Wall clock time and date at job start Fri Apr 10 2020 18:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 119.99882 * 2 1 4 4 N 1.34773 * 120.00123 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00096 * 180.02562 * 4 2 1 6 6 H 1.08994 * 109.49969 * 34.93271 * 5 4 2 7 7 C 1.53044 * 109.49549 * 274.83230 * 5 4 2 8 8 C 1.53042 * 109.53542 * 178.68272 * 7 5 4 9 9 C 1.52757 * 109.38281 * 61.24490 * 8 7 5 10 10 N 1.46931 * 109.00917 * 305.58535 * 9 8 7 11 11 S 1.65599 * 120.63079 * 233.58647 * 10 9 8 12 12 O 1.42092 * 104.27852 * 153.64744 * 11 10 9 13 13 O 1.42106 * 104.27584 * 25.78975 * 11 10 9 14 14 C 1.81396 * 104.44861 * 269.72092 * 11 10 9 15 15 C 1.52998 * 109.47193 * 180.02562 * 14 11 10 16 16 C 1.52999 * 109.47303 * 179.97438 * 15 14 11 17 17 C 1.50702 * 109.47525 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99441 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00075 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00481 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99886 * 179.73007 * 19 17 16 22 22 H 1.48502 * 109.46964 * 270.27509 * 21 19 17 23 23 H 1.48505 * 109.47036 * 30.26897 * 21 19 17 24 24 H 1.48490 * 109.47395 * 150.27411 * 21 19 17 25 25 C 1.46927 * 118.73593 * 53.30974 * 10 9 8 26 26 H 1.09003 * 109.47514 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47251 * 300.00467 * 1 2 3 28 28 H 1.08998 * 109.47286 * 59.99905 * 1 2 3 29 29 H 0.97005 * 119.99602 * 359.97438 * 4 2 1 30 30 H 1.08993 * 109.46268 * 298.70476 * 7 5 4 31 31 H 1.09007 * 109.45894 * 58.66411 * 7 5 4 32 32 H 1.09002 * 109.49015 * 181.31829 * 8 7 5 33 33 H 1.08994 * 109.49657 * 301.37991 * 8 7 5 34 34 H 1.09004 * 109.50869 * 185.70315 * 9 8 7 35 35 H 1.09005 * 109.43323 * 65.42205 * 9 8 7 36 36 H 1.09000 * 109.47792 * 59.99711 * 14 11 10 37 37 H 1.09007 * 109.47147 * 300.00104 * 14 11 10 38 38 H 1.08995 * 109.47540 * 59.99723 * 15 14 11 39 39 H 1.09001 * 109.46719 * 299.99523 * 15 14 11 40 40 H 1.09009 * 109.47378 * 59.99763 * 16 15 14 41 41 H 1.08998 * 109.47458 * 300.00225 * 16 15 14 42 42 H 0.97005 * 119.99656 * 359.72741 * 20 19 17 43 43 H 1.08999 * 109.58653 * 66.43273 * 25 10 9 44 44 H 1.09003 * 109.58373 * 186.71362 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1671 0.0000 6 1 4.0094 -0.3252 0.5891 7 6 4.1572 -1.0446 -1.4372 8 6 5.6872 -1.0115 -1.4350 9 6 6.2216 -2.3133 -0.8407 10 7 5.6202 -2.5168 0.4843 11 16 6.5739 -2.7800 1.8123 12 8 5.7909 -2.3161 2.9035 13 8 7.8108 -2.1625 1.4834 14 6 6.7618 -4.5827 1.8846 15 6 7.6335 -4.9569 3.0850 16 6 7.7915 -6.4775 3.1463 17 6 8.6506 -6.8461 4.3284 18 1 9.0441 -6.0731 4.9718 19 6 8.9341 -8.1701 4.5884 20 7 8.4544 -9.1114 3.8052 21 14 10.0052 -8.6265 6.0492 22 1 11.4292 -8.6557 5.6289 23 1 9.8277 -7.6200 7.1267 24 1 9.6102 -9.9662 6.5532 25 6 4.1569 -2.4763 0.6097 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 1.6958 -2.0072 -0.0005 30 1 3.8133 -1.8997 -2.0191 31 1 3.7746 -0.1257 -1.8817 32 1 6.0501 -0.9007 -2.4569 33 1 6.0320 -0.1706 -0.8333 34 1 7.3057 -2.2515 -0.7444 35 1 5.9576 -3.1453 -1.4936 36 1 7.2342 -4.9359 0.9679 37 1 5.7809 -5.0464 1.9897 38 1 7.1608 -4.6039 4.0015 39 1 8.6144 -4.4933 2.9803 40 1 8.2641 -6.8310 2.2299 41 1 6.8105 -6.9408 3.2512 42 1 7.8979 -8.8745 3.0468 43 1 3.7210 -3.3219 0.0776 44 1 3.8789 -2.5246 1.6626 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330669766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:24 Heat of formation + Delta-G solvation = -132.741970 kcal Electronic energy + Delta-G solvation = -25108.995506 eV Core-core repulsion = 21380.504608 eV Total energy + Delta-G solvation = -3728.490898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.27924 -38.43437 -37.10716 -35.87361 -34.96945 -34.82410 -32.48166 -32.31845 -31.20052 -28.93786 -27.52207 -24.98875 -23.46023 -23.42050 -21.24068 -20.86231 -20.77137 -18.79326 -17.87388 -17.34504 -16.97820 -16.54251 -16.18423 -15.83162 -15.59634 -15.07313 -14.66773 -14.33554 -14.18964 -14.06136 -13.91613 -13.76270 -13.32868 -13.26382 -12.87138 -12.58614 -12.18937 -12.11014 -12.10016 -11.99013 -11.94158 -11.77612 -11.50973 -11.31985 -11.27284 -11.02429 -10.83402 -10.79955 -10.20056 -10.16246 -10.13835 -9.87120 -9.51483 -9.16043 -8.60854 -8.39677 -6.43878 -4.13825 0.26952 2.31048 2.47802 2.93020 3.41487 3.44776 3.60730 3.87791 4.14860 4.22977 4.41192 4.49481 4.51573 4.64573 4.70830 4.78479 4.86147 4.94282 5.01880 5.03223 5.08540 5.15641 5.34107 5.34926 5.39470 5.43810 5.53667 5.65408 5.72008 5.74201 5.85264 5.96724 6.07256 6.11471 6.26530 6.34751 6.67120 7.12966 7.22424 7.34402 7.88462 8.10084 8.38668 8.80083 9.58481 10.96927 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024671 B = 0.002607 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.674609 B =10737.021807 C =11129.595945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.511 3.489 3 O -0.545 6.545 4 N -0.726 5.726 5 C 0.131 3.869 6 H 0.095 0.905 7 C -0.125 4.125 8 C -0.129 4.129 9 C 0.114 3.886 10 N -1.001 6.001 11 S 2.599 3.401 12 O -0.957 6.957 13 O -0.955 6.955 14 C -0.610 4.610 15 C -0.099 4.099 16 C 0.018 3.982 17 C -0.607 4.607 18 H 0.052 0.948 19 C 0.016 3.984 20 N -0.912 5.912 21 Si 1.072 2.928 22 H -0.287 1.287 23 H -0.287 1.287 24 H -0.284 1.284 25 C 0.112 3.888 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.401 0.599 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.011 0.989 41 H 0.011 0.989 42 H 0.268 0.732 43 H 0.074 0.926 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.236 14.114 -13.521 24.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.298 3.702 3 O -0.422 6.422 4 N -0.378 5.378 5 C 0.025 3.975 6 H 0.113 0.887 7 C -0.164 4.164 8 C -0.169 4.169 9 C -0.011 4.011 10 N -0.837 5.837 11 S 2.696 3.304 12 O -0.947 6.947 13 O -0.945 6.945 14 C -0.742 4.742 15 C -0.138 4.138 16 C -0.021 4.021 17 C -0.645 4.645 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.548 5.548 21 Si 0.900 3.100 22 H -0.213 1.213 23 H -0.213 1.213 24 H -0.209 1.209 25 C -0.014 4.014 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.236 0.764 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.791 14.294 -12.154 23.286 hybrid contribution -1.153 0.182 -1.217 1.686 sum -14.944 14.476 -13.371 24.732 Atomic orbital electron populations 1.21851 0.91520 1.04286 1.05369 1.20839 0.90623 0.83447 0.75242 1.90745 1.70719 1.31380 1.49344 1.46103 1.06968 1.08972 1.75789 1.21284 0.79436 0.99383 0.97433 0.88700 1.21863 0.95834 1.02621 0.96091 1.21760 0.95108 0.98259 1.01733 1.21441 0.98992 0.97760 0.82929 1.57837 1.15178 1.87421 1.23311 1.05465 0.73607 0.78481 0.72848 1.93564 1.69829 1.79381 1.51926 1.93567 1.44002 1.73994 1.82954 1.30618 1.10239 1.23956 1.09358 1.21368 0.97195 1.02627 0.92656 1.19187 0.96879 0.88421 0.97588 1.22095 1.34507 0.95000 1.12933 0.92941 1.25893 0.98086 0.92717 1.02124 1.70774 1.32476 1.35288 1.16306 0.83500 0.75797 0.75807 0.74896 1.21328 1.21338 1.20925 1.21553 0.80040 0.96781 1.03036 0.90496 0.88631 0.88774 0.76403 0.91496 0.91185 0.90209 0.90992 0.88332 0.91162 0.85437 0.85530 0.91414 0.91388 0.97031 0.97043 0.92151 0.90815 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.39 36.00 0.37 -0.43 16 2 C 0.51 4.61 7.91 -10.99 -0.09 4.52 16 3 O -0.55 -7.59 16.76 5.55 0.09 -7.50 16 4 N -0.73 -5.23 5.08 -53.69 -0.27 -5.51 16 5 C 0.13 1.22 2.61 -67.81 -0.18 1.04 16 6 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 7 C -0.13 -1.03 5.46 -26.69 -0.15 -1.18 16 8 C -0.13 -1.09 6.06 -26.83 -0.16 -1.26 16 9 C 0.11 1.03 6.40 -3.93 -0.03 1.00 16 10 N -1.00 -10.75 3.23 -113.76 -0.37 -11.12 16 11 S 2.60 37.66 5.45 -107.50 -0.59 37.08 16 12 O -0.96 -16.48 16.59 -57.54 -0.95 -17.43 16 13 O -0.95 -16.41 16.58 -57.54 -0.95 -17.37 16 14 C -0.61 -9.07 6.18 37.16 0.23 -8.84 16 15 C -0.10 -2.00 5.16 -26.73 -0.14 -2.14 16 16 C 0.02 0.44 4.28 -27.88 -0.12 0.32 16 17 C -0.61 -17.25 9.11 -34.44 -0.31 -17.56 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 20 N -0.91 -27.63 13.65 55.43 0.76 -26.87 16 21 Si 1.07 25.25 29.90 -169.99 -5.08 20.16 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.11 1.00 5.90 -3.71 -0.02 0.98 16 26 H 0.08 0.17 7.91 -51.93 -0.41 -0.24 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.40 1.57 8.44 -40.82 -0.34 1.22 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.96 6.85 -51.93 -0.36 0.60 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.13 1.67 8.14 -51.92 -0.42 1.25 16 37 H 0.13 1.64 8.14 -51.92 -0.42 1.22 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.01 0.29 8.01 -51.92 -0.42 -0.12 16 41 H 0.01 0.29 8.00 -51.93 -0.42 -0.13 16 42 H 0.27 8.00 7.22 -40.82 -0.29 7.71 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.98 6.86 -51.93 -0.36 0.62 16 LS Contribution 369.82 15.07 5.57 5.57 Total: -1.00 -38.20 369.82 -9.74 -47.94 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -7.26 Total: -1.77 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -0.68 Total: -23.19 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.12 Total: -43.49 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -1.82 Total: -42.30 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.16 kcal Atomic # 16 Polarization: 37.66 SS G_CDS: -0.59 Total: 37.08 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.20 -9.74 -47.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330669766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.805 kcal (2) G-P(sol) polarization free energy of solvation -38.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds