Wall clock time and date at job start Fri Apr 10 2020 18:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34772 * 120.00211 * 2 1 4 4 O 1.21599 * 120.00195 * 177.10635 * 3 2 1 5 5 C 1.47536 * 120.00023 * 357.10183 * 3 2 1 6 6 C 1.39666 * 120.19706 * 332.17697 * 5 3 2 7 7 C 1.37822 * 119.91939 * 179.97438 * 6 5 3 8 8 C 1.38578 * 120.32585 * 359.97438 * 7 6 5 9 9 C 1.38030 * 120.39716 * 359.75103 * 8 7 6 10 10 C 1.38832 * 120.07486 * 0.50755 * 9 8 7 11 11 O 1.35508 * 120.16454 * 179.77079 * 10 9 8 12 12 C 1.34818 * 116.99945 * 5.59133 * 11 10 9 13 13 H 1.08001 * 120.00222 * 354.93039 * 12 11 10 14 14 C 1.38699 * 120.00041 * 174.93342 * 12 11 10 15 15 N 1.31522 * 120.00151 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00077 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46906 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47447 * 119.99688 * 16 14 12 19 19 H 1.48499 * 109.47382 * 239.99939 * 16 14 12 20 20 C 1.46501 * 119.99571 * 179.97438 * 2 1 3 21 21 H 1.09003 * 110.43251 * 180.70604 * 20 2 1 22 22 C 1.54625 * 110.48958 * 58.16346 * 20 2 1 23 23 C 1.54826 * 101.60396 * 266.07979 * 22 20 2 24 24 N 1.46760 * 105.49490 * 334.56384 * 23 22 20 25 25 C 1.46503 * 124.34842 * 197.05476 * 24 23 22 26 26 C 1.34418 * 111.30015 * 17.04013 * 24 23 22 27 27 O 1.21286 * 124.93964 * 179.62979 * 26 24 23 28 28 H 1.09002 * 109.46692 * 96.12638 * 1 2 3 29 29 H 1.08994 * 109.47245 * 216.12447 * 1 2 3 30 30 H 1.09001 * 109.47082 * 336.13086 * 1 2 3 31 31 H 1.08000 * 120.04130 * 359.97438 * 6 5 3 32 32 H 1.08005 * 119.84232 * 179.97438 * 7 6 5 33 33 H 1.08000 * 119.79972 * 179.97438 * 8 7 6 34 34 H 1.07999 * 119.95741 * 180.27442 * 9 8 7 35 35 H 0.96998 * 119.99522 * 0.02562 * 15 14 12 36 36 H 1.09003 * 110.96454 * 24.23718 * 22 20 2 37 37 H 1.08996 * 110.97423 * 147.99527 * 22 20 2 38 38 H 1.09000 * 110.21739 * 215.56801 * 23 22 20 39 39 H 1.09001 * 110.32797 * 93.62341 * 23 22 20 40 40 H 1.09005 * 109.46630 * 179.97438 * 25 24 23 41 41 H 1.08996 * 109.47388 * 299.95071 * 25 24 23 42 42 H 1.09000 * 109.46869 * 59.95576 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3538 1.1678 0.0532 5 6 1.4027 2.4440 -0.0646 6 6 0.1529 2.5037 -0.6850 7 6 -0.5301 3.6994 -0.7417 8 6 0.0168 4.8447 -0.1851 9 6 1.2485 4.7996 0.4362 10 6 1.9533 3.6051 0.4980 11 8 3.1647 3.5598 1.1035 12 6 3.5793 4.6806 1.7277 13 1 2.9924 5.5847 1.6604 14 6 4.7595 4.6725 2.4562 15 7 5.4740 3.5714 2.5385 16 14 5.3335 6.2252 3.3217 17 1 4.3586 7.3182 3.0758 18 1 5.4341 5.9702 4.7811 19 1 6.6643 6.6221 2.7956 20 6 2.1974 -1.2688 0.0006 21 1 3.2722 -1.0877 0.0131 22 6 1.8063 -2.1201 -1.2296 23 6 0.6794 -3.0083 -0.6480 24 7 0.9442 -3.0839 0.7935 25 6 0.3624 -4.0866 1.6893 26 6 1.7894 -2.1152 1.1861 27 8 2.1699 -1.9450 2.3251 28 1 -0.3633 -0.1097 -1.0218 29 1 -0.3633 -0.8300 0.6058 30 1 -0.3633 0.9398 0.4158 31 1 -0.2779 1.6139 -1.1199 32 1 -1.4964 3.7443 -1.2221 33 1 -0.5256 5.7773 -0.2347 34 1 1.6661 5.6955 0.8714 35 1 5.1757 2.7651 2.0894 36 1 1.4320 -1.4902 -2.0366 37 1 2.6467 -2.7263 -1.5677 38 1 0.7176 -4.0034 -1.0912 39 1 -0.2939 -2.5523 -0.8294 40 1 0.7220 -3.9189 2.7046 41 1 -0.7242 -4.0036 1.6708 42 1 0.6565 -5.0829 1.3593 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265629845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:43 Heat of formation + Delta-G solvation = -35.755140 kcal Electronic energy + Delta-G solvation = -27352.380073 eV Core-core repulsion = 23492.650888 eV Total energy + Delta-G solvation = -3859.729185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.00022 -39.63328 -38.16039 -36.55884 -36.53029 -34.98199 -32.36343 -32.30316 -30.33952 -29.01469 -27.86102 -27.01974 -26.02626 -24.96513 -23.18118 -21.91961 -21.45846 -19.91115 -19.23500 -18.41575 -17.32208 -17.07373 -16.65825 -16.20127 -15.58723 -15.34558 -14.90805 -14.73724 -14.39705 -13.99308 -13.94266 -13.75130 -13.69354 -13.40725 -13.25380 -12.89151 -12.85751 -12.72721 -12.51953 -12.41961 -12.23742 -11.66959 -11.45129 -11.31934 -11.18935 -10.82299 -10.70835 -10.49488 -10.31579 -10.09239 -9.60490 -9.11180 -8.90702 -8.79894 -8.41911 -8.30511 -7.39779 -6.78572 -4.06837 1.63869 2.23406 2.31168 2.79998 3.24172 3.32960 3.40668 3.41784 3.47587 4.09560 4.19488 4.31784 4.51605 4.65854 4.76632 4.93153 5.03169 5.10883 5.13367 5.17385 5.18341 5.23314 5.35825 5.47382 5.50175 5.53908 5.66360 5.68564 5.74970 5.79669 5.94193 6.07841 6.32295 6.46150 6.53208 6.69453 6.87326 6.91183 6.99772 7.17886 7.44023 7.58530 7.69344 8.10677 8.38866 8.76377 8.89396 9.57040 10.65866 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.004272 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.278453 B = 6552.672512 C = 7879.154029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.606 5.606 3 C 0.571 3.429 4 O -0.511 6.511 5 C -0.229 4.229 6 C -0.052 4.052 7 C -0.231 4.231 8 C -0.050 4.050 9 C -0.234 4.234 10 C 0.194 3.806 11 O -0.156 6.156 12 C -0.480 4.480 13 H 0.088 0.912 14 C 0.014 3.986 15 N -0.861 5.861 16 Si 1.103 2.897 17 H -0.282 1.282 18 H -0.278 1.278 19 H -0.278 1.278 20 C 0.115 3.885 21 H 0.133 0.867 22 C -0.144 4.144 23 C 0.103 3.897 24 N -0.627 5.627 25 C 0.094 3.906 26 C 0.510 3.490 27 O -0.510 6.510 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.133 0.867 35 H 0.294 0.706 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.458 -11.357 -8.429 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.343 5.343 3 C 0.363 3.637 4 O -0.385 6.385 5 C -0.234 4.234 6 C -0.070 4.070 7 C -0.250 4.250 8 C -0.068 4.068 9 C -0.253 4.253 10 C 0.135 3.865 11 O -0.055 6.055 12 C -0.555 4.555 13 H 0.105 0.895 14 C -0.195 4.195 15 N -0.491 5.491 16 Si 0.927 3.073 17 H -0.208 1.208 18 H -0.204 1.204 19 H -0.204 1.204 20 C 0.007 3.993 21 H 0.151 0.849 22 C -0.183 4.183 23 C -0.020 4.020 24 N -0.364 5.364 25 C -0.048 4.048 26 C 0.295 3.705 27 O -0.382 6.382 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.147 0.853 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.151 0.849 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.121 -10.882 -6.685 17.608 hybrid contribution -1.607 -0.668 -1.039 2.027 sum -13.729 -11.550 -7.724 19.533 Atomic orbital electron populations 1.22368 0.80131 1.04087 1.00836 1.47448 1.06338 1.04043 1.76460 1.18334 0.87152 0.82828 0.75415 1.90826 1.13435 1.86386 1.47839 1.18639 0.98162 0.91500 1.15105 1.21336 0.92046 0.97984 0.95622 1.20503 1.01611 0.93248 1.09654 1.20932 0.94209 0.97500 0.94203 1.21157 0.97378 0.98487 1.08249 1.19065 0.84934 0.91821 0.90651 1.83789 1.26360 1.38083 1.57281 1.22468 1.10909 0.88862 1.33268 0.89455 1.26651 0.91755 1.05063 0.96062 1.70396 1.38298 1.02273 1.38092 0.82998 0.76325 0.71666 0.76322 1.20783 1.20380 1.20358 1.21562 1.01032 0.83996 0.92722 0.84893 1.23058 0.99114 0.98279 0.97825 1.22180 0.99009 1.00920 0.79919 1.48195 1.47153 1.31529 1.09482 1.21543 0.98029 0.90452 0.94727 1.21248 0.78258 0.80908 0.90112 1.90764 1.55712 1.70495 1.21263 0.92339 0.92431 0.88641 0.85278 0.87098 0.87070 0.84932 0.89445 0.88350 0.88843 0.90235 0.90930 0.89948 0.92124 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 7.22 59.85 0.43 1.28 16 2 N -0.61 -10.20 2.81 -175.17 -0.49 -10.69 16 3 C 0.57 12.65 7.39 -12.47 -0.09 12.56 16 4 O -0.51 -13.71 15.04 -14.32 -0.22 -13.92 16 5 C -0.23 -4.98 5.46 -104.81 -0.57 -5.55 16 6 C -0.05 -0.86 7.48 -39.20 -0.29 -1.16 16 7 C -0.23 -3.68 10.02 -39.61 -0.40 -4.08 16 8 C -0.05 -0.88 10.03 -39.53 -0.40 -1.27 16 9 C -0.23 -5.09 9.16 -39.44 -0.36 -5.45 16 10 C 0.19 4.88 6.63 -38.60 -0.26 4.62 16 11 O -0.16 -4.64 7.61 -18.77 -0.14 -4.78 16 12 C -0.48 -13.92 9.49 30.90 0.29 -13.63 16 13 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 14 C 0.01 0.39 5.49 -17.51 -0.10 0.30 16 15 N -0.86 -27.20 13.70 55.48 0.76 -26.44 16 16 Si 1.10 24.38 29.92 -169.99 -5.09 19.30 16 17 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 C 0.11 1.75 3.42 -67.94 -0.23 1.52 16 21 H 0.13 2.40 6.98 -51.93 -0.36 2.04 16 22 C -0.14 -1.35 6.54 -24.91 -0.16 -1.51 16 23 C 0.10 0.79 6.49 -2.94 -0.02 0.77 16 24 N -0.63 -6.98 3.07 -180.07 -0.55 -7.53 16 25 C 0.09 0.82 11.14 59.85 0.67 1.49 16 26 C 0.51 8.21 6.64 -10.86 -0.07 8.14 16 27 O -0.51 -10.82 17.35 5.55 0.10 -10.72 16 28 H 0.06 0.53 7.22 -51.93 -0.38 0.15 16 29 H 0.06 0.67 6.32 -51.93 -0.33 0.34 16 30 H 0.10 1.31 5.04 -51.93 -0.26 1.04 16 31 H 0.13 1.66 4.68 -52.49 -0.25 1.42 16 32 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.13 2.90 5.64 -52.49 -0.30 2.61 16 35 H 0.29 9.88 7.97 -40.82 -0.33 9.55 16 36 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.46 7.30 -51.93 -0.38 0.08 16 40 H 0.08 0.88 7.53 -51.93 -0.39 0.48 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -38.43 344.08 -7.00 -45.43 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.99 Total: 6.16 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.56 Total: -1.98 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.29 Total: -44.66 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.26 Total: -29.42 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.09 Total: 19.30 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -38.43 -7.00 -45.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265629845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.670 kcal (2) G-P(sol) polarization free energy of solvation -38.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds