Wall clock time and date at job start Fri Apr 10 2020 18:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35654 * 117.00437 * 2 1 4 4 C 1.38701 * 120.14855 * 359.97438 * 3 2 1 5 5 C 1.38055 * 120.08747 * 179.97438 * 4 3 2 6 6 C 1.38549 * 120.38950 * 359.97438 * 5 4 3 7 7 C 1.37791 * 120.29640 * 0.02562 * 6 5 4 8 8 C 1.39701 * 119.91169 * 359.97438 * 7 6 5 9 9 C 1.47537 * 120.19740 * 179.97438 * 8 7 6 10 10 O 1.21582 * 120.00275 * 179.97438 * 9 8 7 11 11 N 1.34785 * 119.99497 * 0.02562 * 9 8 7 12 12 C 1.46494 * 119.99743 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47160 * 179.97438 * 12 11 9 14 14 O 1.21298 * 119.99508 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00459 * 179.97438 * 13 12 11 16 16 C 1.37094 * 120.00281 * 179.97438 * 15 13 12 17 17 H 1.08000 * 119.99834 * 224.48541 * 16 15 13 18 18 C 1.38946 * 119.99846 * 44.48598 * 16 15 13 19 19 N 1.31415 * 120.00537 * 17.98678 * 18 16 15 20 20 Si 1.86802 * 119.99794 * 197.98983 * 18 16 15 21 21 H 1.48498 * 109.47462 * 89.99943 * 20 18 16 22 22 H 1.48501 * 109.47417 * 210.00107 * 20 18 16 23 23 H 1.48503 * 109.47264 * 329.99731 * 20 18 16 24 24 C 1.46505 * 119.99482 * 359.97438 * 15 13 12 25 25 C 1.52999 * 117.49374 * 183.27421 * 24 15 13 26 26 C 1.53001 * 117.49162 * 114.61789 * 24 15 13 27 27 H 1.09007 * 109.47079 * 59.99831 * 1 2 3 28 28 H 1.08997 * 109.47489 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47119 * 300.00404 * 1 2 3 30 30 H 1.07999 * 119.96213 * 0.25780 * 4 3 2 31 31 H 1.08003 * 119.81065 * 179.97438 * 5 4 3 32 32 H 1.07992 * 119.85383 * 179.97438 * 6 5 4 33 33 H 1.08007 * 120.04383 * 179.97438 * 7 6 5 34 34 H 0.97002 * 119.99865 * 359.97438 * 11 9 8 35 35 H 1.09005 * 109.46927 * 299.99331 * 12 11 9 36 36 H 1.08993 * 109.47437 * 59.99525 * 12 11 9 37 37 H 0.96993 * 120.00351 * 174.96287 * 19 18 16 38 38 H 1.08995 * 115.55339 * 328.94953 * 24 15 13 39 39 H 1.08994 * 117.50425 * 0.02562 * 25 24 15 40 40 H 1.09001 * 117.49538 * 145.03089 * 25 24 15 41 41 H 1.09000 * 117.49691 * 214.97937 * 26 24 15 42 42 H 1.09002 * 117.50158 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2926 2.3739 -0.0005 5 6 1.9207 3.6033 0.0000 6 6 3.3039 3.6836 0.0016 7 6 4.0668 2.5362 0.0022 8 6 3.4442 1.2856 0.0016 9 6 4.2549 0.0530 0.0016 10 8 3.7094 -1.0336 0.0017 11 7 5.6005 0.1315 0.0027 12 6 6.4056 -1.0924 0.0021 13 6 7.8687 -0.7312 0.0029 14 8 8.2057 0.4340 0.0033 15 7 8.8027 -1.7029 0.0031 16 6 10.1337 -1.3743 0.0032 17 1 10.8180 -1.8927 -0.6521 18 6 10.6023 -0.3743 0.8464 19 7 9.8802 0.0098 1.8751 20 14 12.2587 0.4243 0.5178 21 1 12.0737 1.6018 -0.3679 22 1 12.8612 0.8614 1.8028 23 1 13.1583 -0.5554 -0.1426 24 6 8.3956 -3.1102 0.0031 25 6 9.5009 -4.1653 0.0808 26 6 8.7426 -3.9459 -1.2307 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2140 2.3195 0.0033 31 1 1.3305 4.5078 -0.0008 32 1 3.7862 4.6498 0.0016 33 1 5.1448 2.6036 0.0030 34 1 6.0357 0.9984 0.0031 35 1 6.1754 -1.6791 0.8915 36 1 6.1766 -1.6776 -0.8884 37 1 10.2379 0.6549 2.5049 38 1 7.4556 -3.3277 0.5102 39 1 10.5308 -3.8124 0.1324 40 1 9.2879 -5.0771 0.6387 41 1 8.0310 -4.7134 -1.5350 42 1 9.2734 -3.4485 -2.0425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274857556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:58 Heat of formation + Delta-G solvation = -53.791632 kcal Electronic energy + Delta-G solvation = -26413.409871 eV Core-core repulsion = 22552.898565 eV Total energy + Delta-G solvation = -3860.511306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62435 -40.65822 -39.73921 -38.27114 -37.87182 -35.55545 -34.64672 -33.00769 -32.45432 -31.10392 -29.33501 -28.07091 -26.52856 -24.64376 -23.21321 -22.99545 -22.82530 -21.63020 -21.19273 -19.75145 -18.58217 -17.98071 -17.59144 -17.41398 -16.88975 -16.77219 -16.50787 -16.27018 -16.10266 -15.65128 -15.52023 -15.45446 -15.03187 -14.58721 -14.46241 -14.19924 -13.82858 -13.57556 -13.35604 -13.10349 -12.90789 -12.78860 -12.68907 -12.56272 -12.23932 -12.11318 -12.05176 -12.02842 -11.69318 -11.26664 -10.95138 -10.76179 -10.26341 -10.11975 -10.00826 -9.24851 -9.04010 -8.22218 -6.02561 -0.15953 0.39272 1.38111 1.46070 1.51229 1.85949 2.03776 2.15840 2.34481 2.37861 2.83581 3.03128 3.10064 3.31330 3.66170 3.78664 3.90622 3.99900 4.11295 4.22352 4.26277 4.35474 4.36010 4.37433 4.40323 4.44268 4.52118 4.53202 4.72995 4.83448 4.89042 4.99644 5.14924 5.22532 5.30689 5.32941 5.45328 5.45475 5.49348 5.74587 6.17107 6.39373 6.54863 6.96534 7.07143 7.19090 7.60546 8.21044 8.86285 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.003460 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.132299 B = 8090.210194 C = 9525.505036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.317 6.317 3 C 0.166 3.834 4 C -0.218 4.218 5 C -0.041 4.041 6 C -0.166 4.166 7 C -0.055 4.055 8 C -0.203 4.203 9 C 0.554 3.446 10 O -0.565 6.565 11 N -0.709 5.709 12 C 0.124 3.876 13 C 0.464 3.536 14 O -0.575 6.575 15 N -0.433 5.433 16 C -0.358 4.358 17 H 0.082 0.918 18 C 0.024 3.976 19 N -0.869 5.869 20 Si 0.974 3.026 21 H -0.288 1.288 22 H -0.281 1.281 23 H -0.255 1.255 24 C 0.033 3.967 25 C -0.164 4.164 26 C -0.178 4.178 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.165 0.835 31 H 0.171 0.829 32 H 0.156 0.844 33 H 0.129 0.871 34 H 0.408 0.592 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.261 0.739 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.326 3.477 -3.653 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.229 6.229 3 C 0.118 3.882 4 C -0.236 4.236 5 C -0.059 4.059 6 C -0.184 4.184 7 C -0.074 4.074 8 C -0.206 4.206 9 C 0.344 3.656 10 O -0.445 6.445 11 N -0.363 5.363 12 C -0.004 4.004 13 C 0.253 3.747 14 O -0.457 6.457 15 N -0.153 5.153 16 C -0.485 4.485 17 H 0.100 0.900 18 C -0.183 4.183 19 N -0.504 5.504 20 Si 0.799 3.201 21 H -0.215 1.215 22 H -0.207 1.207 23 H -0.179 1.179 24 C -0.071 4.071 25 C -0.201 4.201 26 C -0.216 4.216 27 H 0.092 0.908 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.183 0.817 31 H 0.188 0.812 32 H 0.174 0.826 33 H 0.147 0.853 34 H 0.247 0.753 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.454 3.222 -3.519 18.094 hybrid contribution 1.153 0.685 0.219 1.359 sum -16.301 3.907 -3.299 17.084 Atomic orbital electron populations 1.23449 0.76498 1.05468 1.02784 1.86338 1.23324 1.26387 1.86837 1.19311 0.90627 0.86002 0.92234 1.21581 1.01606 0.91083 1.09341 1.21622 0.94429 0.98139 0.91726 1.21369 0.94544 0.98561 1.03918 1.21401 1.00537 0.91103 0.94376 1.19352 0.91606 0.93456 1.16218 1.18478 0.81523 0.89569 0.76068 1.90732 1.72184 1.30056 1.51558 1.45701 1.05651 1.10289 1.74666 1.20860 0.88834 0.87699 1.02973 1.20294 0.87214 0.86083 0.81156 1.90453 1.81967 1.20012 1.53250 1.42854 1.04915 1.02643 1.64860 1.19157 0.84113 1.22340 1.22929 0.89991 1.26084 1.01340 0.97398 0.93435 1.69942 1.38834 1.30301 1.11334 0.85251 0.78544 0.78780 0.77499 1.21479 1.20699 1.17898 1.22079 0.99741 0.81785 1.03545 1.23128 0.97355 0.99135 1.00488 1.23339 1.03963 1.02733 0.91615 0.90767 0.87282 0.90907 0.81724 0.81189 0.82608 0.85279 0.75305 0.90392 0.88981 0.92939 0.86310 0.89551 0.86495 0.85995 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -9.39 8.57 -68.77 -0.59 -9.98 16 3 C 0.17 4.68 6.70 22.84 0.15 4.84 16 4 C -0.22 -4.06 9.03 22.34 0.20 -3.85 16 5 C -0.04 -0.64 10.03 22.30 0.22 -0.42 16 6 C -0.17 -3.23 10.02 22.24 0.22 -3.01 16 7 C -0.06 -1.50 9.53 22.52 0.21 -1.29 16 8 C -0.20 -6.61 5.89 -20.01 -0.12 -6.73 16 9 C 0.55 22.10 7.76 86.69 0.67 22.77 16 10 O -0.56 -25.31 15.16 16.94 0.26 -25.06 16 11 N -0.71 -29.04 5.48 -470.01 -2.57 -31.62 16 12 C 0.12 5.35 4.77 85.64 0.41 5.76 16 13 C 0.46 23.94 7.03 87.66 0.62 24.55 16 14 O -0.58 -33.48 13.44 -3.09 -0.04 -33.52 16 15 N -0.43 -21.80 2.83 -613.12 -1.74 -23.54 16 16 C -0.36 -19.50 7.91 84.04 0.66 -18.84 16 17 H 0.08 4.30 7.27 -2.91 -0.02 4.28 16 18 C 0.02 1.35 4.39 84.92 0.37 1.72 16 19 N -0.87 -51.93 11.74 21.66 0.25 -51.68 16 20 Si 0.97 44.84 29.59 68.60 2.03 46.87 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 24 C 0.03 1.33 5.87 44.99 0.26 1.59 16 25 C -0.16 -5.65 9.80 30.62 0.30 -5.35 16 26 C -0.18 -5.77 10.36 30.62 0.32 -5.46 16 27 H 0.07 0.90 7.67 -2.38 -0.02 0.88 16 28 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 0.90 7.66 -2.38 -0.02 0.88 16 30 H 0.17 1.90 6.30 -2.91 -0.02 1.88 16 31 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 32 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.13 3.60 6.40 -2.91 -0.02 3.58 16 34 H 0.41 16.68 5.47 -92.71 -0.51 16.17 16 35 H 0.08 3.35 7.56 -2.38 -0.02 3.34 16 36 H 0.09 3.70 8.11 -2.39 -0.02 3.69 16 37 H 0.26 15.02 8.32 -92.71 -0.77 14.25 16 38 H 0.12 4.34 6.96 -2.39 -0.02 4.32 16 39 H 0.09 3.37 6.73 -2.39 -0.02 3.35 16 40 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 42 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -79.02 354.18 3.78 -75.24 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.55 Total: 35.65 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 5.63 Total: 17.62 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -4.06 Total: -106.83 kcal Atomic # 8 Polarization: -68.18 SS G_CDS: -0.37 Total: -68.56 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -79.02 3.78 -75.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274857556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.447 kcal (2) G-P(sol) polarization free energy of solvation -79.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds