Wall clock time and date at job start Fri Apr 10 2020 18:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34781 * 119.99814 * 2 1 4 4 O 1.21284 * 119.99878 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00309 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47379 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47276 * 180.02562 * 6 5 3 8 8 C 1.34780 * 120.00062 * 179.73016 * 7 6 5 9 9 O 1.21718 * 119.99957 * 359.97438 * 8 7 6 10 10 C 1.46256 * 119.99800 * 179.97438 * 8 7 6 11 11 C 1.35022 * 119.99894 * 179.97438 * 10 8 7 12 12 C 1.46957 * 120.00300 * 180.02562 * 11 10 8 13 13 C 1.40029 * 120.09915 * 359.72225 * 12 11 10 14 14 C 1.37601 * 119.89798 * 179.69970 * 13 12 11 15 15 C 1.39180 * 120.09887 * 0.60088 * 14 13 12 16 16 O 1.35565 * 119.89376 * 179.69676 * 15 14 13 17 17 C 1.34792 * 116.99720 * 174.42235 * 16 15 14 18 18 H 1.07998 * 119.99415 * 5.05109 * 17 16 15 19 19 C 1.38711 * 120.00019 * 185.05884 * 17 16 15 20 20 N 1.31506 * 120.00201 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00134 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47190 * 90.00207 * 21 19 17 23 23 H 1.48497 * 109.46872 * 210.00189 * 21 19 17 24 24 H 1.48501 * 109.47001 * 330.00012 * 21 19 17 25 25 C 1.39171 * 120.20408 * 359.67315 * 15 14 13 26 26 C 1.37600 * 120.10110 * 0.02662 * 25 15 14 27 27 H 1.09007 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47398 * 300.00301 * 1 2 3 29 29 H 1.08996 * 109.47154 * 60.00808 * 1 2 3 30 30 H 0.97000 * 120.00326 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47049 * 59.99637 * 5 3 2 32 32 H 1.09000 * 109.46912 * 299.99909 * 5 3 2 33 33 H 1.08999 * 109.46934 * 60.00047 * 6 5 3 34 34 H 1.09000 * 109.47417 * 300.00080 * 6 5 3 35 35 H 0.97000 * 119.99935 * 359.97438 * 7 6 5 36 36 H 1.08004 * 120.00191 * 359.97438 * 10 8 7 37 37 H 1.08004 * 119.99907 * 359.97438 * 11 10 8 38 38 H 1.08004 * 120.05337 * 359.97438 * 13 12 11 39 39 H 1.07999 * 119.94808 * 180.27028 * 14 13 12 40 40 H 0.96998 * 120.00257 * 179.97438 * 20 19 17 41 41 H 1.08001 * 119.94985 * 180.02562 * 25 15 14 42 42 H 1.07997 * 120.05103 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1674 0.0006 6 6 4.1557 2.6099 -0.0002 7 7 5.6207 2.6100 -0.0002 8 6 6.2945 3.7772 -0.0064 9 8 5.6859 4.8313 -0.0123 10 6 7.7571 3.7772 -0.0058 11 6 8.4322 4.9466 -0.0125 12 6 9.9017 4.9467 -0.0126 13 6 10.6041 3.7354 0.0002 14 6 11.9801 3.7403 -0.0062 15 6 12.6737 4.9469 -0.0126 16 8 14.0294 4.9468 -0.0126 17 6 14.6413 6.1415 -0.1357 18 1 14.0562 7.0492 -0.1464 19 6 16.0223 6.2051 -0.2488 20 7 16.6193 7.3706 -0.3694 21 14 17.0343 4.6350 -0.2297 22 1 17.1925 4.1312 -1.6176 23 1 18.3721 4.9154 0.3506 24 1 16.3427 3.6103 0.5931 25 6 11.9799 6.1533 -0.0195 26 6 10.6040 6.1581 -0.0194 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.9500 -0.8400 0.0004 31 1 4.0095 0.6533 -0.8891 32 1 4.0088 0.6538 0.8908 33 1 3.7920 3.1242 0.8893 34 1 3.7927 3.1231 -0.8906 35 1 6.1057 1.7699 0.0006 36 1 8.2972 2.8419 -0.0001 37 1 7.8921 5.8819 -0.0186 38 1 10.0666 2.7986 0.0105 39 1 12.5226 2.8064 -0.0008 40 1 17.5851 7.4151 -0.4480 41 1 12.5224 7.0872 -0.0249 42 1 10.0664 7.0947 -0.0252 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299478376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:18 Heat of formation + Delta-G solvation = -89.891322 kcal Electronic energy + Delta-G solvation = -23926.722900 eV Core-core repulsion = 20064.646194 eV Total energy + Delta-G solvation = -3862.076706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05317 -40.87939 -40.38030 -38.59483 -36.30216 -35.60878 -34.75549 -34.18716 -32.22317 -31.97382 -29.87002 -27.99899 -27.35536 -25.21703 -23.86181 -23.54344 -22.05868 -21.52197 -20.63924 -19.68595 -19.13996 -18.52864 -17.98241 -17.07328 -17.00780 -16.74864 -16.45616 -16.28510 -15.99372 -15.77725 -15.59530 -15.42055 -14.89447 -14.78238 -14.43720 -14.30320 -14.22661 -14.04063 -13.75949 -13.37436 -13.17713 -13.14498 -12.85477 -12.72080 -12.61163 -12.45406 -12.34537 -11.92896 -11.29807 -11.17923 -11.14785 -10.92497 -10.66859 -10.17874 -10.07850 -9.90056 -8.72531 -8.52807 -6.24870 -0.26624 0.56763 1.11823 1.33409 1.38387 1.53309 1.60086 1.97275 2.27130 2.36782 2.58586 2.81451 3.02022 3.16650 3.62313 3.84286 3.94566 4.04231 4.06438 4.09323 4.30754 4.36091 4.46645 4.48030 4.57013 4.61156 4.64579 4.85659 4.86327 4.94951 4.96390 5.13797 5.23184 5.29797 5.40776 5.43085 5.43752 5.60153 5.71672 5.81289 5.84855 6.15955 6.53296 6.63989 6.80350 7.25395 7.32141 7.51473 8.58118 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.042875 B = 0.001614 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.911573 B =17348.170763 C =17969.532525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.721 5.721 3 C 0.507 3.493 4 O -0.593 6.593 5 C -0.137 4.137 6 C 0.136 3.864 7 N -0.709 5.709 8 C 0.545 3.455 9 O -0.600 6.600 10 C -0.233 4.233 11 C 0.007 3.993 12 C -0.159 4.159 13 C -0.038 4.038 14 C -0.192 4.192 15 C 0.135 3.865 16 O -0.233 6.233 17 C -0.405 4.405 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.918 5.918 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.258 1.258 25 C -0.244 4.244 26 C -0.048 4.048 27 H 0.112 0.888 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.423 0.577 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.423 0.577 36 H 0.165 0.835 37 H 0.117 0.883 38 H 0.172 0.828 39 H 0.141 0.859 40 H 0.286 0.714 41 H 0.111 0.889 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.615 -23.186 0.759 34.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.374 5.374 3 C 0.294 3.706 4 O -0.474 6.474 5 C -0.177 4.177 6 C 0.011 3.989 7 N -0.362 5.362 8 C 0.336 3.664 9 O -0.483 6.483 10 C -0.253 4.253 11 C -0.013 4.013 12 C -0.160 4.160 13 C -0.056 4.056 14 C -0.211 4.211 15 C 0.085 3.915 16 O -0.139 6.139 17 C -0.481 4.481 18 H 0.100 0.900 19 C -0.187 4.187 20 N -0.558 5.558 21 Si 0.794 3.206 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.182 1.182 25 C -0.263 4.263 26 C -0.066 4.066 27 H 0.130 0.870 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.260 0.740 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.261 0.739 36 H 0.182 0.818 37 H 0.135 0.865 38 H 0.189 0.811 39 H 0.159 0.841 40 H 0.096 0.904 41 H 0.129 0.871 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -26.153 -21.821 0.757 34.069 hybrid contribution 0.972 0.082 -0.040 0.977 sum -25.181 -21.739 0.717 33.274 Atomic orbital electron populations 1.21650 0.79293 1.04193 1.01155 1.45719 1.08199 1.08793 1.74647 1.21004 0.91067 0.83573 0.74933 1.90761 1.71733 1.33429 1.51442 1.21751 0.90463 0.96924 1.08531 1.20844 0.79437 0.97112 1.01509 1.45586 1.06726 1.08883 1.74988 1.18690 0.88970 0.83444 0.75311 1.90813 1.71609 1.33302 1.52597 1.22788 0.91395 1.00316 1.10802 1.22167 0.91291 0.98837 0.89049 1.18812 0.92501 0.93358 1.11342 1.21383 0.91859 0.98382 0.93930 1.20518 0.94664 0.95359 1.10579 1.19962 0.82864 0.95328 0.93389 1.83459 1.16320 1.32677 1.81453 1.20754 0.91867 0.83134 1.52306 0.89999 1.25334 0.96777 1.01492 0.95073 1.69706 1.11655 1.25842 1.48581 0.85195 0.77480 0.78392 0.79544 1.18941 1.19334 1.18233 1.21209 0.95518 0.97857 1.11722 1.21282 0.92405 0.98521 0.94430 0.86995 0.93559 0.93560 0.73981 0.84592 0.84562 0.93350 0.93386 0.73898 0.81780 0.86511 0.81129 0.84098 0.90397 0.87066 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.70 127.77 1.37 1.90 16 2 N -0.72 -4.27 5.71 -484.52 -2.77 -7.04 16 3 C 0.51 6.71 7.83 87.66 0.69 7.40 16 4 O -0.59 -15.01 15.98 -3.04 -0.05 -15.06 16 5 C -0.14 -0.82 5.81 29.85 0.17 -0.65 16 6 C 0.14 2.27 4.96 86.38 0.43 2.70 16 7 N -0.71 -10.24 5.55 -467.51 -2.60 -12.84 16 8 C 0.54 12.92 7.74 86.33 0.67 13.59 16 9 O -0.60 -20.65 16.23 -4.41 -0.07 -20.72 16 10 C -0.23 -4.70 9.41 23.61 0.22 -4.47 16 11 C 0.01 0.17 9.45 23.82 0.23 0.39 16 12 C -0.16 -4.66 5.87 -20.13 -0.12 -4.78 16 13 C -0.04 -1.01 9.40 22.55 0.21 -0.80 16 14 C -0.19 -6.52 9.97 22.35 0.22 -6.30 16 15 C 0.14 5.96 6.66 22.72 0.15 6.11 16 16 O -0.23 -12.04 8.57 -20.32 -0.17 -12.22 16 17 C -0.40 -23.12 9.94 67.93 0.68 -22.44 16 18 H 0.08 4.94 5.41 -2.91 -0.02 4.92 16 19 C 0.01 0.71 5.49 84.85 0.47 1.18 16 20 N -0.92 -53.64 13.96 21.62 0.30 -53.34 16 21 Si 0.97 43.54 28.62 68.60 1.96 45.50 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 25 C -0.24 -10.38 9.14 22.34 0.20 -10.17 16 26 C -0.05 -1.66 9.78 22.55 0.22 -1.44 16 27 H 0.11 -0.08 8.14 -2.38 -0.02 -0.10 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.42 -0.93 8.83 -92.71 -0.82 -1.75 16 31 H 0.14 -0.03 8.14 -2.39 -0.02 -0.04 16 32 H 0.14 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 34 H 0.05 1.08 8.10 -2.39 -0.02 1.07 16 35 H 0.42 2.20 8.45 -92.71 -0.78 1.41 16 36 H 0.16 1.99 6.07 -2.91 -0.02 1.97 16 37 H 0.12 3.26 7.52 -2.91 -0.02 3.24 16 38 H 0.17 2.80 6.16 -2.91 -0.02 2.78 16 39 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 40 H 0.29 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.11 5.25 5.62 -2.91 -0.02 5.23 16 42 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -84.01 367.51 1.89 -82.12 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -0.52 Total: 11.39 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 5.81 Total: -17.81 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -5.06 Total: -73.22 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -0.29 Total: -47.99 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.96 Total: 45.50 kcal Total: -84.01 1.89 -82.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299478376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.770 kcal (2) G-P(sol) polarization free energy of solvation -84.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds