Wall clock time and date at job start Fri Apr 10 2020 18:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00302 * 2 1 4 4 C 1.38726 * 120.05788 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94477 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05411 * 0.28574 * 5 4 3 7 7 C 1.50696 * 119.94521 * 179.72456 * 6 5 4 8 8 N 1.46498 * 109.47249 * 89.99329 * 7 6 5 9 9 C 1.46767 * 124.34736 * 269.72465 * 8 7 6 10 10 C 1.54661 * 105.37989 * 162.85793 * 9 8 7 11 11 H 1.09001 * 111.19193 * 267.59849 * 10 9 8 12 12 C 1.50694 * 110.82440 * 143.77752 * 10 9 8 13 13 O 1.21295 * 120.00028 * 6.34831 * 12 10 9 14 14 N 1.34783 * 120.00180 * 186.34976 * 12 10 9 15 15 C 1.37095 * 119.99632 * 179.97438 * 14 12 10 16 16 H 1.07995 * 120.00304 * 0.02562 * 15 14 12 17 17 C 1.38954 * 119.99455 * 179.97438 * 15 14 12 18 18 N 1.31414 * 120.00265 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99748 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47045 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47180 * 120.00051 * 19 17 15 22 22 H 1.48507 * 109.46588 * 239.99573 * 19 17 15 23 23 C 1.54632 * 101.68435 * 25.76577 * 10 9 8 24 24 C 1.34420 * 124.34964 * 90.02837 * 8 7 6 25 25 O 1.21281 * 124.93922 * 0.42375 * 24 8 7 26 26 C 1.38264 * 120.10762 * 359.44038 * 6 5 4 27 27 C 1.38144 * 120.05928 * 0.55731 * 26 6 5 28 28 H 1.09002 * 109.47042 * 299.99130 * 1 2 3 29 29 H 1.08996 * 109.47358 * 59.99767 * 1 2 3 30 30 H 1.09009 * 109.47263 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.02799 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.97030 * 179.97438 * 5 4 3 33 33 H 1.08992 * 109.47236 * 209.99565 * 7 6 5 34 34 H 1.09007 * 109.46901 * 329.99383 * 7 6 5 35 35 H 1.08996 * 110.24823 * 281.98206 * 9 8 7 36 36 H 1.08991 * 110.24850 * 43.98868 * 9 8 7 37 37 H 0.97000 * 119.99816 * 359.97438 * 14 12 10 38 38 H 0.96995 * 120.00116 * 179.97438 * 18 17 15 39 39 H 1.09003 * 110.48636 * 216.30944 * 23 10 9 40 40 H 1.08997 * 110.59774 * 93.72443 * 23 10 9 41 41 H 1.08007 * 119.96975 * 180.26053 * 26 6 5 42 42 H 1.08007 * 120.02904 * 179.75033 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6757 0.0049 7 6 3.9861 5.0185 0.0106 8 7 4.2079 5.4593 -1.3688 9 6 5.4155 5.1633 -2.1486 10 6 5.0269 5.4269 -3.6223 11 1 4.6695 4.5169 -4.1043 12 6 6.1845 6.0192 -4.3838 13 8 7.2719 6.1166 -3.8553 14 7 6.0116 6.4408 -5.6523 15 6 7.0647 6.9801 -6.3449 16 1 8.0329 7.0668 -5.8742 17 6 6.8866 7.4142 -7.6528 18 7 5.7089 7.3074 -8.2260 19 14 8.3216 8.1485 -8.5968 20 1 9.5299 8.1562 -7.7335 21 1 8.5847 7.3337 -9.8101 22 1 7.9907 9.5398 -8.9970 23 6 3.8833 6.4557 -3.4654 24 6 3.3342 6.1919 -2.0807 25 8 2.2618 6.5844 -1.6722 26 6 1.9211 3.6047 -0.0013 27 6 1.2915 2.3750 -0.0009 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0208 0.3799 0.0005 32 1 5.1346 2.5749 0.0008 33 1 3.3580 5.7440 0.5274 34 1 4.9440 4.9360 0.5242 35 1 6.2301 5.8217 -1.8471 36 1 5.7037 4.1206 -2.0165 37 1 5.1421 6.3626 -6.0751 38 1 5.5844 7.6108 -9.1388 39 1 3.1138 6.2887 -4.2191 40 1 4.2699 7.4725 -3.5351 41 1 1.3342 4.5114 -0.0018 42 1 0.2129 2.3201 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263848085.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:29 Heat of formation + Delta-G solvation = -102.982641 kcal Electronic energy + Delta-G solvation = -25930.651799 eV Core-core repulsion = 22068.007411 eV Total energy + Delta-G solvation = -3862.644388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.80320 -40.99756 -39.87951 -38.58830 -37.23594 -35.96546 -34.38366 -33.18551 -32.07343 -31.21033 -28.67978 -28.53693 -27.32749 -26.33156 -24.05988 -23.43018 -22.41816 -20.84319 -20.45714 -19.83388 -19.12481 -18.24656 -17.88331 -17.23377 -17.03386 -16.66450 -16.51858 -16.36160 -15.89379 -15.67649 -15.55546 -15.19350 -14.85542 -14.57842 -14.52235 -14.39610 -13.95031 -13.90539 -13.55800 -13.41698 -12.99743 -12.93331 -12.85602 -12.66089 -12.48202 -12.33451 -12.22449 -12.06823 -11.98983 -11.72599 -11.51657 -11.03257 -10.33952 -10.02349 -9.97686 -9.77202 -9.14057 -8.46481 -5.95100 0.31204 0.37795 1.37476 1.44791 1.49794 1.58093 1.97402 2.02334 2.30854 2.35899 2.84203 3.02041 3.18572 3.37373 3.56769 3.80238 3.86850 3.93577 3.96665 4.05877 4.17755 4.32872 4.36106 4.40851 4.50879 4.55649 4.57645 4.65387 4.70893 4.71913 4.75243 4.85763 5.04422 5.06441 5.26445 5.36380 5.43439 5.49481 5.61736 5.78347 5.98568 6.04896 6.41039 6.56607 7.08791 7.11628 7.54319 8.06855 8.70634 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.002606 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.799190 B =10743.183004 C =10944.716992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.118 3.882 4 C -0.164 4.164 5 C -0.061 4.061 6 C -0.152 4.152 7 C 0.167 3.833 8 N -0.605 5.605 9 C 0.129 3.871 10 C -0.101 4.101 11 H 0.125 0.875 12 C 0.453 3.547 13 O -0.625 6.625 14 N -0.564 5.564 15 C -0.332 4.332 16 H 0.084 0.916 17 C -0.011 4.011 18 N -0.918 5.918 19 Si 0.991 3.009 20 H -0.271 1.271 21 H -0.272 1.272 22 H -0.274 1.274 23 C -0.142 4.142 24 C 0.522 3.478 25 O -0.567 6.567 26 C -0.069 4.069 27 C -0.215 4.215 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.143 0.857 32 H 0.152 0.848 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.263 -12.178 15.693 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.073 3.927 4 C -0.183 4.183 5 C -0.080 4.080 6 C -0.154 4.154 7 C 0.047 3.953 8 N -0.337 5.337 9 C 0.006 3.994 10 C -0.123 4.123 11 H 0.143 0.857 12 C 0.240 3.760 13 O -0.512 6.512 14 N -0.199 5.199 15 C -0.462 4.462 16 H 0.102 0.898 17 C -0.212 4.212 18 N -0.558 5.558 19 Si 0.815 3.185 20 H -0.195 1.195 21 H -0.198 1.198 22 H -0.199 1.199 23 C -0.182 4.182 24 C 0.311 3.689 25 O -0.447 6.447 26 C -0.088 4.088 27 C -0.234 4.234 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.170 0.830 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.135 0.865 40 H 0.116 0.884 41 H 0.137 0.863 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.085 -12.071 16.140 22.108 hybrid contribution -0.230 0.591 -1.005 1.189 sum -9.315 -11.480 15.134 21.157 Atomic orbital electron populations 1.23322 0.76624 1.05566 1.02053 1.86042 1.23331 1.26837 1.88601 1.19281 0.92920 0.84422 0.96086 1.20677 0.91476 0.99391 1.06731 1.21121 1.00903 0.90311 0.95620 1.20185 0.93823 0.95787 1.05587 1.20370 1.02087 0.92140 0.80740 1.48432 1.18661 1.52204 1.14359 1.21947 0.86389 1.03444 0.87606 1.22022 0.93579 1.00133 0.96559 0.85691 1.20173 0.89721 0.83465 0.82665 1.90508 1.28753 1.62371 1.69604 1.41922 1.12677 1.53729 1.11562 1.19740 0.92311 1.38194 0.95926 0.89807 1.26036 1.00242 0.97525 0.97351 1.69675 1.23576 1.47333 1.15228 0.84892 0.77770 0.77958 0.77880 1.19510 1.19760 1.19915 1.22322 0.98844 1.01009 0.96032 1.20916 0.83313 0.76777 0.87944 1.90653 1.22980 1.55026 1.76080 1.21015 0.94547 0.97310 0.95938 1.21386 1.00908 0.91969 1.09128 0.91716 0.92286 0.86140 0.83961 0.83032 0.89702 0.86655 0.90233 0.87852 0.76854 0.91284 0.86488 0.88440 0.86284 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.56 10.50 -92.42 -0.97 -7.53 16 3 C 0.12 2.50 6.69 22.50 0.15 2.65 16 4 C -0.16 -3.23 9.99 22.37 0.22 -3.01 16 5 C -0.06 -1.13 9.69 22.26 0.22 -0.92 16 6 C -0.15 -3.22 5.46 -19.85 -0.11 -3.33 16 7 C 0.17 3.48 6.05 85.63 0.52 4.00 16 8 N -0.60 -15.69 2.92 -821.98 -2.40 -18.08 16 9 C 0.13 3.46 6.65 86.89 0.58 4.04 16 10 C -0.10 -3.16 3.56 -10.42 -0.04 -3.20 16 11 H 0.13 3.41 8.14 -2.39 -0.02 3.39 16 12 C 0.45 19.64 7.03 87.65 0.62 20.25 16 13 O -0.62 -31.39 15.14 -3.08 -0.05 -31.43 16 14 N -0.56 -27.15 5.24 -306.98 -1.61 -28.75 16 15 C -0.33 -17.93 9.68 84.04 0.81 -17.12 16 16 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 17 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 18 N -0.92 -48.08 13.05 21.66 0.28 -47.80 16 19 Si 0.99 41.54 29.55 68.60 2.03 43.57 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 C -0.14 -4.33 6.36 30.59 0.19 -4.14 16 24 C 0.52 16.31 8.02 87.90 0.70 17.01 16 25 O -0.57 -20.75 17.59 -3.03 -0.05 -20.80 16 26 C -0.07 -1.58 9.69 22.25 0.22 -1.36 16 27 C -0.22 -4.45 9.04 22.36 0.20 -4.25 16 28 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.06 0.66 7.66 -2.39 -0.02 0.65 16 30 H 0.12 0.86 8.14 -2.38 -0.02 0.85 16 31 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 32 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.08 1.86 7.87 -2.39 -0.02 1.84 16 34 H 0.12 1.78 8.08 -2.38 -0.02 1.76 16 35 H 0.08 2.43 7.07 -2.39 -0.02 2.41 16 36 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.40 18.36 7.90 -92.71 -0.73 17.63 16 38 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 39 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.10 3.25 7.89 -2.39 -0.02 3.23 16 41 H 0.12 2.88 8.06 -2.91 -0.02 2.86 16 42 H 0.14 2.35 6.30 -2.91 -0.02 2.33 16 Total: -1.00 -68.58 361.19 3.42 -65.15 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.32 Total: 33.83 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 5.87 Total: 11.85 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -3.72 Total: -94.63 kcal Atomic # 8 Polarization: -58.70 SS G_CDS: -1.07 Total: -59.77 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -68.58 3.42 -65.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263848085.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.830 kcal (2) G-P(sol) polarization free energy of solvation -68.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds