Wall clock time and date at job start Fri Apr 10 2020 18:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46764 * 124.34775 * 2 1 4 4 C 1.54483 * 105.47230 * 163.00480 * 3 2 1 5 5 H 1.08995 * 110.97219 * 267.25803 * 4 3 2 6 6 C 1.50698 * 110.97102 * 143.53264 * 4 3 2 7 7 O 1.21285 * 119.99953 * 359.97438 * 6 4 3 8 8 N 1.34776 * 120.00238 * 180.02562 * 6 4 3 9 9 C 1.46505 * 119.99939 * 180.02562 * 8 6 4 10 10 C 1.50700 * 109.46837 * 180.02562 * 9 8 6 11 11 C 1.38297 * 119.93622 * 89.99727 * 10 9 8 12 12 C 1.38100 * 120.07295 * 179.97438 * 11 10 9 13 13 C 1.38873 * 119.93066 * 0.02562 * 12 11 10 14 14 O 1.35746 * 120.07437 * 179.97438 * 13 12 11 15 15 C 1.34831 * 116.99601 * 5.53502 * 14 13 12 16 16 H 1.08001 * 120.00269 * 354.94030 * 15 14 13 17 17 C 1.38657 * 119.99957 * 174.94141 * 15 14 13 18 18 N 1.31555 * 120.00200 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99904 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47352 * 60.00052 * 19 17 15 21 21 H 1.48501 * 109.47122 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47168 * 300.00330 * 19 17 15 23 23 C 1.38887 * 119.86037 * 0.25118 * 13 12 11 24 24 C 1.38101 * 119.92912 * 359.49391 * 23 13 12 25 25 C 1.54632 * 101.76394 * 25.41831 * 4 3 2 26 26 C 1.34422 * 124.34907 * 180.02562 * 2 1 3 27 27 O 1.21279 * 124.94419 * 0.38904 * 26 2 1 28 28 H 1.09004 * 109.47088 * 90.00088 * 1 2 3 29 29 H 1.08997 * 109.47284 * 209.99722 * 1 2 3 30 30 H 1.08996 * 109.47244 * 330.00256 * 1 2 3 31 31 H 1.08990 * 110.24866 * 44.00467 * 3 2 1 32 32 H 1.09002 * 110.32148 * 282.03746 * 3 2 1 33 33 H 0.96995 * 119.99902 * 0.02562 * 8 6 4 34 34 H 1.08993 * 109.47149 * 59.99868 * 9 8 6 35 35 H 1.08998 * 109.46762 * 299.99684 * 9 8 6 36 36 H 1.08007 * 119.96355 * 0.02562 * 11 10 9 37 37 H 1.08001 * 120.03228 * 180.02562 * 12 11 10 38 38 H 0.97004 * 119.99726 * 359.97438 * 18 17 15 39 39 H 1.07997 * 120.03252 * 179.72099 * 23 13 12 40 40 H 1.07999 * 119.96267 * 180.23356 * 24 23 13 41 41 H 1.08993 * 110.48785 * 93.88034 * 25 4 3 42 42 H 1.09005 * 110.48302 * 216.52571 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2117 0.0000 4 6 3.7011 0.7486 0.4352 5 1 3.8276 0.8451 1.5135 6 6 4.7715 1.5124 -0.3010 7 8 4.4629 2.3606 -1.1111 8 7 6.0717 1.2521 -0.0599 9 6 7.1123 1.9951 -0.7752 10 6 8.4692 1.5166 -0.3270 11 6 9.0853 0.4701 -0.9887 12 6 10.3289 0.0296 -0.5806 13 6 10.9608 0.6385 0.4958 14 8 12.1830 0.2076 0.8997 15 6 12.7793 -0.7370 0.1446 16 1 12.2508 -1.1748 -0.6894 17 6 14.0710 -1.1463 0.4387 18 7 14.7146 -0.6135 1.4549 19 14 14.8968 -2.4555 -0.6070 20 1 14.9809 -1.9855 -2.0132 21 1 16.2642 -2.7136 -0.0883 22 1 14.1018 -3.7084 -0.5506 23 6 10.3370 1.6854 1.1619 24 6 9.0956 2.1247 0.7457 25 6 3.6898 -0.7378 0.0092 26 6 2.2234 -1.1098 -0.0005 27 8 1.7946 -2.2442 -0.0078 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.8986 1.9381 0.7104 32 1 2.3306 1.6445 -0.9997 33 1 6.3186 0.5730 0.5871 34 1 7.0124 3.0588 -0.5599 35 1 7.0050 1.8296 -1.8472 36 1 8.5936 -0.0028 -1.8260 37 1 10.8096 -0.7874 -1.0981 38 1 14.2856 0.0660 1.9981 39 1 10.8238 2.1579 2.0022 40 1 8.6117 2.9412 1.2609 41 1 4.1191 -0.8527 -0.9860 42 1 4.2328 -1.3461 0.7326 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263937868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:33 Heat of formation + Delta-G solvation = -100.455325 kcal Electronic energy + Delta-G solvation = -25191.745100 eV Core-core repulsion = 21329.210305 eV Total energy + Delta-G solvation = -3862.534795 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.86314 -40.97940 -40.26120 -38.64002 -37.38951 -35.72687 -34.33583 -33.94151 -31.89268 -31.37537 -28.83869 -28.05134 -27.20636 -26.22341 -23.91849 -23.63562 -22.25436 -21.22507 -20.62999 -20.27186 -18.91489 -18.54455 -17.89700 -17.09300 -17.00365 -16.91369 -16.38966 -16.10565 -15.83223 -15.64594 -15.59919 -15.09976 -15.08402 -14.75130 -14.63078 -14.58395 -14.27728 -14.03771 -13.40965 -13.36751 -13.19266 -13.01800 -12.89802 -12.54534 -12.43887 -12.38329 -12.33478 -12.07237 -11.94198 -11.29404 -11.26559 -10.87388 -10.73167 -10.08434 -9.86407 -9.78843 -9.09135 -8.94156 -6.25408 0.48634 0.52008 1.42628 1.49715 1.55928 1.60801 1.78754 1.92195 2.26819 2.35182 2.84513 3.10533 3.19004 3.32397 3.34455 3.75343 3.86344 3.88282 3.98824 4.12211 4.18163 4.35371 4.42520 4.43333 4.52099 4.59631 4.63916 4.73311 4.77121 4.79969 4.84514 4.92963 4.97629 5.20070 5.22370 5.40886 5.45213 5.48649 5.68141 5.72975 5.98433 6.02107 6.26843 6.54893 6.84838 7.02548 7.19857 7.60718 8.50138 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021461 B = 0.002219 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.349593 B =12613.401085 C =13413.865286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.621 5.621 3 C 0.117 3.883 4 C -0.112 4.112 5 H 0.150 0.850 6 C 0.529 3.471 7 O -0.573 6.573 8 N -0.710 5.710 9 C 0.183 3.817 10 C -0.177 4.177 11 C -0.046 4.046 12 C -0.243 4.243 13 C 0.122 3.878 14 O -0.250 6.250 15 C -0.486 4.486 16 H 0.093 0.907 17 C -0.044 4.044 18 N -0.916 5.916 19 Si 1.143 2.857 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.205 4.205 24 C -0.042 4.042 25 C -0.139 4.139 26 C 0.509 3.491 27 O -0.580 6.580 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.414 0.586 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.116 0.884 38 H 0.261 0.739 39 H 0.116 0.884 40 H 0.153 0.847 41 H 0.108 0.892 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.203 4.883 -2.269 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.354 5.354 3 C -0.006 4.006 4 C -0.134 4.134 5 H 0.167 0.833 6 C 0.315 3.685 7 O -0.453 6.453 8 N -0.362 5.362 9 C 0.061 3.939 10 C -0.179 4.179 11 C -0.064 4.064 12 C -0.262 4.262 13 C 0.072 3.928 14 O -0.157 6.157 15 C -0.562 4.562 16 H 0.110 0.890 17 C -0.241 4.241 18 N -0.551 5.551 19 Si 0.959 3.041 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.224 4.224 24 C -0.060 4.060 25 C -0.179 4.179 26 C 0.297 3.703 27 O -0.460 6.460 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.250 0.750 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.158 0.842 37 H 0.134 0.866 38 H 0.069 0.931 39 H 0.134 0.866 40 H 0.171 0.829 41 H 0.127 0.873 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -24.189 4.131 -2.837 24.702 hybrid contribution -0.853 0.562 0.590 1.179 sum -25.041 4.693 -2.247 25.576 Atomic orbital electron populations 1.21736 0.76713 1.04138 1.02623 1.48377 1.07623 1.07244 1.72202 1.22097 0.87871 0.86508 1.04112 1.22234 0.93348 0.93982 1.03798 0.83274 1.20347 0.83557 0.82604 0.81990 1.90722 1.82599 1.35347 1.36585 1.46128 1.04862 1.41104 1.44075 1.19914 0.81908 0.95907 0.96216 1.19545 0.97799 1.00507 1.00008 1.20973 0.92538 0.94764 0.98155 1.21264 0.98737 1.05036 1.01196 1.19918 0.85682 0.93457 0.93730 1.83649 1.28474 1.53359 1.50241 1.22571 1.01114 1.18158 1.14346 0.88957 1.28339 0.92919 1.03267 0.99558 1.70719 1.40048 1.26809 1.17490 0.82596 0.75614 0.72190 0.73692 1.18541 1.20010 1.18411 1.20485 0.98500 0.99343 1.04113 1.20929 0.92074 0.98134 0.94873 1.22338 0.93789 0.95655 1.06162 1.21252 0.90325 0.84088 0.74591 1.90716 1.79513 1.22967 1.52809 0.92175 0.91617 0.87944 0.87086 0.90123 0.74997 0.90301 0.90991 0.84182 0.86583 0.93066 0.86599 0.82940 0.87333 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 10.96 127.77 1.40 2.36 16 2 N -0.62 -9.01 3.33 -842.91 -2.81 -11.82 16 3 C 0.12 1.27 6.71 86.83 0.58 1.85 16 4 C -0.11 -1.12 3.54 -10.48 -0.04 -1.16 16 5 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 6 C 0.53 8.31 7.06 87.66 0.62 8.93 16 7 O -0.57 -13.28 15.50 -3.04 -0.05 -13.33 16 8 N -0.71 -10.69 5.55 -466.79 -2.59 -13.28 16 9 C 0.18 3.50 5.80 85.63 0.50 4.00 16 10 C -0.18 -4.42 5.25 -19.84 -0.10 -4.52 16 11 C -0.05 -1.35 9.69 22.25 0.22 -1.13 16 12 C -0.24 -9.66 9.17 22.39 0.21 -9.46 16 13 C 0.12 5.60 6.65 22.58 0.15 5.75 16 14 O -0.25 -14.18 9.16 -22.70 -0.21 -14.39 16 15 C -0.49 -27.42 9.49 67.92 0.64 -26.78 16 16 H 0.09 4.83 5.20 -2.91 -0.02 4.81 16 17 C -0.04 -2.48 5.49 84.83 0.47 -2.02 16 18 N -0.92 -56.11 13.70 21.61 0.30 -55.81 16 19 Si 1.14 46.87 29.92 68.60 2.05 48.92 16 20 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 21 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 23 C -0.21 -7.66 9.99 22.39 0.22 -7.43 16 24 C -0.04 -1.14 9.69 22.25 0.22 -0.92 16 25 C -0.14 -1.77 6.41 30.59 0.20 -1.58 16 26 C 0.51 10.00 8.02 87.90 0.71 10.71 16 27 O -0.58 -16.75 17.60 -3.03 -0.05 -16.80 16 28 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 0.86 7.93 -2.39 -0.02 0.84 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 1.15 6.96 -2.39 -0.02 1.14 16 33 H 0.41 5.01 8.46 -92.71 -0.78 4.22 16 34 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 35 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 36 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 37 H 0.12 4.86 5.64 -2.91 -0.02 4.85 16 38 H 0.26 16.60 7.97 -92.71 -0.74 15.87 16 39 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 40 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 41 H 0.11 1.46 7.89 -2.39 -0.02 1.44 16 42 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -79.07 361.10 2.92 -76.15 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.30 Total: 21.76 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 5.98 Total: -21.39 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -5.10 Total: -80.91 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.31 Total: -44.52 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.05 Total: 48.92 kcal Total: -79.07 2.92 -76.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263937868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.309 kcal (2) G-P(sol) polarization free energy of solvation -79.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds