Wall clock time and date at job start Fri Apr 10 2020 18:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 119.99882 * 2 1 4 4 N 1.34773 * 120.00123 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00096 * 180.02562 * 4 2 1 6 6 H 1.08994 * 109.49969 * 34.93271 * 5 4 2 7 7 C 1.53044 * 109.49549 * 274.83230 * 5 4 2 8 8 C 1.53042 * 109.53542 * 178.68272 * 7 5 4 9 9 C 1.52757 * 109.38281 * 61.24490 * 8 7 5 10 10 N 1.46931 * 109.00917 * 305.58535 * 9 8 7 11 11 S 1.65599 * 120.63079 * 233.58647 * 10 9 8 12 12 O 1.42092 * 104.27852 * 153.64744 * 11 10 9 13 13 O 1.42106 * 104.27584 * 25.78975 * 11 10 9 14 14 C 1.81396 * 104.44861 * 269.72092 * 11 10 9 15 15 C 1.52998 * 109.47193 * 180.02562 * 14 11 10 16 16 C 1.52999 * 109.47303 * 179.97438 * 15 14 11 17 17 C 1.50702 * 109.47525 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99441 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00075 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00481 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99886 * 179.73007 * 19 17 16 22 22 H 1.48502 * 109.46964 * 270.27509 * 21 19 17 23 23 H 1.48505 * 109.47036 * 30.26897 * 21 19 17 24 24 H 1.48490 * 109.47395 * 150.27411 * 21 19 17 25 25 C 1.46927 * 118.73593 * 53.30974 * 10 9 8 26 26 H 1.09003 * 109.47514 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47251 * 300.00467 * 1 2 3 28 28 H 1.08998 * 109.47286 * 59.99905 * 1 2 3 29 29 H 0.97005 * 119.99602 * 359.97438 * 4 2 1 30 30 H 1.08993 * 109.46268 * 298.70476 * 7 5 4 31 31 H 1.09007 * 109.45894 * 58.66411 * 7 5 4 32 32 H 1.09002 * 109.49015 * 181.31829 * 8 7 5 33 33 H 1.08994 * 109.49657 * 301.37991 * 8 7 5 34 34 H 1.09004 * 109.50869 * 185.70315 * 9 8 7 35 35 H 1.09005 * 109.43323 * 65.42205 * 9 8 7 36 36 H 1.09000 * 109.47792 * 59.99711 * 14 11 10 37 37 H 1.09007 * 109.47147 * 300.00104 * 14 11 10 38 38 H 1.08995 * 109.47540 * 59.99723 * 15 14 11 39 39 H 1.09001 * 109.46719 * 299.99523 * 15 14 11 40 40 H 1.09009 * 109.47378 * 59.99763 * 16 15 14 41 41 H 1.08998 * 109.47458 * 300.00225 * 16 15 14 42 42 H 0.97005 * 119.99656 * 359.72741 * 20 19 17 43 43 H 1.08999 * 109.58653 * 66.43273 * 25 10 9 44 44 H 1.09003 * 109.58373 * 186.71362 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1671 0.0000 6 1 4.0094 -0.3252 0.5891 7 6 4.1572 -1.0446 -1.4372 8 6 5.6872 -1.0115 -1.4350 9 6 6.2216 -2.3133 -0.8407 10 7 5.6202 -2.5168 0.4843 11 16 6.5739 -2.7800 1.8123 12 8 5.7909 -2.3161 2.9035 13 8 7.8108 -2.1625 1.4834 14 6 6.7618 -4.5827 1.8846 15 6 7.6335 -4.9569 3.0850 16 6 7.7915 -6.4775 3.1463 17 6 8.6506 -6.8461 4.3284 18 1 9.0441 -6.0731 4.9718 19 6 8.9341 -8.1701 4.5884 20 7 8.4544 -9.1114 3.8052 21 14 10.0052 -8.6265 6.0492 22 1 11.4292 -8.6557 5.6289 23 1 9.8277 -7.6200 7.1267 24 1 9.6102 -9.9662 6.5532 25 6 4.1569 -2.4763 0.6097 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 1.6958 -2.0072 -0.0005 30 1 3.8133 -1.8997 -2.0191 31 1 3.7746 -0.1257 -1.8817 32 1 6.0501 -0.9007 -2.4569 33 1 6.0320 -0.1706 -0.8333 34 1 7.3057 -2.2515 -0.7444 35 1 5.9576 -3.1453 -1.4936 36 1 7.2342 -4.9359 0.9679 37 1 5.7809 -5.0464 1.9897 38 1 7.1608 -4.6039 4.0015 39 1 8.6144 -4.4933 2.9803 40 1 8.2641 -6.8310 2.2299 41 1 6.8105 -6.9408 3.2512 42 1 7.8979 -8.8745 3.0468 43 1 3.7210 -3.3219 0.0776 44 1 3.8789 -2.5246 1.6626 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330669766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:23 Heat of formation + Delta-G solvation = -162.253425 kcal Electronic energy + Delta-G solvation = -25110.275219 eV Core-core repulsion = 21380.504608 eV Total energy + Delta-G solvation = -3729.770611 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.00590 -39.21109 -38.37971 -37.15995 -36.79151 -35.60753 -34.25272 -33.23486 -31.83016 -29.49483 -29.31623 -25.85403 -25.35309 -24.13835 -22.76151 -21.77615 -21.56054 -19.86437 -19.10934 -18.77207 -18.01800 -17.45923 -17.31752 -16.98848 -16.28560 -16.20385 -15.69411 -15.57879 -15.46316 -15.27097 -14.89619 -14.83806 -14.59242 -13.96736 -13.94512 -13.67174 -13.43112 -13.29333 -13.22066 -13.12595 -13.08285 -13.02838 -12.62769 -12.54825 -12.49060 -12.07363 -12.00841 -11.95236 -11.89275 -11.78013 -11.48988 -10.97105 -10.72198 -10.57113 -10.26533 -9.94315 -8.72147 -6.43152 -0.90762 1.50082 1.52084 1.60272 1.63523 1.78672 2.26795 2.53785 2.71798 3.04444 3.12472 3.43240 3.63912 3.73193 3.78326 3.95069 3.96435 4.03645 4.19545 4.24164 4.28699 4.47145 4.48186 4.52489 4.67304 4.71396 4.75284 4.78888 4.83028 4.86366 4.93181 5.02094 5.10414 5.16886 5.24836 5.29243 5.35810 5.41091 5.57916 5.94414 6.15215 6.55089 6.57251 7.27314 7.37353 8.69651 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024671 B = 0.002607 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.674609 B =10737.021807 C =11129.595945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.503 3.497 3 O -0.604 6.604 4 N -0.711 5.711 5 C 0.130 3.870 6 H 0.053 0.947 7 C -0.118 4.118 8 C -0.129 4.129 9 C 0.107 3.893 10 N -0.994 5.994 11 S 2.620 3.380 12 O -0.988 6.988 13 O -0.986 6.986 14 C -0.604 4.604 15 C -0.101 4.101 16 C 0.016 3.984 17 C -0.629 4.629 18 H 0.049 0.951 19 C -0.036 4.036 20 N -0.935 5.935 21 Si 1.117 2.883 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.280 1.280 25 C 0.109 3.891 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.421 0.579 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.259 0.741 43 H 0.117 0.883 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.499 13.187 -14.684 25.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.292 3.708 3 O -0.485 6.485 4 N -0.364 5.364 5 C 0.023 3.977 6 H 0.071 0.929 7 C -0.156 4.156 8 C -0.169 4.169 9 C -0.017 4.017 10 N -0.833 5.833 11 S 2.717 3.283 12 O -0.978 6.978 13 O -0.976 6.976 14 C -0.735 4.735 15 C -0.141 4.141 16 C -0.023 4.023 17 C -0.667 4.667 18 H 0.067 0.933 19 C -0.234 4.234 20 N -0.572 5.572 21 Si 0.938 3.062 22 H -0.197 1.197 23 H -0.197 1.197 24 H -0.205 1.205 25 C -0.017 4.017 26 H 0.128 0.872 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.259 0.741 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.167 0.833 37 H 0.168 0.832 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.068 0.932 43 H 0.135 0.865 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.075 13.339 -13.324 24.140 hybrid contribution -0.809 0.511 -0.914 1.323 sum -15.885 13.851 -14.237 25.434 Atomic orbital electron populations 1.21870 0.87861 1.06617 1.05785 1.21686 0.92391 0.82823 0.73892 1.90722 1.72184 1.33502 1.52130 1.45985 1.06163 1.09647 1.74642 1.21146 0.80727 0.98144 0.97717 0.92903 1.21802 0.95442 1.03037 0.95328 1.21782 0.95413 0.97141 1.02526 1.21714 0.98557 0.99222 0.82196 1.57507 1.15795 1.87051 1.22955 1.04557 0.72955 0.77885 0.72901 1.93521 1.70395 1.79870 1.54050 1.93524 1.45926 1.74608 1.83530 1.30527 1.10567 1.24602 1.07810 1.21197 0.98382 0.99286 0.95198 1.19128 0.95570 0.91659 0.95905 1.22581 1.34887 0.95252 1.14016 0.93255 1.27379 0.98782 0.93068 1.04129 1.70895 1.33648 1.35817 1.16888 0.82935 0.74913 0.76051 0.72308 1.19708 1.19654 1.20504 1.21787 0.78745 0.97943 1.03238 0.87213 0.88480 0.87953 0.74063 0.88643 0.92731 0.87896 0.93616 0.89228 0.87534 0.83281 0.83237 0.91802 0.91799 0.97986 0.97909 0.93177 0.86471 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.39 71.23 0.74 -0.44 16 2 C 0.50 8.70 7.91 87.66 0.69 9.40 16 3 O -0.60 -17.50 16.76 -3.04 -0.05 -17.55 16 4 N -0.71 -9.00 5.08 -442.17 -2.25 -11.25 16 5 C 0.13 2.30 2.61 45.07 0.12 2.41 16 6 H 0.05 1.39 7.58 -2.39 -0.02 1.38 16 7 C -0.12 -1.73 5.46 30.62 0.17 -1.56 16 8 C -0.13 -2.01 6.06 30.53 0.19 -1.82 16 9 C 0.11 1.68 6.40 86.22 0.55 2.23 16 10 N -0.99 -19.60 3.23 -513.82 -1.66 -21.26 16 11 S 2.62 74.33 5.45 -56.49 -0.31 74.02 16 12 O -0.99 -34.17 16.59 -127.65 -2.12 -36.29 16 13 O -0.99 -33.97 16.58 -127.65 -2.12 -36.09 16 14 C -0.60 -17.01 6.18 71.98 0.44 -16.56 16 15 C -0.10 -4.08 5.16 30.59 0.16 -3.92 16 16 C 0.02 0.78 4.28 29.85 0.13 0.91 16 17 C -0.63 -35.99 9.11 25.60 0.23 -35.76 16 18 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 19 C -0.04 -2.06 5.46 84.65 0.46 -1.59 16 20 N -0.94 -56.91 13.65 21.45 0.29 -56.61 16 21 Si 1.12 50.20 29.90 68.60 2.05 52.25 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 25 C 0.11 1.69 5.90 86.36 0.51 2.20 16 26 H 0.11 0.06 7.91 -2.39 -0.02 0.04 16 27 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.42 1.89 8.44 -92.70 -0.78 1.11 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.61 6.85 -2.38 -0.02 1.59 16 35 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.15 3.55 8.14 -2.39 -0.02 3.53 16 37 H 0.15 3.51 8.14 -2.39 -0.02 3.49 16 38 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.00 0.09 8.01 -2.38 -0.02 0.08 16 41 H 0.00 0.13 8.00 -2.39 -0.02 0.11 16 42 H 0.26 15.67 7.22 -92.70 -0.67 15.00 16 43 H 0.12 0.86 8.14 -2.39 -0.02 0.85 16 44 H 0.09 1.64 6.86 -2.39 -0.02 1.62 16 Total: -1.00 -86.10 369.82 -1.46 -87.55 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.30 Total: 9.72 kcal Atomic # 6 Polarization: -48.89 SS G_CDS: 4.39 Total: -44.50 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -3.61 Total: -89.12 kcal Atomic # 8 Polarization: -85.64 SS G_CDS: -4.29 Total: -89.92 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Atomic # 16 Polarization: 74.33 SS G_CDS: -0.31 Total: 74.02 kcal Total: -86.10 -1.46 -87.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330669766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.698 kcal (2) G-P(sol) polarization free energy of solvation -86.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds