Wall clock time and date at job start Fri Apr 10 2020 18:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46497 * 119.99949 * 2 1 4 4 C 1.50708 * 109.46981 * 269.99492 * 3 2 1 5 5 H 1.07998 * 119.99355 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99848 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00121 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99765 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47314 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47199 * 119.99645 * 8 6 4 11 11 H 1.48506 * 109.47011 * 239.99796 * 8 6 4 12 12 C 1.34780 * 119.99714 * 179.97438 * 2 1 3 13 13 O 1.21719 * 119.99941 * 180.02562 * 12 2 1 14 14 C 1.46258 * 119.99999 * 0.02562 * 12 2 1 15 15 C 1.34970 * 120.00132 * 180.02562 * 14 12 2 16 16 C 1.47008 * 120.00337 * 179.97438 * 15 14 12 17 17 C 1.39967 * 120.11494 * 179.97438 * 16 15 14 18 18 C 1.37664 * 119.88523 * 180.02562 * 17 16 15 19 19 C 1.39020 * 120.11130 * 0.26204 * 18 17 16 20 20 O 1.35738 * 119.88248 * 179.73863 * 19 18 17 21 21 C 1.42903 * 116.99964 * 179.97438 * 20 19 18 22 22 C 1.50697 * 109.47031 * 180.02562 * 21 20 19 23 23 N 1.34778 * 119.99932 * 180.02562 * 22 21 20 24 24 O 1.21276 * 120.00555 * 0.02562 * 22 21 20 25 25 C 1.39020 * 120.22793 * 359.48372 * 19 18 17 26 26 C 1.37658 * 120.11632 * 0.51634 * 25 19 18 27 27 H 1.08993 * 109.47594 * 270.00654 * 1 2 3 28 28 H 1.09012 * 109.46528 * 30.00462 * 1 2 3 29 29 H 1.08998 * 109.47023 * 149.99723 * 1 2 3 30 30 H 1.08997 * 109.47801 * 29.99823 * 3 2 1 31 31 H 1.09004 * 109.46957 * 149.99965 * 3 2 1 32 32 H 0.96993 * 120.00072 * 179.97438 * 7 6 4 33 33 H 1.08003 * 120.00067 * 359.97438 * 14 12 2 34 34 H 1.08003 * 119.99800 * 0.02562 * 15 14 12 35 35 H 1.07999 * 120.05751 * 0.02562 * 17 16 15 36 36 H 1.08002 * 119.94028 * 179.97438 * 18 17 16 37 37 H 1.08998 * 109.47477 * 300.00730 * 21 20 19 38 38 H 1.09004 * 109.46657 * 60.00227 * 21 20 19 39 39 H 0.97001 * 119.99921 * 0.02562 * 23 22 21 40 40 H 0.97000 * 120.00481 * 179.97438 * 23 22 21 41 41 H 1.08007 * 119.94133 * 180.25300 * 25 19 18 42 42 H 1.08002 * 120.06360 * 179.76704 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1271 2.8774 -1.6728 7 7 3.5543 3.6175 -0.6733 8 14 3.4378 3.4168 -3.4340 9 1 2.8600 2.4167 -4.3674 10 1 2.8008 4.7379 -3.6668 11 1 4.9004 3.5244 -3.6679 12 6 2.1389 -1.1673 0.0005 13 8 3.3561 -1.1673 0.0010 14 6 1.4075 -2.4339 0.0005 15 6 2.0823 -3.6028 0.0016 16 6 1.3473 -4.8759 0.0021 17 6 2.0446 -6.0895 0.0027 18 6 1.3515 -7.2789 0.0027 19 6 -0.0386 -7.2760 -0.0034 20 8 -0.7173 -8.4515 -0.0087 21 6 -2.1444 -8.3767 -0.0142 22 6 -2.7204 -9.7692 -0.0190 23 7 -4.0566 -9.9458 -0.0251 24 8 -1.9818 -10.7311 -0.0173 25 6 -0.7361 -6.0734 0.0014 26 6 -0.0525 -4.8785 0.0014 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8901 -0.5140 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5139 32 1 4.0317 4.4430 -0.8505 33 1 0.3275 -2.4338 0.0005 34 1 3.1623 -3.6028 0.0028 35 1 3.1246 -6.0927 0.0031 36 1 1.8887 -8.2158 0.0027 37 1 -2.4839 -7.8464 0.8756 38 1 -2.4767 -7.8425 -0.9044 39 1 -4.6474 -9.1765 -0.0268 40 1 -4.4274 -10.8421 -0.0285 41 1 -1.8161 -6.0766 0.0008 42 1 -0.5952 -3.9447 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298135828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:12 Heat of formation + Delta-G solvation = -61.420781 kcal Electronic energy + Delta-G solvation = -24594.437437 eV Core-core repulsion = 20733.595306 eV Total energy + Delta-G solvation = -3860.842131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.79726 -39.65054 -38.93010 -37.73187 -34.83744 -34.33453 -33.52823 -32.54651 -31.39855 -29.89318 -28.52640 -27.55795 -25.82721 -24.19826 -23.31958 -22.49870 -21.20621 -20.32296 -18.86924 -18.35005 -17.96332 -17.00564 -16.86222 -16.83808 -16.48924 -15.86676 -15.40830 -15.13260 -14.76988 -14.61831 -14.40737 -14.35631 -14.11480 -13.61806 -13.14888 -13.08160 -12.70579 -12.47513 -12.36327 -12.09768 -11.94987 -11.73099 -11.50567 -11.20631 -11.00050 -10.86064 -10.56956 -10.51474 -10.34903 -10.15561 -9.85164 -9.59077 -9.30981 -8.97735 -8.43104 -7.97244 -7.58377 -6.03429 -4.08133 0.59194 1.10372 1.96712 2.11192 2.17757 3.30248 3.30352 3.37851 3.42072 3.57697 3.97447 4.11769 4.12125 4.35096 4.43922 4.45741 4.50518 4.55640 4.76679 5.01667 5.10616 5.22678 5.26763 5.31086 5.51958 5.68643 5.75913 5.90201 5.92950 6.02776 6.10923 6.11554 6.20879 6.40219 6.48762 6.61617 6.67206 6.99449 7.10539 7.46003 7.55671 7.60592 7.93289 8.24332 8.43401 8.91513 9.11179 9.56914 11.04594 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027086 B = 0.001931 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.497267 B =14493.809237 C =14780.604508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.597 5.597 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.532 3.468 13 O -0.545 6.545 14 C -0.193 4.193 15 C -0.045 4.045 16 C -0.094 4.094 17 C -0.059 4.059 18 C -0.147 4.147 19 C 0.127 3.873 20 O -0.290 6.290 21 C 0.038 3.962 22 C 0.520 3.480 23 N -0.851 5.851 24 O -0.518 6.518 25 C -0.210 4.210 26 C -0.066 4.066 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.404 0.596 40 H 0.409 0.591 41 H 0.129 0.871 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.124 -23.489 2.878 29.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.328 5.328 3 C 0.124 3.876 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.321 3.679 13 O -0.425 6.425 14 C -0.213 4.213 15 C -0.065 4.065 16 C -0.094 4.094 17 C -0.077 4.077 18 C -0.165 4.165 19 C 0.082 3.918 20 O -0.202 6.202 21 C -0.041 4.041 22 C 0.303 3.697 23 N -0.418 5.418 24 O -0.392 6.392 25 C -0.229 4.229 26 C -0.084 4.084 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.232 0.768 40 H 0.241 0.759 41 H 0.147 0.853 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.674 -23.968 2.926 29.344 hybrid contribution -0.730 0.703 -0.999 1.423 sum -17.404 -23.266 1.926 29.119 Atomic orbital electron populations 1.21672 0.81523 1.02511 1.00391 1.48064 1.06156 1.07882 1.70719 1.19314 0.92632 0.78046 0.97564 1.21479 1.36385 1.06225 0.92300 0.92386 1.24946 0.95384 0.96407 0.97470 1.69940 1.38432 1.14361 1.30656 0.86434 0.78101 0.78257 0.84575 1.19805 1.20982 1.20855 1.18128 0.87485 0.84095 0.78214 1.90780 1.13570 1.87491 1.50643 1.23279 1.00186 0.93229 1.04639 1.22229 1.00281 0.90020 0.93977 1.19054 0.93014 0.93266 1.04080 1.21231 1.00233 0.90462 0.95767 1.20363 0.90612 0.99322 1.06215 1.19184 0.91910 0.83990 0.96703 1.86106 1.17322 1.28151 1.88666 1.22449 0.81576 0.95776 1.04251 1.20077 0.82844 0.90670 0.76118 1.43659 1.06578 1.12923 1.78610 1.90822 1.58921 1.42168 1.47256 1.21115 1.00023 0.91979 1.09775 1.21227 0.93459 0.97694 0.95981 0.93720 0.90755 0.92403 0.94941 0.93724 0.92775 0.85802 0.84681 0.84472 0.84726 0.88635 0.88620 0.76774 0.75913 0.85335 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.15 59.85 0.61 1.91 16 2 N -0.60 -12.92 2.86 -184.66 -0.53 -13.45 16 3 C 0.24 6.47 5.16 -5.19 -0.03 6.45 16 4 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.53 11.41 7.60 -13.04 -0.10 11.31 16 13 O -0.54 -14.06 15.81 5.17 0.08 -13.98 16 14 C -0.19 -3.00 8.60 -37.52 -0.32 -3.32 16 15 C -0.05 -0.64 9.45 -37.19 -0.35 -0.99 16 16 C -0.09 -1.09 5.87 -105.05 -0.62 -1.71 16 17 C -0.06 -0.61 9.79 -39.14 -0.38 -1.00 16 18 C -0.15 -1.49 9.97 -39.50 -0.39 -1.89 16 19 C 0.13 1.27 6.70 -39.00 -0.26 1.01 16 20 O -0.29 -2.93 9.66 -38.83 -0.38 -3.31 16 21 C 0.04 0.22 5.21 36.00 0.19 0.41 16 22 C 0.52 3.70 8.18 -10.99 -0.09 3.61 16 23 N -0.85 -2.08 8.87 31.22 0.28 -1.80 16 24 O -0.52 -6.52 17.34 -14.35 -0.25 -6.77 16 25 C -0.21 -1.79 9.01 -39.50 -0.36 -2.14 16 26 C -0.07 -0.65 9.40 -39.14 -0.37 -1.02 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.20 8.07 -51.92 -0.42 0.78 16 29 H 0.06 0.73 6.09 -51.93 -0.32 0.41 16 30 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.12 1.51 4.21 -52.48 -0.22 1.29 16 34 H 0.14 2.04 7.52 -52.48 -0.39 1.65 16 35 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.10 0.30 7.64 -51.93 -0.40 -0.09 16 38 H 0.10 0.31 7.66 -51.93 -0.40 -0.08 16 39 H 0.40 -0.39 8.83 -40.82 -0.36 -0.75 16 40 H 0.41 0.75 8.93 -40.82 -0.36 0.39 16 41 H 0.13 0.67 6.27 -52.48 -0.33 0.34 16 42 H 0.13 1.10 6.16 -52.49 -0.32 0.78 16 LS Contribution 365.87 15.07 5.51 5.51 Total: -1.00 -39.31 365.87 -7.60 -46.91 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -5.14 Total: -2.93 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.89 Total: -1.15 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.49 Total: -41.28 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.54 Total: -24.06 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.31 -7.60 -46.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298135828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.508 kcal (2) G-P(sol) polarization free energy of solvation -39.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds