Wall clock time and date at job start Fri Apr 10 2020 18:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34770 * 120.00452 * 2 1 4 4 O 1.21284 * 120.00056 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00045 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.51301 * 55.00669 * 5 3 2 7 7 C 1.53293 * 109.51828 * 294.90129 * 5 3 2 8 8 N 1.47143 * 108.38946 * 187.72577 * 7 5 3 9 9 C 1.34780 * 120.98319 * 230.51443 * 8 7 5 10 10 O 1.21586 * 119.99729 * 356.67561 * 9 8 7 11 11 C 1.47636 * 120.00296 * 176.67790 * 9 8 7 12 12 C 1.40016 * 119.89359 * 33.19510 * 11 9 8 13 13 C 1.36316 * 120.10746 * 179.71674 * 12 11 9 14 14 C 1.40894 * 119.88766 * 0.55550 * 13 12 11 15 15 C 1.41112 * 120.09818 * 179.74243 * 14 13 12 16 16 H 1.07992 * 120.00164 * 334.30886 * 15 14 13 17 17 C 1.40227 * 119.99718 * 154.31130 * 15 14 13 18 18 N 1.30640 * 120.00130 * 160.80917 * 17 15 14 19 19 Si 1.86806 * 119.99898 * 340.81221 * 17 15 14 20 20 H 1.48498 * 109.47533 * 95.16208 * 19 17 15 21 21 H 1.48503 * 109.47012 * 215.16054 * 19 17 15 22 22 H 1.48498 * 109.47240 * 335.16063 * 19 17 15 23 23 C 1.40883 * 119.79608 * 359.71531 * 14 13 12 24 24 C 1.36325 * 119.89205 * 0.02562 * 23 14 13 25 25 C 1.47152 * 118.03904 * 50.53340 * 8 7 5 26 26 C 1.53299 * 108.38349 * 309.46601 * 25 8 7 27 27 O 1.42965 * 109.51273 * 175.10154 * 5 3 2 28 28 H 1.09000 * 109.46843 * 300.00154 * 1 2 3 29 29 H 1.09006 * 109.47162 * 59.99483 * 1 2 3 30 30 H 1.08996 * 109.47755 * 179.97438 * 1 2 3 31 31 H 0.97005 * 119.99423 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.68139 * 307.44915 * 7 5 3 33 33 H 1.08995 * 109.68214 * 67.99480 * 7 5 3 34 34 H 1.08005 * 119.94629 * 359.97438 * 12 11 9 35 35 H 1.07994 * 120.05865 * 180.27755 * 13 12 11 36 36 H 0.97005 * 120.00056 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.05530 * 179.97438 * 23 14 13 38 38 H 1.07993 * 119.94939 * 180.02562 * 24 23 14 39 39 H 1.08998 * 109.68078 * 69.19009 * 25 8 7 40 40 H 1.09003 * 109.68293 * 189.70862 * 25 8 7 41 41 H 1.09000 * 109.51350 * 172.21905 * 26 25 8 42 42 H 1.08999 * 109.51441 * 292.32657 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1670 0.0006 6 1 4.0103 0.5776 -0.8408 7 6 4.1575 0.5589 1.3114 8 7 5.6167 0.7395 1.3685 9 6 6.4340 -0.2973 1.6399 10 8 5.9656 -1.3884 1.9015 11 6 7.8981 -0.1081 1.6197 12 6 8.4487 1.1183 2.0109 13 6 9.8002 1.2959 1.9994 14 6 10.6427 0.2466 1.5818 15 6 12.0420 0.4273 1.5629 16 1 12.4571 1.4185 1.4560 17 6 12.8937 -0.6802 1.6831 18 7 14.1394 -0.5909 1.3000 19 14 12.2468 -2.2834 2.3908 20 1 11.8254 -3.1790 1.2838 21 1 13.3171 -2.9432 3.1811 22 1 11.0837 -2.0027 3.2703 23 6 10.0836 -0.9838 1.1836 24 6 8.7312 -1.1537 1.2035 25 6 6.1573 2.0855 1.1210 26 6 5.5484 2.6193 -0.1806 27 8 4.1236 2.5095 -0.1146 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9500 -0.8401 -0.0004 32 1 3.6917 1.0647 2.1572 33 1 3.9176 -0.5039 1.3413 34 1 7.8018 1.9237 2.3263 35 1 10.2243 2.2407 2.3056 36 1 14.7287 -1.3570 1.3834 37 1 10.7254 -1.7908 0.8623 38 1 8.3017 -2.0965 0.8989 39 1 5.8928 2.7450 1.9476 40 1 7.2419 2.0337 1.0254 41 1 5.8270 3.6650 -0.3109 42 1 5.9203 2.0357 -1.0227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273094987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:52 Heat of formation + Delta-G solvation = -67.442483 kcal Electronic energy + Delta-G solvation = -26509.636789 eV Core-core repulsion = 22648.533538 eV Total energy + Delta-G solvation = -3861.103251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69297 -39.54477 -38.13180 -37.32539 -34.97736 -34.59776 -33.94945 -32.23196 -30.69534 -30.09735 -28.47417 -27.09545 -25.74513 -24.47159 -22.99573 -21.72468 -21.13814 -20.63449 -19.28322 -18.03895 -17.82785 -17.05115 -16.76546 -16.09474 -15.85833 -15.54689 -15.41617 -15.00209 -14.82929 -14.57923 -14.25117 -14.05169 -13.72046 -13.24099 -13.09201 -12.92998 -12.77365 -12.63730 -12.60657 -12.43277 -11.96838 -11.87387 -11.70694 -11.05662 -11.00423 -10.89367 -10.50394 -10.31808 -10.09747 -10.03327 -9.74333 -9.45965 -9.39595 -9.18394 -8.48485 -8.00123 -7.84681 -7.31242 -4.81106 1.96280 2.29794 2.53018 2.59813 2.92424 3.06100 3.09065 3.14938 3.44442 3.76597 3.82448 4.27597 4.43515 4.55057 4.72588 4.90738 4.93502 5.06548 5.11539 5.17918 5.20108 5.42131 5.47494 5.49266 5.62662 5.67173 5.76234 5.85012 5.93867 6.03655 6.30247 6.49264 6.56911 6.61936 6.80324 6.84358 7.15372 7.17682 7.25415 7.38599 7.59093 7.74066 7.80592 7.92183 8.01666 8.35548 8.46382 8.65958 9.67566 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029319 B = 0.002950 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.767886 B = 9488.296870 C =10147.365170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.734 5.734 3 C 0.524 3.476 4 O -0.516 6.516 5 C 0.062 3.938 6 H 0.088 0.912 7 C 0.094 3.906 8 N -0.620 5.620 9 C 0.580 3.420 10 O -0.563 6.563 11 C -0.288 4.288 12 C -0.062 4.062 13 C -0.217 4.217 14 C 0.104 3.896 15 C -0.418 4.418 16 H 0.097 0.903 17 C 0.081 3.919 18 N -0.780 5.780 19 Si 0.919 3.081 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.239 1.239 23 C -0.255 4.255 24 C -0.008 4.008 25 C 0.044 3.956 26 C 0.046 3.954 27 O -0.355 6.355 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.405 0.595 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.293 0.707 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.139 0.861 41 H 0.112 0.888 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.785 0.662 -2.632 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.388 5.388 3 C 0.308 3.692 4 O -0.389 6.389 5 C -0.001 4.001 6 H 0.106 0.894 7 C -0.030 4.030 8 N -0.355 5.355 9 C 0.376 3.624 10 O -0.444 6.444 11 C -0.292 4.292 12 C -0.081 4.081 13 C -0.236 4.236 14 C 0.100 3.900 15 C -0.444 4.444 16 H 0.115 0.885 17 C -0.142 4.142 18 N -0.401 5.401 19 Si 0.744 3.256 20 H -0.193 1.193 21 H -0.216 1.216 22 H -0.162 1.162 23 C -0.274 4.274 24 C -0.028 4.028 25 C -0.078 4.078 26 C -0.032 4.032 27 O -0.273 6.273 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.239 0.761 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.092 0.908 40 H 0.156 0.844 41 H 0.130 0.870 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.298 0.982 -2.539 16.523 hybrid contribution 0.369 -1.264 0.199 1.332 sum -15.928 -0.283 -2.341 16.102 Atomic orbital electron populations 1.21555 0.78970 1.02449 1.02474 1.45721 1.08001 1.08525 1.76536 1.20075 0.88755 0.83987 0.76333 1.90727 1.69767 1.31128 1.47326 1.22245 0.91649 0.86852 0.99321 0.89391 1.21943 0.82220 1.02752 0.96056 1.47974 1.05088 1.09652 1.72767 1.18677 0.87099 0.82300 0.74305 1.90656 1.77738 1.25528 1.50441 1.18719 0.89819 0.97561 1.23127 1.20822 0.95303 0.94676 0.97271 1.20671 0.92597 1.00211 1.10127 1.17833 0.93533 0.91275 0.87381 1.19803 0.89600 0.96323 1.38639 0.88531 1.26419 0.94470 1.01414 0.91934 1.69601 1.06486 1.33641 1.30394 0.86205 0.79471 0.79478 0.80397 1.19253 1.21616 1.16215 1.20685 0.94196 0.99441 1.13082 1.20270 0.92995 0.95663 0.93838 1.23405 1.03457 0.83300 0.97679 1.23202 0.79914 1.02841 0.97203 1.88065 1.21639 1.23153 1.94439 0.92042 0.92113 0.90359 0.76083 0.90800 0.87942 0.86828 0.87591 0.89647 0.87860 0.88092 0.90786 0.84417 0.87036 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.70 59.85 0.64 1.27 16 2 N -0.73 -6.38 5.68 -67.08 -0.38 -6.76 16 3 C 0.52 6.54 7.18 -10.99 -0.08 6.46 16 4 O -0.52 -8.47 16.51 -14.28 -0.24 -8.71 16 5 C 0.06 0.76 3.19 -27.73 -0.09 0.67 16 6 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 7 C 0.09 1.24 5.87 -3.54 -0.02 1.21 16 8 N -0.62 -9.48 3.02 -173.47 -0.52 -10.01 16 9 C 0.58 11.04 7.44 -12.42 -0.09 10.95 16 10 O -0.56 -12.05 16.25 5.29 0.09 -11.96 16 11 C -0.29 -5.82 5.55 -104.73 -0.58 -6.40 16 12 C -0.06 -1.16 7.37 -39.61 -0.29 -1.45 16 13 C -0.22 -4.46 9.73 -39.27 -0.38 -4.84 16 14 C 0.10 2.39 5.21 -106.80 -0.56 1.84 16 15 C -0.42 -10.19 9.58 -37.75 -0.36 -10.55 16 16 H 0.10 2.42 8.06 -52.49 -0.42 2.00 16 17 C 0.08 1.94 5.41 -17.31 -0.09 1.85 16 18 N -0.78 -18.85 13.92 55.56 0.77 -18.08 16 19 Si 0.92 19.47 24.43 -169.99 -4.15 15.32 16 20 H -0.27 -5.51 6.65 56.52 0.38 -5.13 16 21 H -0.29 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.24 -5.30 6.80 56.52 0.38 -4.92 16 23 C -0.26 -5.79 7.10 -39.27 -0.28 -6.07 16 24 C -0.01 -0.18 9.53 -39.61 -0.38 -0.56 16 25 C 0.04 0.57 5.06 -3.53 -0.02 0.55 16 26 C 0.05 0.54 6.99 37.31 0.26 0.80 16 27 O -0.36 -4.96 9.93 -55.06 -0.55 -5.51 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.41 2.58 8.83 -40.82 -0.36 2.22 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.10 1.30 7.10 -51.93 -0.37 0.93 16 34 H 0.11 1.76 5.27 -52.48 -0.28 1.48 16 35 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 37 H 0.10 2.33 4.22 -52.49 -0.22 2.11 16 38 H 0.10 2.08 7.96 -52.49 -0.42 1.66 16 39 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 40 H 0.14 1.89 3.72 -52.08 -0.19 1.70 16 41 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -30.83 342.80 -7.38 -38.21 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.24 Total: 6.61 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.32 Total: -4.28 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.13 Total: -34.85 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.70 Total: -26.18 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.15 Total: 15.32 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.83 -7.38 -38.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273094987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.236 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds