Wall clock time and date at job start Fri Apr 10 2020 18:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46771 * 124.34894 * 2 1 4 4 C 1.54653 * 105.38012 * 162.85920 * 3 2 1 5 5 H 1.09003 * 111.22591 * 267.57460 * 4 3 2 6 6 N 1.46505 * 110.82218 * 143.78109 * 4 3 2 7 7 C 1.34775 * 120.00417 * 161.34778 * 6 4 3 8 8 O 1.21289 * 119.99676 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00011 * 180.02562 * 7 6 4 10 10 C 1.50701 * 109.46999 * 179.97438 * 9 7 6 11 11 C 1.38295 * 119.92934 * 269.72620 * 10 9 7 12 12 C 1.38104 * 120.06868 * 179.72688 * 11 10 9 13 13 C 1.38879 * 119.92682 * 0.56396 * 12 11 10 14 14 O 1.35756 * 120.06554 * 179.68355 * 13 12 11 15 15 C 1.34830 * 116.99889 * 174.48869 * 14 13 12 16 16 H 1.08000 * 119.99985 * 5.05766 * 15 14 13 17 17 C 1.38655 * 120.00107 * 185.05773 * 15 14 13 18 18 N 1.31560 * 119.99616 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00257 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46678 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47231 * 119.99947 * 19 17 15 22 22 H 1.48497 * 109.47178 * 240.00317 * 19 17 15 23 23 C 1.38870 * 119.86794 * 359.70669 * 13 12 11 24 24 C 1.38108 * 119.92678 * 0.02562 * 23 13 12 25 25 C 1.54623 * 101.69155 * 25.76566 * 4 3 2 26 26 C 1.34422 * 124.35252 * 180.30319 * 2 1 3 27 27 O 1.21279 * 124.93793 * 0.38340 * 26 2 1 28 28 H 1.09005 * 109.46611 * 179.72738 * 1 2 3 29 29 H 1.08997 * 109.47025 * 299.71819 * 1 2 3 30 30 H 1.08996 * 109.47528 * 59.72301 * 1 2 3 31 31 H 1.09003 * 110.23976 * 281.98797 * 3 2 1 32 32 H 1.08997 * 110.24221 * 43.98613 * 3 2 1 33 33 H 0.97005 * 119.99794 * 341.34142 * 6 4 3 34 34 H 1.09004 * 109.46985 * 299.99100 * 9 7 6 35 35 H 1.08999 * 109.47337 * 59.99696 * 9 7 6 36 36 H 1.08001 * 119.96658 * 359.97438 * 11 10 9 37 37 H 1.08002 * 120.03660 * 180.26923 * 12 11 10 38 38 H 0.97005 * 119.99774 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.04216 * 179.97438 * 23 13 12 40 40 H 1.07996 * 119.96328 * 180.02562 * 24 23 13 41 41 H 1.08998 * 110.49048 * 216.31240 * 25 4 3 42 42 H 1.09001 * 110.48555 * 93.66494 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7010 0.7464 0.4395 5 1 3.8276 0.8369 1.5183 6 7 4.7418 1.4926 -0.2721 7 6 5.9994 1.5229 0.2116 8 8 6.2694 0.9327 1.2362 9 6 7.0698 2.2909 -0.5201 10 6 8.3747 2.1662 0.2234 11 6 8.7061 3.0923 1.1956 12 6 9.8986 2.9775 1.8826 13 6 10.7706 1.9375 1.5882 14 8 11.9465 1.8257 2.2574 15 6 12.6931 0.7318 2.0045 16 1 12.3877 0.0350 1.2380 17 6 13.8529 0.5015 2.7285 18 7 14.2251 1.3507 3.6619 19 14 14.8869 -1.0144 2.3787 20 1 14.2556 -1.8038 1.2908 21 1 16.2502 -0.5983 1.9621 22 1 14.9765 -1.8464 3.6055 23 6 10.4375 1.0124 0.6075 24 6 9.2410 1.1294 -0.0721 25 6 3.6899 -0.7378 0.0061 26 6 2.2235 -1.1097 -0.0059 27 8 1.7946 -2.2441 -0.0185 28 1 -0.3633 -1.0277 -0.0049 29 1 -0.3633 0.5094 0.8925 30 1 -0.3634 0.5181 -0.8874 31 1 2.3305 1.6430 -1.0004 32 1 1.8984 1.9383 0.7102 33 1 4.5258 1.9648 -1.0914 34 1 7.1842 1.8863 -1.5258 35 1 6.7858 3.3415 -0.5812 36 1 8.0299 3.9038 1.4205 37 1 10.1550 3.6985 2.6448 38 1 15.0368 1.1897 4.1682 39 1 11.1137 0.2027 0.3760 40 1 8.9811 0.4101 -0.8346 41 1 4.2327 -1.3497 0.7266 42 1 4.1195 -0.8477 -0.9896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264679018.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:38 Heat of formation + Delta-G solvation = -64.354170 kcal Electronic energy + Delta-G solvation = -25249.042135 eV Core-core repulsion = 21388.072803 eV Total energy + Delta-G solvation = -3860.969332 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.99522 -39.67228 -38.76930 -37.00820 -36.40922 -34.69757 -32.53125 -32.01556 -30.97275 -30.13027 -28.04042 -27.16065 -26.19453 -25.05941 -22.40923 -21.95273 -21.11912 -20.35746 -19.79754 -17.96114 -17.46105 -17.26775 -16.91489 -16.67434 -16.04743 -15.37421 -15.30192 -14.56915 -14.46410 -14.32217 -14.15229 -13.90800 -13.71641 -13.66859 -13.53103 -13.33180 -12.89293 -12.72837 -12.68686 -12.53578 -12.23656 -11.82434 -11.64300 -11.49951 -11.25828 -10.85206 -10.75423 -10.58591 -10.39952 -10.38853 -9.81279 -9.34266 -9.29787 -9.22765 -8.80257 -8.13214 -7.14786 -6.42506 -4.00925 2.20384 2.22501 2.27163 2.48092 2.65420 2.99641 3.14791 3.16698 3.21687 3.86132 3.99264 4.07604 4.42667 4.49121 4.56067 4.83207 4.87947 4.91961 4.94294 5.10300 5.10824 5.24083 5.26095 5.26989 5.33593 5.53367 5.53624 5.65017 5.74058 5.85980 5.98527 6.15093 6.23780 6.43677 6.60751 6.72012 6.93111 7.07525 7.24726 7.29800 7.38604 7.47488 7.75405 7.85881 8.02953 8.19534 9.03429 9.73827 10.75658 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.002235 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.300826 B =12525.241011 C =13275.208963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.625 5.625 3 C 0.100 3.900 4 C 0.138 3.862 5 H 0.111 0.889 6 N -0.733 5.733 7 C 0.511 3.489 8 O -0.512 6.512 9 C -0.078 4.078 10 C -0.173 4.173 11 C -0.059 4.059 12 C -0.192 4.192 13 C 0.157 3.843 14 O -0.178 6.178 15 C -0.390 4.390 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.232 4.232 24 C -0.056 4.056 25 C -0.169 4.169 26 C 0.521 3.479 27 O -0.529 6.529 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.401 0.599 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.269 0.731 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.096 3.471 -11.258 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.361 5.361 3 C -0.024 4.024 4 C 0.032 3.968 5 H 0.129 0.871 6 N -0.388 5.388 7 C 0.298 3.702 8 O -0.385 6.385 9 C -0.118 4.118 10 C -0.174 4.174 11 C -0.078 4.078 12 C -0.211 4.211 13 C 0.103 3.897 14 O -0.082 6.082 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.252 4.252 24 C -0.074 4.074 25 C -0.210 4.210 26 C 0.309 3.691 27 O -0.405 6.405 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.236 0.764 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.079 0.921 39 H 0.144 0.856 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -23.874 2.598 -10.152 26.073 hybrid contribution 0.298 -0.509 -0.610 0.848 sum -23.577 2.089 -10.762 26.001 Atomic orbital electron populations 1.21587 0.77743 1.03950 1.01627 1.48146 1.06652 1.07038 1.74276 1.22309 0.89945 0.87661 1.02488 1.21705 0.86136 0.90002 0.98990 0.87061 1.46045 1.09082 1.54709 1.28953 1.21166 0.82464 0.80970 0.85561 1.90776 1.80822 1.43134 1.23731 1.20401 0.91780 1.00551 0.99054 1.18609 0.95691 1.00006 1.03104 1.20392 0.95251 0.97536 0.94584 1.20159 0.95238 1.00951 1.04757 1.19389 0.86511 0.93182 0.90618 1.83977 1.25012 1.41659 1.57510 1.21379 1.04339 1.00295 1.20628 0.89009 1.25296 0.96967 0.98980 0.95366 1.70054 1.23640 1.35207 1.20897 0.85643 0.79283 0.79874 0.78606 1.19099 1.20176 1.20145 1.21111 0.99406 1.03232 1.01426 1.20509 0.93366 0.95693 0.97857 1.22863 0.94286 0.98225 1.05647 1.20926 0.89155 0.84308 0.74704 1.90737 1.78570 1.21113 1.50076 0.89775 0.91860 0.91964 0.90390 0.89339 0.76427 0.88873 0.88809 0.87384 0.86558 0.92106 0.85589 0.87825 0.87110 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 11.14 59.85 0.67 1.17 16 2 N -0.63 -4.60 3.33 -180.17 -0.60 -5.20 16 3 C 0.10 0.47 7.06 -3.03 -0.02 0.45 16 4 C 0.14 1.02 3.44 -66.21 -0.23 0.79 16 5 H 0.11 1.02 7.72 -51.93 -0.40 0.62 16 6 N -0.73 -5.19 5.18 -52.13 -0.27 -5.46 16 7 C 0.51 5.98 7.82 -10.99 -0.09 5.89 16 8 O -0.51 -8.72 15.78 5.55 0.09 -8.63 16 9 C -0.08 -0.85 5.83 -29.04 -0.17 -1.01 16 10 C -0.17 -2.85 4.38 -104.58 -0.46 -3.31 16 11 C -0.06 -1.05 9.69 -39.61 -0.38 -1.44 16 12 C -0.19 -4.12 9.99 -39.39 -0.39 -4.51 16 13 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 14 O -0.18 -5.17 9.76 0.03 0.00 -5.17 16 15 C -0.39 -11.07 9.49 30.89 0.29 -10.78 16 16 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 18 N -0.86 -25.60 13.67 55.48 0.76 -24.84 16 19 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 C -0.23 -5.15 9.17 -39.40 -0.36 -5.52 16 24 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 25 C -0.17 -1.53 6.59 -26.74 -0.18 -1.71 16 26 C 0.52 5.53 8.02 -10.86 -0.09 5.44 16 27 O -0.53 -7.81 17.35 5.56 0.10 -7.71 16 28 H 0.08 0.58 7.53 -51.93 -0.39 0.19 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.22 7.78 -51.93 -0.40 -0.19 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.40 1.44 8.36 -40.82 -0.34 1.09 16 34 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 35 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 40 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.11 0.90 8.08 -51.93 -0.42 0.48 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -37.32 361.94 -7.10 -44.42 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.46 Total: 2.69 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -2.14 Total: -11.38 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.11 Total: -35.50 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.18 Total: -21.52 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.32 -7.10 -44.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264679018.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.933 kcal (2) G-P(sol) polarization free energy of solvation -37.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds