Wall clock time and date at job start Fri Apr 10 2020 18:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81400 * 109.47580 * 2 1 4 4 O 1.42095 * 110.54125 * 68.37359 * 3 2 1 5 5 O 1.42105 * 110.53924 * 291.62516 * 3 2 1 6 6 N 1.65601 * 104.44824 * 180.02562 * 3 2 1 7 7 C 1.46963 * 120.59476 * 270.01694 * 6 3 2 8 8 C 1.52925 * 108.69366 * 235.08111 * 7 6 3 9 9 N 1.46969 * 108.87091 * 310.79074 * 8 7 6 10 10 C 1.34769 * 120.59384 * 235.20693 * 9 8 7 11 11 O 1.21279 * 120.00457 * 174.51823 * 10 9 8 12 12 C 1.50698 * 120.00036 * 354.51820 * 10 9 8 13 13 C 1.53007 * 109.47542 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47542 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99775 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99738 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00415 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99773 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47208 * 179.97438 * 18 16 14 20 20 H 1.48507 * 109.46783 * 299.99428 * 18 16 14 21 21 H 1.48499 * 109.47125 * 59.99232 * 18 16 14 22 22 C 1.46965 * 118.81007 * 54.93616 * 9 8 7 23 23 H 1.09002 * 109.61306 * 64.77034 * 22 9 8 24 24 C 1.52999 * 109.60897 * 185.10926 * 22 9 8 25 25 C 1.46963 * 120.59217 * 90.00237 * 6 3 2 26 26 H 1.09000 * 109.47163 * 59.99917 * 1 2 3 27 27 H 1.08997 * 109.47536 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46770 * 300.00668 * 1 2 3 29 29 H 1.09003 * 109.47262 * 239.99342 * 2 1 3 30 30 H 1.09000 * 109.47163 * 120.00083 * 2 1 3 31 31 H 1.09005 * 109.60710 * 354.95604 * 7 6 3 32 32 H 1.09000 * 109.60583 * 115.28864 * 7 6 3 33 33 H 1.08997 * 109.52484 * 190.95232 * 8 7 6 34 34 H 1.09000 * 109.46062 * 70.58825 * 8 7 6 35 35 H 1.09005 * 109.47150 * 60.00049 * 12 10 9 36 36 H 1.09006 * 109.47572 * 299.99849 * 12 10 9 37 37 H 1.09005 * 109.46588 * 60.00036 * 13 12 10 38 38 H 1.08992 * 109.46949 * 300.00496 * 13 12 10 39 39 H 0.97006 * 120.00188 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.47022 * 57.50838 * 24 22 9 41 41 H 1.08994 * 109.47376 * 177.51428 * 24 22 9 42 42 H 1.09003 * 109.46998 * 297.51441 * 24 22 9 43 43 H 1.08994 * 109.61515 * 5.04728 * 25 6 3 44 44 H 1.09004 * 109.74979 * 244.61840 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.8387 2.3438 1.2369 5 8 1.8386 2.3438 -1.2371 6 7 3.7844 1.5651 -0.0007 7 6 4.5300 1.4990 1.2640 8 6 5.5936 2.5978 1.2639 9 7 6.3387 2.5380 -0.0015 10 6 7.6812 2.4191 -0.0020 11 8 8.2764 2.2709 -1.0482 12 6 8.4427 2.4704 1.2974 13 6 9.9387 2.3118 1.0185 14 6 10.7003 2.3637 2.3178 15 1 10.1704 2.4969 3.2493 16 6 12.0737 2.2421 2.3171 17 7 12.7190 2.0804 1.1827 18 14 13.0177 2.3058 3.9278 19 1 14.4697 2.1520 3.6570 20 1 12.7734 3.6106 4.5935 21 1 12.5604 1.2049 4.8134 22 6 5.5931 2.6043 -1.2662 23 1 5.1103 3.5774 -1.3558 24 6 6.5530 2.3973 -2.4395 25 6 4.5289 1.4998 -1.2661 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8466 1.6494 2.0998 32 1 5.0102 0.5247 1.3550 33 1 6.2772 2.4431 2.0987 34 1 5.1109 3.5704 1.3587 35 1 8.1070 1.6623 1.9474 36 1 8.2634 3.4281 1.7861 37 1 10.2747 3.1197 0.3683 38 1 10.1177 1.3541 0.5300 39 1 13.6853 1.9945 1.1823 40 1 7.0627 1.4404 -2.3276 41 1 5.9914 2.4028 -3.3737 42 1 7.2887 3.2015 -2.4532 43 1 3.8450 1.6508 -2.1012 44 1 5.0115 0.5269 -1.3598 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360594219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:06 Heat of formation + Delta-G solvation = -92.175384 kcal Electronic energy + Delta-G solvation = -25781.215295 eV Core-core repulsion = 22054.483496 eV Total energy + Delta-G solvation = -3726.731799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.22655 -37.53130 -37.49872 -36.25763 -33.90289 -33.84179 -33.60375 -32.85625 -30.75194 -28.34254 -26.19006 -25.64469 -24.42556 -23.02600 -22.44018 -20.77014 -19.38141 -18.62955 -17.76759 -16.84474 -16.76081 -16.51874 -15.89433 -15.69259 -15.36615 -15.28251 -14.62231 -14.50087 -14.40116 -13.74138 -13.66750 -13.41147 -13.00490 -12.91616 -12.72297 -12.48275 -12.39663 -12.23582 -12.14439 -12.09534 -12.04941 -11.70472 -11.56588 -11.30945 -11.11315 -11.03802 -10.92347 -10.90570 -10.61940 -9.95930 -9.70614 -9.55555 -9.12943 -8.50819 -8.34605 -8.25322 -5.97312 -4.01796 -0.14348 2.22152 3.16994 3.21047 3.33382 3.38452 3.40020 3.48354 3.72693 4.07369 4.29689 4.33582 4.46003 4.69923 4.70667 4.89904 5.01892 5.05886 5.07476 5.08569 5.21067 5.34958 5.37695 5.40530 5.42105 5.47462 5.62833 5.69455 5.82882 5.91124 6.16083 6.18173 6.18844 6.32105 6.55226 6.84624 6.90244 7.72541 7.73789 7.84810 8.05642 8.37398 8.73920 9.06518 9.61864 11.13532 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025805 B = 0.002886 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.808996 B = 9700.267638 C =10372.428298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.633 4.633 3 S 2.606 3.394 4 O -0.952 6.952 5 O -0.952 6.952 6 N -0.999 5.999 7 C 0.101 3.899 8 C 0.098 3.902 9 N -0.621 5.621 10 C 0.513 3.487 11 O -0.523 6.523 12 C -0.131 4.131 13 C 0.039 3.961 14 C -0.528 4.528 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.287 1.287 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.134 3.866 23 H 0.072 0.928 24 C -0.135 4.135 25 C 0.106 3.894 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.142 -4.636 -2.416 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.762 4.762 3 S 2.699 3.301 4 O -0.942 6.942 5 O -0.942 6.942 6 N -0.837 5.837 7 C -0.025 4.025 8 C -0.027 4.027 9 N -0.358 5.358 10 C 0.304 3.696 11 O -0.398 6.398 12 C -0.171 4.171 13 C 0.001 3.999 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.213 1.213 20 H -0.202 1.202 21 H -0.203 1.203 22 C 0.029 3.971 23 H 0.090 0.910 24 C -0.192 4.192 25 C -0.020 4.020 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.119 0.881 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.100 -3.949 -3.062 25.592 hybrid contribution 0.627 -0.781 0.984 1.404 sum -24.473 -4.730 -2.078 25.012 Atomic orbital electron populations 1.21507 0.90547 1.05083 1.03462 1.30573 1.07139 1.26830 1.11690 1.05237 0.72948 0.77498 0.74376 1.93594 1.83086 1.72382 1.45142 1.93596 1.83091 1.72393 1.45170 1.57669 1.23971 1.89791 1.12270 1.21860 0.95289 1.00298 0.85017 1.21914 0.94495 0.98796 0.87473 1.48246 1.06429 1.75301 1.05823 1.21539 0.80643 0.74454 0.92971 1.90718 1.68408 1.47548 1.33147 1.21938 1.00111 1.02244 0.92825 1.18883 0.85830 0.98394 0.96745 1.21181 0.91854 1.50574 0.93016 0.92696 1.25015 0.97865 0.95290 0.96156 1.69982 1.08233 1.49286 1.25342 0.86661 0.78862 0.78540 0.83907 1.21305 1.20240 1.20266 1.21495 0.92443 0.97847 0.85301 0.91014 1.22192 0.97647 1.05581 0.93809 1.22029 0.95041 1.00235 0.84691 0.90961 0.90003 0.90937 0.85064 0.85012 0.87767 0.90563 0.87674 0.90965 0.90398 0.90282 0.95874 0.95891 0.92892 0.90503 0.94137 0.90339 0.88106 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.92 37.16 0.37 -0.40 16 2 C -0.63 -3.42 6.90 37.16 0.26 -3.17 16 3 S 2.61 23.27 5.45 -107.50 -0.59 22.69 16 4 O -0.95 -11.01 16.60 -57.54 -0.96 -11.97 16 5 O -0.95 -11.29 16.59 -57.54 -0.95 -12.25 16 6 N -1.00 -9.20 3.20 -113.51 -0.36 -9.56 16 7 C 0.10 0.90 6.56 -3.83 -0.03 0.87 16 8 C 0.10 1.09 6.46 -3.82 -0.02 1.06 16 9 N -0.62 -8.85 2.95 -165.22 -0.49 -9.33 16 10 C 0.51 9.46 7.61 -10.99 -0.08 9.37 16 11 O -0.52 -11.32 11.36 5.56 0.06 -11.26 16 12 C -0.13 -2.57 4.03 -27.88 -0.11 -2.68 16 13 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 14 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 18 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.13 1.73 3.64 -67.48 -0.25 1.48 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 C -0.13 -1.90 7.59 37.16 0.28 -1.62 16 25 C 0.11 1.06 5.90 -3.60 -0.02 1.04 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.13 0.54 8.14 -51.92 -0.42 0.11 16 30 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.10 0.77 6.88 -51.93 -0.36 0.41 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.11 1.09 5.94 -51.93 -0.31 0.78 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.37 7.49 -51.93 -0.39 0.98 16 36 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 37 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.08 1.22 6.74 -51.93 -0.35 0.87 16 41 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 1.31 6.75 -51.93 -0.35 0.96 16 43 H 0.10 0.89 6.88 -51.93 -0.36 0.53 16 44 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -36.51 360.15 -9.42 -45.93 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -7.14 Total: -3.12 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -0.14 Total: -6.57 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.11 Total: -45.30 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.85 Total: -35.47 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 23.27 SS G_CDS: -0.59 Total: 22.69 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.51 -9.42 -45.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360594219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.245 kcal (2) G-P(sol) polarization free energy of solvation -36.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds