.89445 0.92260 0.89006 0.89794 0.84854 0.88776 0.88811 0.87727 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.73 10.29 59.85 0.62 2.35 16 2 N -0.99 -19.32 3.24 -123.06 -0.40 -19.72 16 3 C 0.21 4.80 4.50 -5.19 -0.02 4.78 16 4 C -0.53 -13.20 9.54 -34.44 -0.33 -13.53 16 5 H 0.09 2.23 6.95 -52.49 -0.36 1.87 16 6 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.89 -24.58 13.96 55.43 0.77 -23.81 16 8 Si 0.86 20.11 27.51 -169.99 -4.68 15.44 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.26 -5.99 6.51 56.52 0.37 -5.62 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 S 2.79 52.31 6.01 -107.50 -0.65 51.66 16 13 O -0.99 -18.32 13.12 -57.17 -0.75 -19.07 16 14 O -0.98 -21.28 15.66 -57.17 -0.90 -22.18 16 15 N -0.97 -15.63 3.10 -107.30 -0.33 -15.96 16 16 C 0.13 1.74 4.01 -4.04 -0.02 1.72 16 17 C -0.14 -1.73 2.80 -89.06 -0.25 -1.98 16 18 H 0.09 1.14 6.42 -51.93 -0.33 0.80 16 19 C -0.15 -1.44 6.74 -25.17 -0.17 -1.61 16 20 C 0.04 0.47 7.64 37.93 0.29 0.76 16 21 O -0.38 -5.44 11.65 -35.23 -0.41 -5.85 16 22 C 0.03 0.46 6.73 37.93 0.26 0.71 16 23 C 0.09 1.47 6.36 -67.93 -0.43 1.04 16 24 C -0.20 -2.68 8.94 -26.70 -0.24 -2.92 16 25 C -0.15 -2.51 8.97 -26.69 -0.24 -2.75 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.78 7.70 -51.93 -0.40 0.38 16 28 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 29 H 0.03 0.77 7.17 -51.93 -0.37 0.40 16 30 H 0.04 0.94 6.37 -51.93 -0.33 0.61 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.08 0.95 6.90 -51.92 -0.36 0.59 16 33 H 0.09 1.10 7.02 -51.93 -0.36 0.73 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.66 7.73 -51.93 -0.40 0.26 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.44 5.37 -51.93 -0.28 1.16 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.13 2.34 7.45 -51.93 -0.39 1.95 16 41 H 0.09 1.12 5.59 -51.93 -0.29 0.83 16 42 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 43 H 0.10 1.94 8.14 -51.93 -0.42 1.51 16 44 H 0.10 1.70 7.72 -51.93 -0.40 1.30 16 LS Contribution 352.75 15.07 5.32 5.32 Total: -1.00 -29.61 352.75 -9.48 -39.09 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.83 Total: 4.54 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -0.63 Total: -9.46 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.04 Total: -59.49 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -2.06 Total: -47.09 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.68 Total: 15.44 kcal Atomic # 16 Polarization: 52.31 SS G_CDS: -0.65 Total: 51.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.61 -9.48 -39.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255420413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.383 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds