Wall clock time and date at job start Fri Apr 10 2020 18:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34781 * 119.99814 * 2 1 4 4 O 1.21284 * 119.99878 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00309 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47379 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47276 * 180.02562 * 6 5 3 8 8 C 1.34780 * 120.00062 * 179.73016 * 7 6 5 9 9 O 1.21718 * 119.99957 * 359.97438 * 8 7 6 10 10 C 1.46256 * 119.99800 * 179.97438 * 8 7 6 11 11 C 1.35022 * 119.99894 * 179.97438 * 10 8 7 12 12 C 1.46957 * 120.00300 * 180.02562 * 11 10 8 13 13 C 1.40029 * 120.09915 * 359.72225 * 12 11 10 14 14 C 1.37601 * 119.89798 * 179.69970 * 13 12 11 15 15 C 1.39180 * 120.09887 * 0.60088 * 14 13 12 16 16 O 1.35565 * 119.89376 * 179.69676 * 15 14 13 17 17 C 1.34792 * 116.99720 * 174.42235 * 16 15 14 18 18 H 1.07998 * 119.99415 * 5.05109 * 17 16 15 19 19 C 1.38711 * 120.00019 * 185.05884 * 17 16 15 20 20 N 1.31506 * 120.00201 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00134 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47190 * 90.00207 * 21 19 17 23 23 H 1.48497 * 109.46872 * 210.00189 * 21 19 17 24 24 H 1.48501 * 109.47001 * 330.00012 * 21 19 17 25 25 C 1.39171 * 120.20408 * 359.67315 * 15 14 13 26 26 C 1.37600 * 120.10110 * 0.02662 * 25 15 14 27 27 H 1.09007 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47398 * 300.00301 * 1 2 3 29 29 H 1.08996 * 109.47154 * 60.00808 * 1 2 3 30 30 H 0.97000 * 120.00326 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47049 * 59.99637 * 5 3 2 32 32 H 1.09000 * 109.46912 * 299.99909 * 5 3 2 33 33 H 1.08999 * 109.46934 * 60.00047 * 6 5 3 34 34 H 1.09000 * 109.47417 * 300.00080 * 6 5 3 35 35 H 0.97000 * 119.99935 * 359.97438 * 7 6 5 36 36 H 1.08004 * 120.00191 * 359.97438 * 10 8 7 37 37 H 1.08004 * 119.99907 * 359.97438 * 11 10 8 38 38 H 1.08004 * 120.05337 * 359.97438 * 13 12 11 39 39 H 1.07999 * 119.94808 * 180.27028 * 14 13 12 40 40 H 0.96998 * 120.00257 * 179.97438 * 20 19 17 41 41 H 1.08001 * 119.94985 * 180.02562 * 25 15 14 42 42 H 1.07997 * 120.05103 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1674 0.0006 6 6 4.1557 2.6099 -0.0002 7 7 5.6207 2.6100 -0.0002 8 6 6.2945 3.7772 -0.0064 9 8 5.6859 4.8313 -0.0123 10 6 7.7571 3.7772 -0.0058 11 6 8.4322 4.9466 -0.0125 12 6 9.9017 4.9467 -0.0126 13 6 10.6041 3.7354 0.0002 14 6 11.9801 3.7403 -0.0062 15 6 12.6737 4.9469 -0.0126 16 8 14.0294 4.9468 -0.0126 17 6 14.6413 6.1415 -0.1357 18 1 14.0562 7.0492 -0.1464 19 6 16.0223 6.2051 -0.2488 20 7 16.6193 7.3706 -0.3694 21 14 17.0343 4.6350 -0.2297 22 1 17.1925 4.1312 -1.6176 23 1 18.3721 4.9154 0.3506 24 1 16.3427 3.6103 0.5931 25 6 11.9799 6.1533 -0.0195 26 6 10.6040 6.1581 -0.0194 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.9500 -0.8400 0.0004 31 1 4.0095 0.6533 -0.8891 32 1 4.0088 0.6538 0.8908 33 1 3.7920 3.1242 0.8893 34 1 3.7927 3.1231 -0.8906 35 1 6.1057 1.7699 0.0006 36 1 8.2972 2.8419 -0.0001 37 1 7.8921 5.8819 -0.0186 38 1 10.0666 2.7986 0.0105 39 1 12.5226 2.8064 -0.0008 40 1 17.5851 7.4151 -0.4480 41 1 12.5224 7.0872 -0.0249 42 1 10.0664 7.0947 -0.0252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299478376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:19 Heat of formation + Delta-G solvation = -63.582183 kcal Electronic energy + Delta-G solvation = -23925.582050 eV Core-core repulsion = 20064.646194 eV Total energy + Delta-G solvation = -3860.935856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26205 -39.54019 -39.22154 -37.07443 -35.43758 -35.01384 -33.24440 -32.47899 -31.45694 -30.52802 -28.56432 -27.34279 -25.67790 -24.25555 -22.59709 -22.24355 -21.03729 -20.73902 -19.36392 -18.13542 -17.74777 -17.44456 -17.01271 -16.45884 -16.33390 -15.71087 -15.15183 -14.97637 -14.96392 -14.19042 -14.08756 -14.02652 -14.01137 -13.85788 -13.41645 -13.06877 -12.84514 -12.82602 -12.62751 -12.40621 -12.26073 -11.95850 -11.80979 -11.79406 -11.19466 -11.02518 -10.76769 -10.43730 -10.27929 -9.83045 -9.67580 -9.65574 -9.54880 -9.17997 -8.91382 -8.47002 -7.24235 -6.60343 -4.24255 0.99506 2.03377 2.14995 2.48257 2.56177 3.11504 3.15345 3.28429 3.29203 3.53689 4.08560 4.19321 4.43006 4.44633 4.57384 4.63057 4.73943 4.92934 4.93968 4.98907 4.99926 5.17628 5.29719 5.43069 5.51446 5.53663 5.60026 5.73213 5.85211 5.94128 6.02348 6.27000 6.31170 6.43640 6.52826 6.67559 6.89988 6.92869 7.08977 7.16397 7.41738 7.48796 7.62895 7.70697 7.84128 8.30894 8.72959 9.33088 10.45948 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.042875 B = 0.001614 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.911573 B =17348.170763 C =17969.532525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.738 5.738 3 C 0.515 3.485 4 O -0.531 6.531 5 C -0.153 4.153 6 C 0.136 3.864 7 N -0.737 5.737 8 C 0.555 3.445 9 O -0.553 6.553 10 C -0.278 4.278 11 C 0.035 3.965 12 C -0.189 4.189 13 C -0.046 4.046 14 C -0.200 4.200 15 C 0.173 3.827 16 O -0.203 6.203 17 C -0.392 4.392 18 H 0.111 0.889 19 C 0.067 3.933 20 N -0.867 5.867 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.258 1.258 25 C -0.230 4.230 26 C -0.037 4.037 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.403 0.597 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.399 0.601 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.283 0.717 41 H 0.137 0.863 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.324 -17.906 0.672 29.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.390 5.390 3 C 0.301 3.699 4 O -0.407 6.407 5 C -0.194 4.194 6 C 0.011 3.989 7 N -0.389 5.389 8 C 0.346 3.654 9 O -0.432 6.432 10 C -0.299 4.299 11 C 0.016 3.984 12 C -0.190 4.190 13 C -0.064 4.064 14 C -0.219 4.219 15 C 0.119 3.881 16 O -0.105 6.105 17 C -0.467 4.467 18 H 0.128 0.872 19 C -0.139 4.139 20 N -0.503 5.503 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.182 1.182 25 C -0.249 4.249 26 C -0.055 4.055 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.236 0.764 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.233 0.767 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.093 0.907 41 H 0.155 0.845 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -23.810 -16.418 0.667 28.930 hybrid contribution 0.974 -1.394 -0.024 1.700 sum -22.837 -17.811 0.643 28.968 Atomic orbital electron populations 1.21555 0.79412 1.02302 1.02538 1.45808 1.07964 1.08719 1.76549 1.20484 0.89887 0.83710 0.75814 1.90774 1.70424 1.31162 1.48342 1.21819 0.92546 0.99735 1.05269 1.20932 0.79724 0.94260 1.03946 1.45815 1.06640 1.08983 1.77468 1.18400 0.88426 0.83076 0.75469 1.90807 1.70674 1.31202 1.50563 1.22445 0.91841 0.99497 1.16082 1.22315 0.92443 0.97940 0.85739 1.18532 0.91559 0.93645 1.15305 1.20881 0.92872 0.96719 0.95906 1.20142 0.93515 0.96020 1.12198 1.19365 0.83416 0.93528 0.91830 1.83504 1.14903 1.34314 1.77818 1.20881 0.91468 0.82861 1.51495 0.87189 1.24532 0.95834 0.98369 0.95148 1.69614 1.11268 1.23932 1.45447 0.86160 0.78885 0.82404 0.79389 1.19647 1.20516 1.18218 1.21224 0.94187 0.98776 1.10671 1.21052 0.93585 0.96563 0.94303 0.90576 0.92113 0.92105 0.76354 0.88008 0.88001 0.90738 0.90739 0.76706 0.85823 0.85728 0.86239 0.86135 0.90656 0.84497 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 10.70 59.85 0.64 1.00 16 2 N -0.74 -3.30 5.71 -67.08 -0.38 -3.68 16 3 C 0.52 3.97 7.83 -10.98 -0.09 3.88 16 4 O -0.53 -6.70 15.98 5.55 0.09 -6.61 16 5 C -0.15 -0.79 5.81 -27.89 -0.16 -0.95 16 6 C 0.14 1.29 4.96 -4.05 -0.02 1.27 16 7 N -0.74 -6.97 5.55 -61.76 -0.34 -7.31 16 8 C 0.55 7.59 7.74 -13.04 -0.10 7.48 16 9 O -0.55 -9.88 16.23 5.17 0.08 -9.80 16 10 C -0.28 -3.56 9.41 -37.50 -0.35 -3.91 16 11 C 0.04 0.52 9.45 -37.20 -0.35 0.17 16 12 C -0.19 -3.08 5.87 -105.03 -0.62 -3.70 16 13 C -0.05 -0.72 9.40 -39.14 -0.37 -1.09 16 14 C -0.20 -3.65 9.97 -39.46 -0.39 -4.04 16 15 C 0.17 3.76 6.66 -38.89 -0.26 3.50 16 16 O -0.20 -5.04 8.57 0.73 0.01 -5.03 16 17 C -0.39 -10.49 9.94 30.91 0.31 -10.18 16 18 H 0.11 3.00 5.41 -52.49 -0.28 2.72 16 19 C 0.07 1.77 5.49 -17.52 -0.10 1.68 16 20 N -0.87 -23.90 13.96 55.48 0.77 -23.12 16 21 Si 0.91 20.51 28.62 -169.99 -4.86 15.64 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 25 C -0.23 -4.68 9.14 -39.47 -0.36 -5.04 16 26 C -0.04 -0.64 9.78 -39.15 -0.38 -1.02 16 27 H 0.08 0.10 8.14 -51.92 -0.42 -0.32 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.40 0.46 8.83 -40.82 -0.36 0.10 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.40 2.37 8.45 -40.82 -0.34 2.02 16 36 H 0.12 1.28 6.07 -52.48 -0.32 0.96 16 37 H 0.12 1.85 7.52 -52.48 -0.39 1.46 16 38 H 0.12 1.47 6.16 -52.48 -0.32 1.15 16 39 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 40 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.14 2.92 5.62 -52.49 -0.29 2.62 16 42 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -34.23 367.51 -6.96 -41.19 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.26 Total: 4.12 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -2.60 Total: -10.94 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.05 Total: -34.12 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: 0.18 Total: -21.44 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.86 Total: 15.64 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.23 -6.96 -41.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299478376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.391 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds