Wall clock time and date at job start Fri Apr 10 2020 18:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00302 * 2 1 4 4 C 1.38726 * 120.05788 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94477 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05411 * 0.28574 * 5 4 3 7 7 C 1.50696 * 119.94521 * 179.72456 * 6 5 4 8 8 N 1.46498 * 109.47249 * 89.99329 * 7 6 5 9 9 C 1.46767 * 124.34736 * 269.72465 * 8 7 6 10 10 C 1.54661 * 105.37989 * 162.85793 * 9 8 7 11 11 H 1.09001 * 111.19193 * 267.59849 * 10 9 8 12 12 C 1.50694 * 110.82440 * 143.77752 * 10 9 8 13 13 O 1.21295 * 120.00028 * 6.34831 * 12 10 9 14 14 N 1.34783 * 120.00180 * 186.34976 * 12 10 9 15 15 C 1.37095 * 119.99632 * 179.97438 * 14 12 10 16 16 H 1.07995 * 120.00304 * 0.02562 * 15 14 12 17 17 C 1.38954 * 119.99455 * 179.97438 * 15 14 12 18 18 N 1.31414 * 120.00265 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99748 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47045 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47180 * 120.00051 * 19 17 15 22 22 H 1.48507 * 109.46588 * 239.99573 * 19 17 15 23 23 C 1.54632 * 101.68435 * 25.76577 * 10 9 8 24 24 C 1.34420 * 124.34964 * 90.02837 * 8 7 6 25 25 O 1.21281 * 124.93922 * 0.42375 * 24 8 7 26 26 C 1.38264 * 120.10762 * 359.44038 * 6 5 4 27 27 C 1.38144 * 120.05928 * 0.55731 * 26 6 5 28 28 H 1.09002 * 109.47042 * 299.99130 * 1 2 3 29 29 H 1.08996 * 109.47358 * 59.99767 * 1 2 3 30 30 H 1.09009 * 109.47263 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.02799 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.97030 * 179.97438 * 5 4 3 33 33 H 1.08992 * 109.47236 * 209.99565 * 7 6 5 34 34 H 1.09007 * 109.46901 * 329.99383 * 7 6 5 35 35 H 1.08996 * 110.24823 * 281.98206 * 9 8 7 36 36 H 1.08991 * 110.24850 * 43.98868 * 9 8 7 37 37 H 0.97000 * 119.99816 * 359.97438 * 14 12 10 38 38 H 0.96995 * 120.00116 * 179.97438 * 18 17 15 39 39 H 1.09003 * 110.48636 * 216.30944 * 23 10 9 40 40 H 1.08997 * 110.59774 * 93.72443 * 23 10 9 41 41 H 1.08007 * 119.96975 * 180.26053 * 26 6 5 42 42 H 1.08007 * 120.02904 * 179.75033 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6757 0.0049 7 6 3.9861 5.0185 0.0106 8 7 4.2079 5.4593 -1.3688 9 6 5.4155 5.1633 -2.1486 10 6 5.0269 5.4269 -3.6223 11 1 4.6695 4.5169 -4.1043 12 6 6.1845 6.0192 -4.3838 13 8 7.2719 6.1166 -3.8553 14 7 6.0116 6.4408 -5.6523 15 6 7.0647 6.9801 -6.3449 16 1 8.0329 7.0668 -5.8742 17 6 6.8866 7.4142 -7.6528 18 7 5.7089 7.3074 -8.2260 19 14 8.3216 8.1485 -8.5968 20 1 9.5299 8.1562 -7.7335 21 1 8.5847 7.3337 -9.8101 22 1 7.9907 9.5398 -8.9970 23 6 3.8833 6.4557 -3.4654 24 6 3.3342 6.1919 -2.0807 25 8 2.2618 6.5844 -1.6722 26 6 1.9211 3.6047 -0.0013 27 6 1.2915 2.3750 -0.0009 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0208 0.3799 0.0005 32 1 5.1346 2.5749 0.0008 33 1 3.3580 5.7440 0.5274 34 1 4.9440 4.9360 0.5242 35 1 6.2301 5.8217 -1.8471 36 1 5.7037 4.1206 -2.0165 37 1 5.1421 6.3626 -6.0751 38 1 5.5844 7.6108 -9.1388 39 1 3.1138 6.2887 -4.2191 40 1 4.2699 7.4725 -3.5351 41 1 1.3342 4.5114 -0.0018 42 1 0.2129 2.3201 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263848085.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:29 Heat of formation + Delta-G solvation = -82.733076 kcal Electronic energy + Delta-G solvation = -25929.773712 eV Core-core repulsion = 22068.007411 eV Total energy + Delta-G solvation = -3861.766301 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.63450 -40.08331 -38.23247 -37.71798 -35.89922 -34.06069 -33.22298 -31.36568 -31.22893 -30.16724 -27.85725 -27.36471 -25.98139 -24.92199 -22.94889 -22.28323 -21.54754 -19.36219 -19.05024 -18.36332 -17.96428 -16.82662 -16.66155 -16.42817 -15.98803 -15.70108 -15.26837 -14.90477 -14.56411 -14.23065 -14.00150 -13.98135 -13.95008 -13.63007 -13.41529 -13.00585 -12.77905 -12.60403 -12.29811 -12.28928 -11.95081 -11.78884 -11.62894 -11.27867 -11.20979 -11.08485 -10.94180 -10.91948 -10.39919 -10.28830 -9.70880 -9.61478 -9.16142 -8.68038 -8.49211 -8.29540 -8.07403 -6.50437 -3.91884 1.14725 1.21005 2.76558 3.01808 3.09370 3.11193 3.23268 3.29845 3.70343 3.74137 4.09236 4.45541 4.59942 4.66555 4.67938 4.75913 4.80878 4.84671 4.91541 5.06326 5.14442 5.19620 5.21648 5.29738 5.34224 5.47400 5.53136 5.57612 5.76437 5.87367 5.88802 6.06045 6.06977 6.18629 6.24882 6.33692 6.45304 6.56074 6.63604 7.15526 7.23091 7.47592 7.95378 8.32924 8.48318 9.07267 9.42687 9.91769 10.66650 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.002606 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.799190 B =10743.183004 C =10944.716992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.127 3.873 4 C -0.155 4.155 5 C -0.064 4.064 6 C -0.144 4.144 7 C 0.170 3.830 8 N -0.615 5.615 9 C 0.122 3.878 10 C -0.111 4.111 11 H 0.102 0.898 12 C 0.447 3.553 13 O -0.593 6.593 14 N -0.552 5.552 15 C -0.303 4.303 16 H 0.105 0.895 17 C 0.025 3.975 18 N -0.896 5.896 19 Si 0.930 3.070 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.145 4.145 24 C 0.523 3.477 25 O -0.541 6.541 26 C -0.056 4.056 27 C -0.210 4.210 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.394 0.606 38 H 0.273 0.727 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.129 0.871 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.246 -11.054 15.315 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.082 3.918 4 C -0.173 4.173 5 C -0.082 4.082 6 C -0.145 4.145 7 C 0.048 3.952 8 N -0.349 5.349 9 C -0.001 4.001 10 C -0.133 4.133 11 H 0.120 0.880 12 C 0.232 3.768 13 O -0.479 6.479 14 N -0.187 5.187 15 C -0.433 4.433 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.537 5.537 19 Si 0.757 3.243 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.186 4.186 24 C 0.312 3.688 25 O -0.418 6.418 26 C -0.075 4.075 27 C -0.229 4.229 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.228 0.772 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.147 0.853 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.059 -10.926 15.743 21.196 hybrid contribution -0.193 0.309 -0.972 1.038 sum -9.253 -10.617 14.771 20.408 Atomic orbital electron populations 1.23054 0.78394 1.03871 1.01459 1.86059 1.21412 1.27094 1.88722 1.19076 0.92439 0.84068 0.96209 1.20403 0.91311 0.98671 1.06957 1.20901 0.99874 0.90907 0.96540 1.20178 0.93926 0.95587 1.04845 1.20155 1.00629 0.92169 0.82219 1.48411 1.19659 1.53194 1.13589 1.22015 0.86784 1.02227 0.89061 1.22120 0.95713 0.99601 0.95909 0.88038 1.19340 0.88817 0.85257 0.83353 1.90528 1.26747 1.61557 1.69031 1.41867 1.13076 1.52964 1.10754 1.19782 0.92201 1.36343 0.94955 0.87671 1.25304 0.97860 0.97579 0.97019 1.69616 1.22329 1.46921 1.14787 0.85791 0.80839 0.78449 0.79220 1.19139 1.20670 1.20664 1.22372 0.98898 1.01901 0.95407 1.20948 0.83426 0.76624 0.87804 1.90664 1.21785 1.53770 1.75595 1.20967 0.94107 0.97279 0.95105 1.21231 1.00013 0.92311 1.09360 0.92663 0.92557 0.88275 0.85174 0.85155 0.89329 0.89365 0.88885 0.90470 0.77219 0.91715 0.87657 0.87212 0.85323 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.38 10.50 -19.42 -0.20 -3.58 16 3 C 0.13 1.44 6.69 -39.22 -0.26 1.18 16 4 C -0.15 -1.68 9.99 -39.43 -0.39 -2.07 16 5 C -0.06 -0.67 9.69 -39.60 -0.38 -1.05 16 6 C -0.14 -1.65 5.46 -104.60 -0.57 -2.22 16 7 C 0.17 1.93 6.05 -5.20 -0.03 1.90 16 8 N -0.62 -8.52 2.92 -173.68 -0.51 -9.02 16 9 C 0.12 1.76 6.65 -3.02 -0.02 1.74 16 10 C -0.11 -1.82 3.56 -90.04 -0.32 -2.14 16 11 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 12 C 0.45 9.74 7.03 -10.99 -0.08 9.67 16 13 O -0.59 -14.83 15.14 5.54 0.08 -14.75 16 14 N -0.55 -13.20 5.24 -10.96 -0.06 -13.25 16 15 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 16 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 17 C 0.02 0.64 5.50 -17.46 -0.10 0.55 16 18 N -0.90 -23.59 13.05 55.50 0.72 -22.86 16 19 Si 0.93 20.35 29.55 -169.99 -5.02 15.33 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 C -0.15 -2.28 6.36 -26.74 -0.17 -2.45 16 24 C 0.52 8.43 8.02 -10.86 -0.09 8.34 16 25 O -0.54 -9.99 17.59 5.56 0.10 -9.89 16 26 C -0.06 -0.66 9.69 -39.61 -0.38 -1.04 16 27 C -0.21 -2.29 9.04 -39.43 -0.36 -2.65 16 28 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.10 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.09 1.02 7.87 -51.93 -0.41 0.61 16 34 H 0.09 0.81 8.08 -51.92 -0.42 0.39 16 35 H 0.09 1.49 7.07 -51.93 -0.37 1.12 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.39 9.07 7.90 -40.82 -0.32 8.74 16 38 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 39 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.11 1.83 7.89 -51.93 -0.41 1.42 16 41 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 42 H 0.13 1.13 6.30 -52.48 -0.33 0.80 16 LS Contribution 361.19 15.07 5.44 5.44 Total: -1.00 -31.99 361.19 -7.27 -39.26 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.52 Total: 10.63 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -2.31 Total: 2.70 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.16 Total: -45.14 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.02 Total: -28.22 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.99 -7.27 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263848085.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.473 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds