Wall clock time and date at job start Fri Apr 10 2020 18:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34770 * 120.00098 * 2 1 4 4 O 1.21284 * 120.00158 * 359.97438 * 3 2 1 5 5 C 1.50709 * 120.00070 * 179.97438 * 3 2 1 6 6 N 1.46495 * 109.47069 * 179.97438 * 5 3 2 7 7 C 1.46501 * 120.00043 * 269.99932 * 6 5 3 8 8 C 1.34775 * 120.00065 * 90.00090 * 6 5 3 9 9 O 1.21726 * 120.00073 * 359.97438 * 8 6 5 10 10 C 1.46258 * 120.00322 * 179.97438 * 8 6 5 11 11 C 1.35015 * 120.00185 * 179.97438 * 10 8 6 12 12 C 1.46966 * 119.99859 * 179.72327 * 11 10 8 13 13 C 1.40020 * 120.10099 * 359.72646 * 12 11 10 14 14 C 1.37601 * 119.89632 * 179.78802 * 13 12 11 15 15 C 1.39173 * 120.10087 * 0.48795 * 14 13 12 16 16 O 1.35568 * 119.90002 * 179.76457 * 15 14 13 17 17 C 1.34779 * 117.00070 * 174.42258 * 16 15 14 18 18 H 1.07996 * 120.00296 * 5.05680 * 17 16 15 19 19 C 1.38728 * 119.99880 * 185.05920 * 17 16 15 20 20 N 1.31504 * 119.99788 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99923 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47005 * 59.99702 * 21 19 17 23 23 H 1.48497 * 109.47002 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47212 * 299.99834 * 21 19 17 25 25 C 1.39182 * 120.20443 * 359.74007 * 15 14 13 26 26 C 1.37597 * 120.10073 * 0.02562 * 25 15 14 27 27 H 1.09005 * 109.47032 * 300.00034 * 1 2 3 28 28 H 1.08994 * 109.47349 * 60.00469 * 1 2 3 29 29 H 1.08999 * 109.46923 * 180.02562 * 1 2 3 30 30 H 0.97001 * 120.00093 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47137 * 59.99435 * 5 3 2 32 32 H 1.09001 * 109.47088 * 299.99796 * 5 3 2 33 33 H 1.09003 * 109.47248 * 270.00184 * 7 6 5 34 34 H 1.09000 * 109.47003 * 30.00340 * 7 6 5 35 35 H 1.09001 * 109.47262 * 149.99877 * 7 6 5 36 36 H 1.08007 * 119.99439 * 359.72456 * 10 8 6 37 37 H 1.07994 * 120.00134 * 359.72623 * 11 10 8 38 38 H 1.08001 * 120.05482 * 359.97438 * 13 12 11 39 39 H 1.08000 * 119.94685 * 180.22931 * 14 13 12 40 40 H 0.97004 * 119.99826 * 180.02562 * 20 19 17 41 41 H 1.07995 * 119.94818 * 179.97438 * 25 15 14 42 42 H 1.07996 * 120.05582 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 7 4.1343 2.5483 -0.0002 7 6 4.3789 3.2381 -1.2693 8 6 4.3584 3.1844 1.1667 9 8 4.1547 2.6115 2.2212 10 6 4.8465 4.5632 1.1660 11 6 5.0706 5.2006 2.3350 12 6 5.5668 6.5839 2.3342 13 6 5.8133 7.2409 1.1225 14 6 6.2737 8.5376 1.1267 15 6 6.5040 9.1926 2.3329 16 8 6.9621 10.4686 2.3322 17 6 7.0550 11.0860 3.5267 18 1 6.8487 10.5390 4.4348 19 6 7.4155 12.4241 3.5897 20 7 7.6671 13.0900 2.4839 21 14 7.5434 13.2800 5.2451 22 1 8.5626 12.5942 6.0795 23 1 7.9426 14.6957 5.0409 24 1 6.2274 13.2304 5.9311 25 6 6.2649 8.5420 3.5398 26 6 5.7999 7.2470 3.5453 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.9500 -0.8400 0.0004 31 1 4.0096 0.6530 -0.8891 32 1 4.0089 0.6535 0.8909 33 1 5.4085 3.0666 -1.5834 34 1 3.6984 2.8535 -2.0289 35 1 4.2119 4.3074 -1.1397 36 1 5.0315 5.0700 0.2304 37 1 4.8853 4.6939 3.2705 38 1 5.6395 6.7318 0.1860 39 1 6.4606 9.0464 0.1926 40 1 7.9195 14.0256 2.5280 41 1 6.4455 9.0541 4.4733 42 1 5.6151 6.7427 4.4823 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299296965.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:17 Heat of formation + Delta-G solvation = -45.839798 kcal Electronic energy + Delta-G solvation = -24849.877149 eV Core-core repulsion = 20989.710660 eV Total energy + Delta-G solvation = -3860.166488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38548 -39.25032 -38.93870 -36.87435 -35.50602 -34.79758 -33.22823 -32.29591 -30.41450 -30.02077 -28.10862 -26.98191 -26.01351 -25.45954 -23.00631 -22.08973 -21.07409 -20.22300 -18.74992 -18.02280 -17.77650 -17.36518 -17.01129 -16.58208 -15.56466 -15.47330 -15.08467 -14.80510 -14.73272 -14.37457 -13.86107 -13.79338 -13.64741 -13.40936 -13.31586 -13.03215 -13.01479 -12.67198 -12.61980 -12.49533 -12.12132 -11.84403 -11.73795 -11.56001 -11.09009 -11.04866 -10.67858 -10.52485 -10.35370 -9.76763 -9.56428 -9.47445 -9.46225 -8.87914 -8.75529 -8.35410 -7.08510 -6.62934 -4.17815 1.09637 2.16293 2.38604 2.51022 2.70259 3.05541 3.07273 3.09567 3.16387 3.62729 3.84236 4.48214 4.54106 4.59848 4.87939 4.91943 4.94265 4.96753 5.07045 5.13014 5.18720 5.27304 5.37701 5.45780 5.53181 5.58146 5.67569 5.72082 6.03486 6.04029 6.14970 6.19855 6.49326 6.51956 6.64037 6.82109 6.93626 7.12525 7.15379 7.25729 7.28468 7.37492 7.66599 7.82344 7.94689 8.28694 8.81752 9.48962 10.53639 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.034211 B = 0.001955 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.245098 B =14315.341066 C =14557.771921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.739 5.739 3 C 0.492 3.508 4 O -0.523 6.523 5 C 0.100 3.900 6 N -0.605 5.605 7 C 0.084 3.916 8 C 0.564 3.436 9 O -0.557 6.557 10 C -0.280 4.280 11 C 0.039 3.961 12 C -0.197 4.197 13 C -0.042 4.042 14 C -0.199 4.199 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.393 4.393 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.268 1.268 25 C -0.242 4.242 26 C -0.035 4.035 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.401 0.599 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.274 0.726 41 H 0.131 0.869 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 -23.550 -6.830 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.393 5.393 3 C 0.277 3.723 4 O -0.398 6.398 5 C -0.027 4.027 6 N -0.337 5.337 7 C -0.059 4.059 8 C 0.359 3.641 9 O -0.437 6.437 10 C -0.301 4.301 11 C 0.019 3.981 12 C -0.199 4.199 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.063 6.063 17 C -0.469 4.469 18 H 0.114 0.886 19 C -0.165 4.165 20 N -0.485 5.485 21 Si 0.769 3.231 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.193 1.193 25 C -0.261 4.261 26 C -0.053 4.053 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.235 0.765 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.149 0.851 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.608 -22.603 -6.553 24.733 hybrid contribution 0.132 -0.035 0.672 0.685 sum -7.476 -22.637 -5.882 24.555 Atomic orbital electron populations 1.21511 0.79641 1.02063 1.02376 1.45796 1.07793 1.08692 1.76980 1.21452 0.91113 0.83843 0.75886 1.90738 1.70111 1.31250 1.47690 1.21193 0.90414 0.85753 1.05389 1.47236 1.66456 1.12840 1.07183 1.21824 1.00722 0.98771 0.84580 1.18424 0.76177 0.87058 0.82454 1.90753 1.53729 1.68289 1.30926 1.22470 1.13622 0.94401 0.99611 1.22295 0.86336 0.91752 0.97711 1.18459 1.13452 0.94290 0.93650 1.20873 0.95380 0.93205 0.96609 1.20147 1.09888 0.95568 0.96249 1.19611 0.90083 0.85845 0.93415 1.83901 1.68723 1.20228 1.33496 1.21425 1.48598 0.93746 0.83126 0.88603 1.25391 0.96030 0.95391 0.99640 1.70004 1.40901 1.10272 1.27335 0.85717 0.79332 0.78382 0.79716 1.19273 1.20097 1.19252 1.21097 1.10385 0.96175 0.98475 1.20988 0.94308 0.93639 0.96390 0.92263 0.92317 0.90706 0.76545 0.87649 0.86883 0.92321 0.91523 0.90129 0.85525 0.85997 0.86454 0.86112 0.91570 0.85127 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.85 0.64 1.22 16 2 N -0.74 -5.24 5.71 -67.08 -0.38 -5.62 16 3 C 0.49 5.41 7.90 -10.98 -0.09 5.32 16 4 O -0.52 -8.35 16.43 5.55 0.09 -8.26 16 5 C 0.10 0.90 5.89 -5.19 -0.03 0.86 16 6 N -0.60 -7.14 2.36 -184.67 -0.44 -7.58 16 7 C 0.08 0.73 10.15 59.85 0.61 1.34 16 8 C 0.56 8.70 7.60 -13.04 -0.10 8.61 16 9 O -0.56 -10.22 15.81 5.17 0.08 -10.13 16 10 C -0.28 -4.17 8.60 -37.51 -0.32 -4.49 16 11 C 0.04 0.63 9.45 -37.19 -0.35 0.27 16 12 C -0.20 -3.48 5.87 -105.02 -0.62 -4.10 16 13 C -0.04 -0.74 9.40 -39.15 -0.37 -1.11 16 14 C -0.20 -4.05 9.97 -39.47 -0.39 -4.44 16 15 C 0.17 3.89 6.66 -38.88 -0.26 3.63 16 16 O -0.16 -4.45 9.74 0.75 0.01 -4.44 16 17 C -0.39 -10.55 9.48 30.91 0.29 -10.25 16 18 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 20 N -0.85 -24.01 13.67 55.48 0.76 -23.25 16 21 Si 0.94 19.70 29.55 -169.99 -5.02 14.67 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 C -0.24 -5.09 9.14 -39.47 -0.36 -5.46 16 26 C -0.03 -0.64 9.78 -39.14 -0.38 -1.02 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.40 1.37 8.83 -40.82 -0.36 1.01 16 31 H 0.11 0.51 8.07 -51.93 -0.42 0.09 16 32 H 0.11 1.01 7.42 -51.93 -0.39 0.63 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 35 H 0.08 0.75 6.10 -51.93 -0.32 0.43 16 36 H 0.13 1.63 4.22 -52.48 -0.22 1.41 16 37 H 0.12 1.95 7.52 -52.49 -0.39 1.56 16 38 H 0.12 1.68 6.16 -52.49 -0.32 1.36 16 39 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.13 2.71 5.62 -52.49 -0.29 2.42 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 364.87 15.07 5.50 5.50 Total: -1.00 -35.76 364.87 -6.31 -42.07 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.08 Total: 5.66 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.83 Total: -8.61 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: -0.06 Total: -36.45 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.18 Total: -22.84 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.76 -6.31 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299296965.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.771 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds