Wall clock time and date at job start Fri Apr 10 2020 18:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34770 * 120.00452 * 2 1 4 4 O 1.21284 * 120.00056 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00045 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.51301 * 55.00669 * 5 3 2 7 7 C 1.53293 * 109.51828 * 294.90129 * 5 3 2 8 8 N 1.47143 * 108.38946 * 187.72577 * 7 5 3 9 9 C 1.34780 * 120.98319 * 230.51443 * 8 7 5 10 10 O 1.21586 * 119.99729 * 356.67561 * 9 8 7 11 11 C 1.47636 * 120.00296 * 176.67790 * 9 8 7 12 12 C 1.40016 * 119.89359 * 33.19510 * 11 9 8 13 13 C 1.36316 * 120.10746 * 179.71674 * 12 11 9 14 14 C 1.40894 * 119.88766 * 0.55550 * 13 12 11 15 15 C 1.41112 * 120.09818 * 179.74243 * 14 13 12 16 16 H 1.07992 * 120.00164 * 334.30886 * 15 14 13 17 17 C 1.40227 * 119.99718 * 154.31130 * 15 14 13 18 18 N 1.30640 * 120.00130 * 160.80917 * 17 15 14 19 19 Si 1.86806 * 119.99898 * 340.81221 * 17 15 14 20 20 H 1.48498 * 109.47533 * 95.16208 * 19 17 15 21 21 H 1.48503 * 109.47012 * 215.16054 * 19 17 15 22 22 H 1.48498 * 109.47240 * 335.16063 * 19 17 15 23 23 C 1.40883 * 119.79608 * 359.71531 * 14 13 12 24 24 C 1.36325 * 119.89205 * 0.02562 * 23 14 13 25 25 C 1.47152 * 118.03904 * 50.53340 * 8 7 5 26 26 C 1.53299 * 108.38349 * 309.46601 * 25 8 7 27 27 O 1.42965 * 109.51273 * 175.10154 * 5 3 2 28 28 H 1.09000 * 109.46843 * 300.00154 * 1 2 3 29 29 H 1.09006 * 109.47162 * 59.99483 * 1 2 3 30 30 H 1.08996 * 109.47755 * 179.97438 * 1 2 3 31 31 H 0.97005 * 119.99423 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.68139 * 307.44915 * 7 5 3 33 33 H 1.08995 * 109.68214 * 67.99480 * 7 5 3 34 34 H 1.08005 * 119.94629 * 359.97438 * 12 11 9 35 35 H 1.07994 * 120.05865 * 180.27755 * 13 12 11 36 36 H 0.97005 * 120.00056 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.05530 * 179.97438 * 23 14 13 38 38 H 1.07993 * 119.94939 * 180.02562 * 24 23 14 39 39 H 1.08998 * 109.68078 * 69.19009 * 25 8 7 40 40 H 1.09003 * 109.68293 * 189.70862 * 25 8 7 41 41 H 1.09000 * 109.51350 * 172.21905 * 26 25 8 42 42 H 1.08999 * 109.51441 * 292.32657 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1670 0.0006 6 1 4.0103 0.5776 -0.8408 7 6 4.1575 0.5589 1.3114 8 7 5.6167 0.7395 1.3685 9 6 6.4340 -0.2973 1.6399 10 8 5.9656 -1.3884 1.9015 11 6 7.8981 -0.1081 1.6197 12 6 8.4487 1.1183 2.0109 13 6 9.8002 1.2959 1.9994 14 6 10.6427 0.2466 1.5818 15 6 12.0420 0.4273 1.5629 16 1 12.4571 1.4185 1.4560 17 6 12.8937 -0.6802 1.6831 18 7 14.1394 -0.5909 1.3000 19 14 12.2468 -2.2834 2.3908 20 1 11.8254 -3.1790 1.2838 21 1 13.3171 -2.9432 3.1811 22 1 11.0837 -2.0027 3.2703 23 6 10.0836 -0.9838 1.1836 24 6 8.7312 -1.1537 1.2035 25 6 6.1573 2.0855 1.1210 26 6 5.5484 2.6193 -0.1806 27 8 4.1236 2.5095 -0.1146 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9500 -0.8401 -0.0004 32 1 3.6917 1.0647 2.1572 33 1 3.9176 -0.5039 1.3413 34 1 7.8018 1.9237 2.3263 35 1 10.2243 2.2407 2.3056 36 1 14.7287 -1.3570 1.3834 37 1 10.7254 -1.7908 0.8623 38 1 8.3017 -2.0965 0.8989 39 1 5.8928 2.7450 1.9476 40 1 7.2419 2.0337 1.0254 41 1 5.8270 3.6650 -0.3109 42 1 5.9203 2.0357 -1.0227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273094987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:51 Heat of formation + Delta-G solvation = -88.900262 kcal Electronic energy + Delta-G solvation = -26510.567268 eV Core-core repulsion = 22648.533538 eV Total energy + Delta-G solvation = -3862.033730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.85038 -40.76377 -39.42525 -38.81441 -36.09930 -35.78370 -35.51213 -33.39455 -32.25577 -31.70851 -29.54950 -28.28479 -26.99966 -25.57530 -24.30578 -23.25287 -22.61300 -21.59977 -20.64053 -19.65581 -18.96889 -18.18101 -17.98528 -17.34200 -17.29127 -16.77166 -16.44499 -16.28117 -16.02504 -15.61604 -15.56526 -15.44263 -15.16849 -14.65817 -14.37430 -14.27505 -14.17001 -13.97383 -13.78657 -13.56979 -13.24860 -13.11044 -12.78408 -12.66614 -12.61496 -12.14626 -12.04644 -11.76902 -11.52200 -11.32093 -11.09425 -11.05305 -10.66725 -10.24783 -9.77898 -9.63457 -9.49491 -9.07533 -6.61968 0.30665 0.86608 1.22766 1.31507 1.35962 1.45233 1.75616 1.83789 1.89971 2.05733 2.57034 2.94719 3.44060 3.46847 3.63580 3.70358 3.83751 3.93255 4.17699 4.18588 4.27181 4.33905 4.41750 4.45759 4.55903 4.61511 4.62957 4.75361 4.84029 4.89527 4.93524 4.93956 5.13987 5.29671 5.33170 5.48193 5.61380 5.73432 5.84338 5.87701 6.08828 6.25283 6.31569 6.38854 6.59874 6.70636 7.06823 7.18053 7.97413 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029319 B = 0.002950 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.767886 B = 9488.296870 C =10147.365170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.718 5.718 3 C 0.524 3.476 4 O -0.561 6.561 5 C 0.066 3.934 6 H 0.102 0.898 7 C 0.096 3.904 8 N -0.612 5.612 9 C 0.581 3.419 10 O -0.589 6.589 11 C -0.281 4.281 12 C -0.049 4.049 13 C -0.223 4.223 14 C 0.092 3.908 15 C -0.454 4.454 16 H 0.075 0.925 17 C 0.055 3.945 18 N -0.816 5.816 19 Si 0.962 3.038 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.255 1.255 23 C -0.267 4.267 24 C -0.021 4.021 25 C 0.040 3.960 26 C 0.047 3.953 27 O -0.373 6.373 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.114 0.886 31 H 0.418 0.582 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.154 0.846 35 H 0.121 0.879 36 H 0.301 0.699 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.193 0.538 -2.511 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.371 5.371 3 C 0.308 3.692 4 O -0.439 6.439 5 C 0.004 3.996 6 H 0.120 0.880 7 C -0.027 4.027 8 N -0.345 5.345 9 C 0.375 3.625 10 O -0.472 6.472 11 C -0.286 4.286 12 C -0.067 4.067 13 C -0.242 4.242 14 C 0.088 3.912 15 C -0.481 4.481 16 H 0.093 0.907 17 C -0.165 4.165 18 N -0.439 5.439 19 Si 0.786 3.214 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.179 1.179 23 C -0.286 4.286 24 C -0.040 4.040 25 C -0.082 4.082 26 C -0.029 4.029 27 O -0.292 6.292 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.255 0.745 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.171 0.829 35 H 0.139 0.861 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.111 0.889 40 H 0.150 0.850 41 H 0.155 0.845 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.714 0.842 -2.433 18.890 hybrid contribution 0.816 -1.162 0.137 1.426 sum -17.897 -0.319 -2.296 18.047 Atomic orbital electron populations 1.21751 0.77697 1.04634 1.01831 1.45698 1.08880 1.08065 1.74477 1.20157 0.88797 0.84263 0.75964 1.90710 1.70468 1.32825 1.49902 1.22268 0.91665 0.86506 0.99206 0.88041 1.22055 0.80582 1.03308 0.96762 1.47939 1.05869 1.09667 1.71060 1.18449 0.86817 0.82719 0.74508 1.90650 1.78006 1.26751 1.51768 1.19077 0.90912 0.97541 1.21024 1.21173 0.94960 0.95064 0.95456 1.20926 0.93277 1.00265 1.09697 1.18030 0.93395 0.92288 0.87461 1.19769 0.90576 0.95742 1.42009 0.90706 1.26895 0.94555 1.03191 0.91901 1.69609 1.07293 1.34827 1.32210 0.85547 0.78661 0.77384 0.79784 1.18589 1.20174 1.17928 1.20750 0.94784 0.99429 1.13682 1.20445 0.92771 0.96589 0.94173 1.23550 1.03034 0.82263 0.99320 1.23321 0.78888 1.04434 0.96304 1.88068 1.22693 1.23964 1.94426 0.92788 0.92694 0.86770 0.74512 0.90404 0.87399 0.82935 0.86089 0.88791 0.88258 0.87458 0.88919 0.85029 0.84524 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.70 127.77 1.37 2.35 16 2 N -0.72 -10.69 5.68 -484.53 -2.75 -13.45 16 3 C 0.52 12.04 7.18 87.66 0.63 12.66 16 4 O -0.56 -17.82 16.51 15.92 0.26 -17.56 16 5 C 0.07 1.45 3.19 29.94 0.10 1.55 16 6 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 7 C 0.10 2.24 5.87 86.35 0.51 2.75 16 8 N -0.61 -16.78 3.02 -821.00 -2.48 -19.25 16 9 C 0.58 20.54 7.44 86.72 0.65 21.19 16 10 O -0.59 -23.90 16.25 -3.99 -0.06 -23.96 16 11 C -0.28 -10.74 5.55 -19.93 -0.11 -10.85 16 12 C -0.05 -1.68 7.37 22.25 0.16 -1.51 16 13 C -0.22 -8.85 9.73 22.47 0.22 -8.63 16 14 C 0.09 4.25 5.21 -21.28 -0.11 4.14 16 15 C -0.45 -22.86 9.58 23.46 0.22 -22.64 16 16 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 17 C 0.05 2.67 5.41 85.35 0.46 3.13 16 18 N -0.82 -40.60 13.92 21.87 0.30 -40.30 16 19 Si 0.96 40.42 24.43 68.60 1.68 42.10 16 20 H -0.26 -10.52 6.65 99.48 0.66 -9.86 16 21 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 22 H -0.26 -11.27 6.80 99.48 0.68 -10.59 16 23 C -0.27 -12.09 7.10 22.47 0.16 -11.93 16 24 C -0.02 -0.87 9.53 22.25 0.21 -0.66 16 25 C 0.04 0.89 5.06 86.36 0.44 1.32 16 26 C 0.05 0.95 6.99 72.08 0.50 1.45 16 27 O -0.37 -9.42 9.93 -130.02 -1.29 -10.72 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.42 4.06 8.83 -92.70 -0.82 3.24 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.11 2.42 7.10 -2.39 -0.02 2.40 16 34 H 0.15 4.08 5.27 -2.91 -0.02 4.07 16 35 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 36 H 0.30 13.37 8.29 -92.70 -0.77 12.60 16 37 H 0.10 4.50 4.22 -2.91 -0.01 4.49 16 38 H 0.11 4.31 7.96 -2.91 -0.02 4.29 16 39 H 0.09 1.81 8.11 -2.39 -0.02 1.79 16 40 H 0.13 3.12 3.72 -2.52 -0.01 3.11 16 41 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -67.37 342.80 1.24 -66.13 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.18 Total: 22.69 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 5.40 Total: -5.67 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -4.93 Total: -73.00 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -1.09 Total: -52.23 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.68 Total: 42.10 kcal Total: -67.37 1.24 -66.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273094987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.773 kcal (2) G-P(sol) polarization free energy of solvation -67.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds