Wall clock time and date at job start Fri Apr 10 2020 18:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46771 * 124.34894 * 2 1 4 4 C 1.54653 * 105.38012 * 162.85920 * 3 2 1 5 5 H 1.09003 * 111.22591 * 267.57460 * 4 3 2 6 6 N 1.46505 * 110.82218 * 143.78109 * 4 3 2 7 7 C 1.34775 * 120.00417 * 161.34778 * 6 4 3 8 8 O 1.21289 * 119.99676 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00011 * 180.02562 * 7 6 4 10 10 C 1.50701 * 109.46999 * 179.97438 * 9 7 6 11 11 C 1.38295 * 119.92934 * 269.72620 * 10 9 7 12 12 C 1.38104 * 120.06868 * 179.72688 * 11 10 9 13 13 C 1.38879 * 119.92682 * 0.56396 * 12 11 10 14 14 O 1.35756 * 120.06554 * 179.68355 * 13 12 11 15 15 C 1.34830 * 116.99889 * 174.48869 * 14 13 12 16 16 H 1.08000 * 119.99985 * 5.05766 * 15 14 13 17 17 C 1.38655 * 120.00107 * 185.05773 * 15 14 13 18 18 N 1.31560 * 119.99616 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00257 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46678 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47231 * 119.99947 * 19 17 15 22 22 H 1.48497 * 109.47178 * 240.00317 * 19 17 15 23 23 C 1.38870 * 119.86794 * 359.70669 * 13 12 11 24 24 C 1.38108 * 119.92678 * 0.02562 * 23 13 12 25 25 C 1.54623 * 101.69155 * 25.76566 * 4 3 2 26 26 C 1.34422 * 124.35252 * 180.30319 * 2 1 3 27 27 O 1.21279 * 124.93793 * 0.38340 * 26 2 1 28 28 H 1.09005 * 109.46611 * 179.72738 * 1 2 3 29 29 H 1.08997 * 109.47025 * 299.71819 * 1 2 3 30 30 H 1.08996 * 109.47528 * 59.72301 * 1 2 3 31 31 H 1.09003 * 110.23976 * 281.98797 * 3 2 1 32 32 H 1.08997 * 110.24221 * 43.98613 * 3 2 1 33 33 H 0.97005 * 119.99794 * 341.34142 * 6 4 3 34 34 H 1.09004 * 109.46985 * 299.99100 * 9 7 6 35 35 H 1.08999 * 109.47337 * 59.99696 * 9 7 6 36 36 H 1.08001 * 119.96658 * 359.97438 * 11 10 9 37 37 H 1.08002 * 120.03660 * 180.26923 * 12 11 10 38 38 H 0.97005 * 119.99774 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.04216 * 179.97438 * 23 13 12 40 40 H 1.07996 * 119.96328 * 180.02562 * 24 23 13 41 41 H 1.08998 * 110.49048 * 216.31240 * 25 4 3 42 42 H 1.09001 * 110.48555 * 93.66494 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7010 0.7464 0.4395 5 1 3.8276 0.8369 1.5183 6 7 4.7418 1.4926 -0.2721 7 6 5.9994 1.5229 0.2116 8 8 6.2694 0.9327 1.2362 9 6 7.0698 2.2909 -0.5201 10 6 8.3747 2.1662 0.2234 11 6 8.7061 3.0923 1.1956 12 6 9.8986 2.9775 1.8826 13 6 10.7706 1.9375 1.5882 14 8 11.9465 1.8257 2.2574 15 6 12.6931 0.7318 2.0045 16 1 12.3877 0.0350 1.2380 17 6 13.8529 0.5015 2.7285 18 7 14.2251 1.3507 3.6619 19 14 14.8869 -1.0144 2.3787 20 1 14.2556 -1.8038 1.2908 21 1 16.2502 -0.5983 1.9621 22 1 14.9765 -1.8464 3.6055 23 6 10.4375 1.0124 0.6075 24 6 9.2410 1.1294 -0.0721 25 6 3.6899 -0.7378 0.0061 26 6 2.2235 -1.1097 -0.0059 27 8 1.7946 -2.2441 -0.0185 28 1 -0.3633 -1.0277 -0.0049 29 1 -0.3633 0.5094 0.8925 30 1 -0.3634 0.5181 -0.8874 31 1 2.3305 1.6430 -1.0004 32 1 1.8984 1.9383 0.7102 33 1 4.5258 1.9648 -1.0914 34 1 7.1842 1.8863 -1.5258 35 1 6.7858 3.3415 -0.5812 36 1 8.0299 3.9038 1.4205 37 1 10.1550 3.6985 2.6448 38 1 15.0368 1.1897 4.1682 39 1 11.1137 0.2027 0.3760 40 1 8.9811 0.4101 -0.8346 41 1 4.2327 -1.3497 0.7266 42 1 4.1195 -0.8477 -0.9896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264679018.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:37 Heat of formation + Delta-G solvation = -92.770467 kcal Electronic energy + Delta-G solvation = -25250.274358 eV Core-core repulsion = 21388.072803 eV Total energy + Delta-G solvation = -3862.201555 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.72133 -40.90764 -40.20826 -38.27610 -37.64052 -35.46060 -34.38601 -33.13262 -32.05160 -31.72791 -28.76923 -28.17723 -27.35864 -26.64130 -23.60495 -23.27487 -22.18114 -21.44384 -20.57488 -19.82196 -18.84502 -18.23146 -17.90888 -17.42470 -16.81380 -16.55539 -16.38868 -16.15962 -15.84143 -15.61412 -15.48457 -14.98703 -14.80518 -14.73297 -14.47775 -14.44917 -14.30291 -14.01795 -13.59680 -13.36178 -13.21167 -12.97138 -12.91522 -12.63771 -12.46139 -12.31850 -12.23436 -12.19892 -12.09756 -11.24961 -11.15263 -10.89349 -10.72424 -10.09870 -9.79720 -9.72455 -8.86730 -8.47091 -6.14813 0.65291 0.70671 1.33784 1.41349 1.42363 1.52380 1.75306 1.90090 2.17499 2.25414 2.86025 3.18552 3.29500 3.47249 3.55646 3.78947 3.92202 3.99743 4.10292 4.21998 4.28594 4.37590 4.44724 4.55842 4.58281 4.63495 4.67997 4.79106 4.80937 4.85309 4.88743 4.90015 5.13629 5.16845 5.34573 5.45827 5.48042 5.60551 5.74972 5.81845 5.96303 6.04421 6.27795 6.65971 6.97886 7.01445 7.40804 7.80157 8.76646 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.002235 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.300826 B =12525.241011 C =13275.208963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.619 5.619 3 C 0.107 3.893 4 C 0.141 3.859 5 H 0.092 0.908 6 N -0.704 5.704 7 C 0.515 3.485 8 O -0.576 6.576 9 C -0.077 4.077 10 C -0.145 4.145 11 C -0.056 4.056 12 C -0.208 4.208 13 C 0.109 3.891 14 O -0.235 6.235 15 C -0.412 4.412 16 H 0.099 0.901 17 C -0.026 4.026 18 N -0.922 5.922 19 Si 1.019 2.981 20 H -0.253 1.253 21 H -0.265 1.265 22 H -0.270 1.270 23 C -0.246 4.246 24 C -0.061 4.061 25 C -0.166 4.166 26 C 0.512 3.488 27 O -0.584 6.584 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.425 0.575 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.151 0.849 37 H 0.111 0.889 38 H 0.272 0.728 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.085 0.915 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.451 4.794 -14.428 31.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.353 5.353 3 C -0.016 4.016 4 C 0.034 3.966 5 H 0.110 0.890 6 N -0.360 5.360 7 C 0.303 3.697 8 O -0.453 6.453 9 C -0.116 4.116 10 C -0.146 4.146 11 C -0.074 4.074 12 C -0.227 4.227 13 C 0.059 3.941 14 O -0.142 6.142 15 C -0.488 4.488 16 H 0.117 0.883 17 C -0.223 4.223 18 N -0.560 5.560 19 Si 0.839 3.161 20 H -0.176 1.176 21 H -0.190 1.190 22 H -0.195 1.195 23 C -0.266 4.266 24 C -0.079 4.079 25 C -0.208 4.208 26 C 0.301 3.699 27 O -0.464 6.464 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.264 0.736 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.168 0.832 37 H 0.129 0.871 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.156 0.844 41 H 0.103 0.897 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -27.330 4.007 -13.407 30.704 hybrid contribution 0.918 -0.766 0.216 1.215 sum -26.412 3.241 -13.191 29.700 Atomic orbital electron populations 1.21774 0.76456 1.03325 1.03846 1.48299 1.07635 1.06986 1.72344 1.22498 0.87324 0.86635 1.05117 1.21616 0.87849 0.88981 0.98127 0.88956 1.45685 1.07512 1.53521 1.29248 1.21214 0.83738 0.80146 0.84626 1.90795 1.81981 1.45979 1.26585 1.20549 0.87962 1.03566 0.99503 1.19303 0.97218 0.97155 1.00897 1.20916 0.93972 0.98861 0.93661 1.20471 0.96460 1.00266 1.05520 1.19974 0.86600 0.95429 0.92052 1.83935 1.27314 1.42791 1.60177 1.21840 1.04988 1.00774 1.21188 0.88332 1.26605 0.98112 1.02586 0.94976 1.70196 1.24842 1.37977 1.23000 0.84522 0.77371 0.75365 0.78883 1.17614 1.19008 1.19478 1.21231 1.01023 1.02603 1.01712 1.20959 0.92021 0.96973 0.97967 1.22798 0.93294 0.99130 1.05557 1.21166 0.90037 0.84299 0.74432 1.90703 1.79453 1.23327 1.52928 0.91916 0.89967 0.89319 0.86878 0.86934 0.73597 0.85100 0.84446 0.83155 0.87131 0.91875 0.86833 0.84403 0.89666 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 11.14 127.77 1.42 2.12 16 2 N -0.62 -7.29 3.33 -842.54 -2.81 -10.10 16 3 C 0.11 0.48 7.06 86.89 0.61 1.10 16 4 C 0.14 1.61 3.44 46.11 0.16 1.77 16 5 H 0.09 1.51 7.72 -2.39 -0.02 1.49 16 6 N -0.70 -6.29 5.18 -437.24 -2.27 -8.55 16 7 C 0.51 9.66 7.82 87.66 0.69 10.35 16 8 O -0.58 -18.34 15.78 -3.06 -0.05 -18.38 16 9 C -0.08 -1.17 5.83 29.10 0.17 -1.00 16 10 C -0.14 -4.23 4.38 -19.84 -0.09 -4.31 16 11 C -0.06 -1.85 9.69 22.25 0.22 -1.64 16 12 C -0.21 -9.14 9.99 22.39 0.22 -8.92 16 13 C 0.11 5.69 6.65 22.57 0.15 5.84 16 14 O -0.24 -14.72 9.76 -22.80 -0.22 -14.94 16 15 C -0.41 -24.91 9.49 67.92 0.64 -24.26 16 16 H 0.10 5.53 5.20 -2.91 -0.02 5.51 16 17 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 18 N -0.92 -58.12 13.67 21.61 0.30 -57.82 16 19 Si 1.02 44.40 29.55 68.60 2.03 46.43 16 20 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 23 C -0.25 -11.21 9.17 22.39 0.21 -11.00 16 24 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 25 C -0.17 -2.78 6.59 30.59 0.20 -2.58 16 26 C 0.51 10.39 8.02 87.90 0.71 11.10 16 27 O -0.58 -17.66 17.35 -3.03 -0.05 -17.71 16 28 H 0.06 0.80 7.53 -2.38 -0.02 0.79 16 29 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.11 -0.16 7.78 -2.39 -0.02 -0.18 16 32 H 0.11 0.11 8.14 -2.39 -0.02 0.10 16 33 H 0.42 0.03 8.36 -92.70 -0.78 -0.74 16 34 H 0.13 1.19 8.08 -2.38 -0.02 1.17 16 35 H 0.14 1.08 8.08 -2.39 -0.02 1.06 16 36 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 37 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 38 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 39 H 0.11 5.31 5.64 -2.91 -0.02 5.29 16 40 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 41 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.12 1.69 8.08 -2.39 -0.02 1.67 16 Total: -1.00 -93.32 361.94 3.20 -90.12 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.28 Total: 15.36 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 5.99 Total: -24.40 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -4.78 Total: -76.47 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -0.32 Total: -51.04 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -93.32 3.20 -90.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264679018.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.650 kcal (2) G-P(sol) polarization free energy of solvation -93.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds