Wall clock time and date at job start Fri Apr 10 2020 18:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00169 * 2 1 4 4 C 1.50703 * 109.47233 * 80.93281 * 3 2 1 5 5 H 1.07997 * 119.99815 * 3.64992 * 4 3 2 6 6 C 1.37878 * 120.00264 * 183.64530 * 4 3 2 7 7 N 1.31511 * 119.99863 * 174.79114 * 6 4 3 8 8 Si 1.86797 * 120.00060 * 354.79644 * 6 4 3 9 9 H 1.48509 * 109.46962 * 269.99710 * 8 6 4 10 10 H 1.48507 * 109.47157 * 29.99409 * 8 6 4 11 11 H 1.48499 * 109.47523 * 149.99496 * 8 6 4 12 12 S 1.65603 * 119.99910 * 180.02562 * 2 1 3 13 13 O 1.42102 * 106.40101 * 20.26103 * 12 2 1 14 14 O 1.42103 * 106.40013 * 153.18133 * 12 2 1 15 15 N 1.65600 * 107.21458 * 266.72166 * 12 2 1 16 16 C 1.46502 * 119.99633 * 95.85913 * 15 12 2 17 17 C 1.52999 * 109.47412 * 101.24503 * 16 15 12 18 18 H 1.09003 * 110.45664 * 51.31016 * 17 16 15 19 19 C 1.54505 * 110.51234 * 173.91493 * 17 16 15 20 20 C 1.54479 * 104.05999 * 118.64417 * 19 17 16 21 21 O 1.44429 * 104.80268 * 23.98393 * 20 19 17 22 22 C 1.44643 * 105.36554 * 319.56103 * 21 20 19 23 23 C 1.46498 * 120.00211 * 275.84830 * 15 12 2 24 24 C 1.52995 * 117.50061 * 188.74711 * 23 15 12 25 25 C 1.53003 * 117.49502 * 120.08865 * 23 15 12 26 26 H 1.08998 * 109.47170 * 89.99890 * 1 2 3 27 27 H 1.08996 * 109.46992 * 209.99911 * 1 2 3 28 28 H 1.09003 * 109.46561 * 329.99872 * 1 2 3 29 29 H 1.09000 * 109.47161 * 320.93659 * 3 2 1 30 30 H 1.08993 * 109.47459 * 200.93576 * 3 2 1 31 31 H 0.97003 * 120.00053 * 180.02562 * 7 6 4 32 32 H 1.09010 * 109.46555 * 221.24124 * 16 15 12 33 33 H 1.08994 * 109.47384 * 341.24101 * 16 15 12 34 34 H 1.09004 * 110.51433 * 237.28914 * 19 17 16 35 35 H 1.08996 * 110.51266 * 359.86384 * 19 17 16 36 36 H 1.09007 * 110.37520 * 142.80946 * 20 19 17 37 37 H 1.08997 * 110.37565 * 265.14700 * 20 19 17 38 38 H 1.08998 * 110.34173 * 281.59769 * 22 21 20 39 39 H 1.09000 * 110.50484 * 159.19031 * 22 21 20 40 40 H 1.08994 * 115.55124 * 334.42726 * 23 15 12 41 41 H 1.09001 * 117.50106 * 0.02562 * 24 23 15 42 42 H 1.09008 * 117.49717 * 145.02196 * 24 23 15 43 43 H 1.09001 * 117.49858 * 214.98145 * 25 23 15 44 44 H 1.09000 * 117.49686 * 0.02562 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2548 1.8157 1.4031 5 1 1.8438 1.2447 2.2224 6 6 2.8321 3.0450 1.6407 7 7 2.7913 3.5685 2.8465 8 14 3.6719 3.9671 0.2501 9 1 5.1052 3.5822 0.1956 10 1 3.0177 3.6231 -1.0380 11 1 3.5605 5.4288 0.4869 12 16 2.2930 -1.4342 -0.0006 13 8 1.3861 -2.4209 -0.4732 14 8 3.5472 -1.1731 -0.6156 15 7 2.6164 -1.8141 1.5784 16 6 1.7281 -2.7204 2.3104 17 6 2.3571 -4.1139 2.3692 18 1 3.3817 -4.0542 2.7362 19 6 1.5152 -5.0505 3.2643 20 6 1.0644 -6.1775 2.3087 21 8 2.0467 -6.1786 1.2500 22 6 2.3187 -4.7842 0.9781 23 6 3.7908 -1.2441 2.2433 24 6 4.1520 -1.7869 3.6273 25 6 3.5513 -0.3860 3.4872 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3632 0.8900 0.5139 29 1 1.6882 1.9823 -0.6476 30 1 3.2104 1.1035 -0.3672 31 1 3.1971 4.4336 3.0136 32 1 1.5808 -2.3452 3.3232 33 1 0.7665 -2.7771 1.8005 34 1 2.1243 -5.4558 4.0724 35 1 0.6522 -4.5203 3.6668 36 1 1.0637 -7.1367 2.8267 37 1 0.0743 -5.9614 1.9075 38 1 1.5218 -4.3541 0.3715 39 1 3.2803 -4.6735 0.4768 40 1 4.6111 -0.9582 1.5850 41 1 3.5160 -2.5685 4.0431 42 1 5.2101 -1.8579 3.8798 43 1 4.2144 0.4642 3.6474 44 1 2.5200 -0.2460 3.8110 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255420413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:24 Heat of formation + Delta-G solvation = -103.865951 kcal Electronic energy + Delta-G solvation = -27313.231461 eV Core-core repulsion = 23585.992722 eV Total energy + Delta-G solvation = -3727.238740 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.62449 -38.92181 -38.38818 -37.27598 -36.95502 -34.95623 -34.40059 -32.64556 -30.19457 -30.05571 -26.85841 -26.66694 -23.86503 -23.78366 -23.07811 -22.39897 -21.24969 -19.91305 -19.22473 -18.79367 -18.38522 -17.66205 -17.23043 -16.77608 -16.32268 -16.14113 -16.03083 -15.69770 -15.23901 -14.84692 -14.60838 -14.40099 -14.31118 -13.90731 -13.78951 -13.49878 -13.47400 -13.26689 -13.14196 -13.00183 -12.87835 -12.67472 -12.44188 -12.37530 -12.24864 -12.19863 -12.02934 -11.95426 -11.70812 -11.53102 -11.43835 -11.10665 -10.68912 -10.66749 -9.80515 -9.58762 -8.19715 -6.19805 -0.39561 1.37076 1.42588 1.47677 1.84579 2.39233 2.46770 2.98573 3.08287 3.14279 3.32377 3.54394 3.75191 3.94154 3.96809 4.05955 4.09090 4.15635 4.24419 4.27643 4.40052 4.47231 4.60986 4.66681 4.73672 4.75091 4.85370 4.88272 4.91402 4.96199 4.97960 5.02659 5.12920 5.20814 5.30240 5.34140 5.39779 5.44017 5.50753 5.60870 5.85557 5.87879 6.40553 6.86018 7.42443 8.93968 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019892 B = 0.005109 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.232841 B = 5479.115746 C = 6100.819115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.998 5.998 3 C 0.218 3.782 4 C -0.518 4.518 5 H 0.070 0.930 6 C 0.034 3.966 7 N -0.928 5.928 8 Si 0.906 3.094 9 H -0.274 1.274 10 H -0.252 1.252 11 H -0.284 1.284 12 S 2.792 3.208 13 O -0.989 6.989 14 O -1.013 7.013 15 N -0.968 5.968 16 C 0.126 3.874 17 C -0.137 4.137 18 H 0.097 0.903 19 C -0.140 4.140 20 C 0.035 3.965 21 O -0.401 6.401 22 C 0.028 3.972 23 C 0.072 3.928 24 C -0.156 4.156 25 C -0.164 4.164 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.571 -14.503 2.666 15.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.839 5.839 3 C 0.093 3.907 4 C -0.557 4.557 5 H 0.088 0.912 6 C -0.165 4.165 7 N -0.568 5.568 8 Si 0.731 3.269 9 H -0.200 1.200 10 H -0.176 1.176 11 H -0.210 1.210 12 S 2.803 3.197 13 O -0.973 6.973 14 O -0.997 6.997 15 N -0.805 5.805 16 C 0.001 3.999 17 C -0.157 4.157 18 H 0.115 0.885 19 C -0.178 4.178 20 C -0.041 4.041 21 O -0.321 6.321 22 C -0.049 4.049 23 C -0.035 4.035 24 C -0.195 4.195 25 C -0.204 4.204 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.096 0.904 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.230 -15.024 1.828 15.476 hybrid contribution 0.437 1.568 -0.234 1.645 sum -2.793 -13.456 1.594 13.835 Atomic orbital electron populations 1.21471 0.77775 1.03423 1.02072 1.57443 1.15739 1.21657 1.89013 1.19384 0.91817 0.82264 0.97229 1.21543 1.37810 1.03210 0.93127 0.91161 1.25363 0.96461 0.97922 0.96786 1.69985 1.46141 1.18501 1.22177 0.86366 0.80143 0.78431 0.81943 1.20005 1.17630 1.21015 1.01431 0.72422 0.72400 0.73469 1.93516 1.65658 1.58452 1.79656 1.93507 1.44732 1.85973 1.75527 1.57297 1.34486 1.57422 1.31255 1.21563 0.91951 0.87229 0.99165 1.23039 1.02266 0.94841 0.95563 0.88472 1.22953 1.00868 0.95718 0.98275 1.23661 0.92014 1.00797 0.87647 1.89092 1.61534 1.24763 1.56708 1.23871 1.01628 0.81833 0.97543 1.21311 0.89129 1.03129 0.89965 1.23524 1.02996 0.97080 0.95922 1.22964 1.01719 0.93932 1.01776 0.92055 0.90532 0.90847 0.94417 0.95318 0.92770 0.88375 0.89219 0.88790 0.88311 0.87304 0.91813 0.90653 0.91066 0.86680 0.86311 0.86894 0.90356 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.06 10.29 127.77 1.32 4.38 16 2 N -1.00 -38.39 3.24 -543.24 -1.76 -40.15 16 3 C 0.22 9.79 4.50 85.63 0.39 10.18 16 4 C -0.52 -25.83 9.54 25.60 0.24 -25.58 16 5 H 0.07 3.69 6.95 -2.91 -0.02 3.67 16 6 C 0.03 1.80 5.47 84.66 0.46 2.26 16 7 N -0.93 -52.01 13.96 21.45 0.30 -51.71 16 8 Si 0.91 41.32 27.51 68.60 1.89 43.21 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.25 -10.92 6.51 99.48 0.65 -10.27 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 S 2.79 103.84 6.01 -56.49 -0.34 103.50 16 13 O -0.99 -35.69 13.12 -128.00 -1.68 -37.37 16 14 O -1.01 -44.55 15.66 -128.00 -2.00 -46.55 16 15 N -0.97 -30.17 3.10 -493.40 -1.53 -31.70 16 16 C 0.13 3.01 4.01 86.38 0.35 3.36 16 17 C -0.14 -2.97 2.80 -9.78 -0.03 -2.99 16 18 H 0.10 2.05 6.42 -2.39 -0.02 2.04 16 19 C -0.14 -2.18 6.74 31.61 0.21 -1.97 16 20 C 0.04 0.64 7.64 72.48 0.55 1.20 16 21 O -0.40 -10.89 11.65 -148.98 -1.74 -12.62 16 22 C 0.03 0.78 6.73 72.48 0.49 1.26 16 23 C 0.07 2.31 6.36 44.99 0.29 2.59 16 24 C -0.16 -3.81 8.94 30.62 0.27 -3.53 16 25 C -0.16 -5.47 8.97 30.62 0.27 -5.19 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.08 2.03 7.70 -2.39 -0.02 2.01 16 28 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 29 H 0.04 1.67 7.17 -2.39 -0.02 1.65 16 30 H 0.03 1.37 6.37 -2.39 -0.02 1.35 16 31 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 32 H 0.10 2.03 6.90 -2.38 -0.02 2.01 16 33 H 0.09 2.09 7.02 -2.39 -0.02 2.07 16 34 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.10 1.20 7.73 -2.39 -0.02 1.18 16 36 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 2.31 5.37 -2.39 -0.01 2.29 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.12 4.13 7.45 -2.39 -0.02 4.12 16 41 H 0.12 2.33 5.59 -2.39 -0.01 2.32 16 42 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 43 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 44 H 0.09 3.01 7.72 -2.39 -0.02 3.00 16 Total: -1.00 -64.30 352.75 -1.11 -65.41 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.94 Total: 22.02 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 4.82 Total: -14.04 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -2.99 Total: -123.56 kcal Atomic # 8 Polarization: -91.12 SS G_CDS: -5.42 Total: -96.54 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.89 Total: 43.21 kcal Atomic # 16 Polarization: 103.84 SS G_CDS: -0.34 Total: 103.50 kcal Total: -64.30 -1.11 -65.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255420413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.455 kcal (2) G-P(sol) polarization free energy of solvation -64.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds