Wall clock time and date at job start Fri Apr 10 2020 18:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46497 * 119.99949 * 2 1 4 4 C 1.50708 * 109.46981 * 269.99492 * 3 2 1 5 5 H 1.07998 * 119.99355 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99848 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00121 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99765 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47314 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47199 * 119.99645 * 8 6 4 11 11 H 1.48506 * 109.47011 * 239.99796 * 8 6 4 12 12 C 1.34780 * 119.99714 * 179.97438 * 2 1 3 13 13 O 1.21719 * 119.99941 * 180.02562 * 12 2 1 14 14 C 1.46258 * 119.99999 * 0.02562 * 12 2 1 15 15 C 1.34970 * 120.00132 * 180.02562 * 14 12 2 16 16 C 1.47008 * 120.00337 * 179.97438 * 15 14 12 17 17 C 1.39967 * 120.11494 * 179.97438 * 16 15 14 18 18 C 1.37664 * 119.88523 * 180.02562 * 17 16 15 19 19 C 1.39020 * 120.11130 * 0.26204 * 18 17 16 20 20 O 1.35738 * 119.88248 * 179.73863 * 19 18 17 21 21 C 1.42903 * 116.99964 * 179.97438 * 20 19 18 22 22 C 1.50697 * 109.47031 * 180.02562 * 21 20 19 23 23 N 1.34778 * 119.99932 * 180.02562 * 22 21 20 24 24 O 1.21276 * 120.00555 * 0.02562 * 22 21 20 25 25 C 1.39020 * 120.22793 * 359.48372 * 19 18 17 26 26 C 1.37658 * 120.11632 * 0.51634 * 25 19 18 27 27 H 1.08993 * 109.47594 * 270.00654 * 1 2 3 28 28 H 1.09012 * 109.46528 * 30.00462 * 1 2 3 29 29 H 1.08998 * 109.47023 * 149.99723 * 1 2 3 30 30 H 1.08997 * 109.47801 * 29.99823 * 3 2 1 31 31 H 1.09004 * 109.46957 * 149.99965 * 3 2 1 32 32 H 0.96993 * 120.00072 * 179.97438 * 7 6 4 33 33 H 1.08003 * 120.00067 * 359.97438 * 14 12 2 34 34 H 1.08003 * 119.99800 * 0.02562 * 15 14 12 35 35 H 1.07999 * 120.05751 * 0.02562 * 17 16 15 36 36 H 1.08002 * 119.94028 * 179.97438 * 18 17 16 37 37 H 1.08998 * 109.47477 * 300.00730 * 21 20 19 38 38 H 1.09004 * 109.46657 * 60.00227 * 21 20 19 39 39 H 0.97001 * 119.99921 * 0.02562 * 23 22 21 40 40 H 0.97000 * 120.00481 * 179.97438 * 23 22 21 41 41 H 1.08007 * 119.94133 * 180.25300 * 25 19 18 42 42 H 1.08002 * 120.06360 * 179.76704 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1271 2.8774 -1.6728 7 7 3.5543 3.6175 -0.6733 8 14 3.4378 3.4168 -3.4340 9 1 2.8600 2.4167 -4.3674 10 1 2.8008 4.7379 -3.6668 11 1 4.9004 3.5244 -3.6679 12 6 2.1389 -1.1673 0.0005 13 8 3.3561 -1.1673 0.0010 14 6 1.4075 -2.4339 0.0005 15 6 2.0823 -3.6028 0.0016 16 6 1.3473 -4.8759 0.0021 17 6 2.0446 -6.0895 0.0027 18 6 1.3515 -7.2789 0.0027 19 6 -0.0386 -7.2760 -0.0034 20 8 -0.7173 -8.4515 -0.0087 21 6 -2.1444 -8.3767 -0.0142 22 6 -2.7204 -9.7692 -0.0190 23 7 -4.0566 -9.9458 -0.0251 24 8 -1.9818 -10.7311 -0.0173 25 6 -0.7361 -6.0734 0.0014 26 6 -0.0525 -4.8785 0.0014 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8901 -0.5140 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5139 32 1 4.0317 4.4430 -0.8505 33 1 0.3275 -2.4338 0.0005 34 1 3.1623 -3.6028 0.0028 35 1 3.1246 -6.0927 0.0031 36 1 1.8887 -8.2158 0.0027 37 1 -2.4839 -7.8464 0.8756 38 1 -2.4767 -7.8425 -0.9044 39 1 -4.6474 -9.1765 -0.0268 40 1 -4.4274 -10.8421 -0.0285 41 1 -1.8161 -6.0766 0.0008 42 1 -0.5952 -3.9447 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298135828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:11 Heat of formation + Delta-G solvation = -90.792541 kcal Electronic energy + Delta-G solvation = -24595.711092 eV Core-core repulsion = 20733.595306 eV Total energy + Delta-G solvation = -3862.115786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44120 -40.63793 -40.17089 -38.51512 -36.60101 -34.85672 -34.77869 -34.41849 -32.10984 -30.83149 -29.79108 -28.76439 -27.31084 -25.71506 -24.25986 -23.66206 -21.84792 -21.42737 -19.57335 -19.42782 -18.73085 -18.65896 -18.15014 -17.43029 -17.36366 -17.15610 -16.51420 -16.29162 -16.11867 -15.87727 -15.39776 -15.39135 -14.97692 -14.58940 -14.32073 -14.20673 -13.82248 -13.67578 -13.66588 -13.46347 -13.41049 -12.96398 -12.85082 -12.60402 -12.45551 -12.35366 -12.20865 -11.77899 -11.68385 -11.11147 -10.83859 -10.73096 -10.68491 -10.65027 -10.02836 -9.42766 -8.79274 -8.21994 -6.37511 -0.37178 0.39683 1.05824 1.36233 1.39080 1.49018 1.51059 1.70029 2.30271 2.47596 2.50505 2.85329 2.92027 3.06705 3.65234 3.69580 3.88526 3.90935 4.10810 4.14484 4.16439 4.21299 4.31253 4.43294 4.50058 4.65235 4.75323 4.94629 4.97530 5.04553 5.10536 5.19228 5.23430 5.28430 5.50291 5.57926 5.66994 5.70019 5.83775 5.86561 6.06192 6.27266 6.44812 6.70521 6.81054 7.26582 7.28076 7.49211 8.84794 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027086 B = 0.001931 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.497267 B =14493.809237 C =14780.604508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.606 5.606 3 C 0.257 3.743 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.928 5.928 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.267 1.267 11 H -0.282 1.282 12 C 0.521 3.479 13 O -0.609 6.609 14 C -0.211 4.211 15 C -0.017 4.017 16 C -0.121 4.121 17 C -0.059 4.059 18 C -0.165 4.165 19 C 0.131 3.869 20 O -0.316 6.316 21 C 0.030 3.970 22 C 0.516 3.484 23 N -0.826 5.826 24 O -0.586 6.586 25 C -0.203 4.203 26 C -0.058 4.058 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.026 0.974 31 H -0.004 1.004 32 H 0.267 0.733 33 H 0.166 0.834 34 H 0.114 0.886 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.424 0.576 40 H 0.414 0.586 41 H 0.170 0.830 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.804 -24.446 1.884 32.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.336 5.336 3 C 0.135 3.865 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.192 1.192 11 H -0.208 1.208 12 C 0.313 3.687 13 O -0.494 6.494 14 C -0.231 4.231 15 C -0.037 4.037 16 C -0.121 4.121 17 C -0.077 4.077 18 C -0.183 4.183 19 C 0.086 3.914 20 O -0.229 6.229 21 C -0.048 4.048 22 C 0.300 3.700 23 N -0.393 5.393 24 O -0.465 6.465 25 C -0.222 4.222 26 C -0.076 4.076 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.044 0.956 31 H 0.015 0.985 32 H 0.076 0.924 33 H 0.183 0.817 34 H 0.132 0.868 35 H 0.161 0.839 36 H 0.155 0.845 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.256 0.744 40 H 0.246 0.754 41 H 0.187 0.813 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.479 -24.911 1.939 32.307 hybrid contribution 0.311 0.800 -0.629 1.064 sum -20.168 -24.111 1.310 31.461 Atomic orbital electron populations 1.22006 0.77647 1.04139 1.02737 1.48083 1.08602 1.06276 1.70644 1.18785 0.91148 0.80409 0.96130 1.21735 1.36833 1.06530 0.92986 0.92882 1.25894 0.94889 0.96423 1.02144 1.70057 1.38912 1.14844 1.33011 0.85333 0.77864 0.78431 0.78953 1.19113 1.19206 1.20806 1.19095 0.87143 0.85768 0.76645 1.90733 1.16483 1.88477 1.53666 1.22996 1.01552 0.90074 1.08450 1.22294 0.99603 0.91186 0.90617 1.18957 0.94122 0.91887 1.07158 1.21336 1.00776 0.90427 0.95156 1.20499 0.91506 0.99281 1.07057 1.19367 0.91901 0.84716 0.95449 1.86086 1.19893 1.28513 1.88443 1.22840 0.79333 0.95331 1.07266 1.20482 0.83689 0.90649 0.75184 1.43501 1.05386 1.14211 1.76152 1.90801 1.60701 1.44146 1.50872 1.21470 1.01990 0.90505 1.08192 1.21508 0.92500 0.99243 0.94355 0.90940 0.91454 0.88443 0.95579 0.98545 0.92375 0.81655 0.86815 0.83945 0.84505 0.85356 0.85426 0.74408 0.75395 0.81256 0.82832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 10.15 127.77 1.30 3.54 16 2 N -0.61 -26.59 2.86 -856.34 -2.45 -29.04 16 3 C 0.26 14.28 5.16 85.64 0.44 14.72 16 4 C -0.54 -32.00 9.39 25.60 0.24 -31.76 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.31 5.46 84.66 0.46 0.77 16 7 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 8 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 C 0.52 22.90 7.60 86.33 0.66 23.56 16 13 O -0.61 -33.38 15.81 -4.41 -0.07 -33.45 16 14 C -0.21 -6.28 8.60 23.60 0.20 -6.08 16 15 C -0.02 -0.47 9.45 23.82 0.23 -0.24 16 16 C -0.12 -2.58 5.87 -20.14 -0.12 -2.69 16 17 C -0.06 -1.17 9.79 22.55 0.22 -0.95 16 18 C -0.16 -3.15 9.97 22.32 0.22 -2.93 16 19 C 0.13 2.24 6.70 22.64 0.15 2.39 16 20 O -0.32 -5.63 9.66 -71.58 -0.69 -6.32 16 21 C 0.03 0.22 5.21 71.24 0.37 0.59 16 22 C 0.52 6.20 8.18 87.66 0.72 6.91 16 23 N -0.83 -1.57 8.87 -173.54 -1.54 -3.11 16 24 O -0.59 -14.59 17.34 16.02 0.28 -14.32 16 25 C -0.20 -2.50 9.01 22.32 0.20 -2.29 16 26 C -0.06 -0.91 9.40 22.55 0.21 -0.70 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.07 2.07 8.07 -2.38 -0.02 2.05 16 29 H 0.10 2.07 6.09 -2.39 -0.01 2.05 16 30 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 31 H 0.00 -0.23 7.42 -2.38 -0.02 -0.25 16 32 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.17 3.36 4.21 -2.91 -0.01 3.35 16 34 H 0.11 3.61 7.52 -2.91 -0.02 3.59 16 35 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 36 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.13 0.13 7.64 -2.39 -0.02 0.11 16 38 H 0.13 0.15 7.66 -2.38 -0.02 0.13 16 39 H 0.42 -2.56 8.83 -92.71 -0.82 -3.37 16 40 H 0.41 0.56 8.93 -92.71 -0.83 -0.26 16 41 H 0.17 0.62 6.27 -2.91 -0.02 0.60 16 42 H 0.15 1.69 6.16 -2.91 -0.02 1.67 16 Total: -1.00 -92.91 365.87 2.78 -90.13 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -0.56 Total: 0.39 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.50 Total: 4.84 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -3.70 Total: -88.82 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -0.48 Total: -54.08 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -92.91 2.78 -90.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298135828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.667 kcal (2) G-P(sol) polarization free energy of solvation -92.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds