Wall clock time and date at job start Fri Apr 10 2020 18:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50701 * 109.47097 * 120.00098 * 2 1 3 5 5 H 1.08001 * 120.00213 * 119.99401 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00020 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99825 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47088 * 60.00147 * 8 6 4 10 10 H 1.48496 * 109.47117 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47600 * 300.00319 * 8 6 4 12 12 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 13 13 C 1.46498 * 120.00313 * 300.00170 * 12 2 1 14 14 S 1.65601 * 119.99598 * 120.00216 * 12 2 1 15 15 O 1.42104 * 106.40162 * 203.53958 * 14 12 2 16 16 O 1.42098 * 106.40293 * 336.45996 * 14 12 2 17 17 N 1.65597 * 107.21677 * 89.99981 * 14 12 2 18 18 C 1.47123 * 121.04694 * 269.71224 * 17 14 12 19 19 C 1.52798 * 108.94193 * 232.14748 * 18 17 14 20 20 O 1.43093 * 109.42176 * 306.15371 * 19 18 17 21 21 C 1.42582 * 113.96033 * 59.97881 * 20 19 18 22 22 C 1.53374 * 113.66511 * 72.57794 * 21 20 19 23 23 C 1.53858 * 86.95895 * 89.64557 * 22 21 20 24 24 C 1.53348 * 113.71216 * 170.65096 * 21 20 19 25 25 C 1.47327 * 121.04429 * 90.00181 * 17 14 12 26 26 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 28 28 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 29 29 H 0.97003 * 119.99339 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.46845 * 89.99642 * 13 12 2 31 31 H 1.08995 * 109.46810 * 210.00303 * 13 12 2 32 32 H 1.09005 * 109.46841 * 330.00094 * 13 12 2 33 33 H 1.09003 * 109.60042 * 351.97093 * 18 17 14 34 34 H 1.09008 * 109.59451 * 112.43464 * 18 17 14 35 35 H 1.08999 * 109.56531 * 186.10088 * 19 18 17 36 36 H 1.09008 * 109.37500 * 66.08565 * 19 18 17 37 37 H 1.09000 * 113.63827 * 204.16063 * 22 21 20 38 38 H 1.09004 * 113.63701 * 335.13610 * 22 21 20 39 39 H 1.09002 * 113.60476 * 270.56430 * 23 22 21 40 40 H 1.08996 * 113.60292 * 139.69292 * 23 22 21 41 41 H 1.08999 * 113.62993 * 24.91519 * 24 21 20 42 42 H 1.08995 * 113.63384 * 155.87768 * 24 21 20 43 43 H 1.09002 * 109.74542 * 251.10136 * 25 17 14 44 44 H 1.08994 * 109.75055 * 11.77036 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3213 -1.1204 4.0079 9 1 3.8063 -1.1209 4.0082 10 1 1.8269 -0.4199 5.2204 11 1 1.8258 -2.5203 4.0078 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 16 2.9704 0.1142 -2.2862 15 8 2.8228 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1192 17 7 4.5437 -0.1043 -1.8179 18 6 5.1998 0.8389 -0.8989 19 6 6.5176 1.3006 -1.5194 20 8 7.3056 0.1581 -1.8677 21 6 6.6791 -0.7130 -2.8067 22 6 6.6260 -0.1471 -4.2312 23 6 7.9927 -0.8157 -4.4598 24 6 7.6076 -1.8068 -3.3479 25 6 5.3325 -1.2457 -2.3135 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.7090 1.1613 3.4844 30 1 0.7376 -2.1443 -1.9993 31 1 2.4629 -2.5818 -1.9863 32 1 1.5295 -2.5969 -0.4708 33 1 4.5524 1.7004 -0.7355 34 1 5.4001 0.3438 0.0514 35 1 7.0634 1.9141 -0.8026 36 1 6.3100 1.8860 -2.4152 37 1 5.8260 -0.5689 -4.8395 38 1 6.6603 0.9417 -4.2704 39 1 8.8388 -0.1784 -4.2027 40 1 8.0933 -1.2786 -5.4415 41 1 8.4309 -2.0524 -2.6771 42 1 7.0792 -2.6880 -3.7117 43 1 5.4926 -1.9608 -1.5065 44 1 4.8040 -1.7297 -3.1347 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367173763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:27 Heat of formation + Delta-G solvation = -87.146956 kcal Electronic energy + Delta-G solvation = -27295.197845 eV Core-core repulsion = 23568.684095 eV Total energy + Delta-G solvation = -3726.513750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38403 -36.86603 -36.38158 -36.16207 -35.31602 -34.58649 -32.63156 -30.04719 -29.10971 -26.66872 -25.91900 -25.50454 -25.20858 -23.74523 -21.79716 -20.73448 -19.17777 -18.47405 -17.36490 -16.93461 -16.56631 -16.34307 -15.78134 -15.50928 -14.94834 -14.74446 -14.57390 -14.23172 -13.89955 -13.50434 -13.31675 -13.19594 -12.75299 -12.47501 -12.17263 -12.05366 -11.85128 -11.82343 -11.55822 -11.43413 -11.28676 -11.24557 -11.13803 -11.00314 -10.89630 -10.86092 -10.84315 -10.47543 -10.25660 -10.13135 -10.07780 -9.89513 -9.33514 -8.54667 -8.51040 -7.97927 -6.12607 -4.21352 1.13201 3.23430 3.29171 3.29538 3.35778 3.58591 4.01733 4.32605 4.44084 4.52564 4.67887 4.76135 4.87600 5.01518 5.13248 5.17892 5.34187 5.39676 5.50256 5.57988 5.59381 5.65746 5.66684 5.73191 5.81296 5.94398 5.97599 6.13935 6.17895 6.20153 6.25389 6.37405 6.58889 6.71058 6.84396 6.88149 7.08243 7.23284 7.45365 7.58680 7.74189 8.01352 8.22416 8.81536 9.45159 10.92292 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.005171 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.579466 B = 5413.957496 C = 6136.080198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.268 3.732 3 H 0.057 0.943 4 C -0.526 4.526 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.108 3.892 14 S 2.780 3.220 15 O -0.995 6.995 16 O -0.978 6.978 17 N -1.007 6.007 18 C 0.090 3.910 19 C 0.051 3.949 20 O -0.354 6.354 21 C 0.084 3.916 22 C -0.167 4.167 23 C -0.133 4.133 24 C -0.122 4.122 25 C 0.108 3.892 26 H 0.032 0.968 27 H 0.093 0.907 28 H 0.011 0.989 29 H 0.264 0.736 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.787 -3.677 -9.561 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.075 0.925 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.791 3.209 15 O -0.979 6.979 16 O -0.962 6.962 17 N -0.845 5.845 18 C -0.036 4.036 19 C -0.027 4.027 20 O -0.272 6.272 21 C 0.042 3.958 22 C -0.204 4.204 23 C -0.170 4.170 24 C -0.160 4.160 25 C -0.018 4.018 26 H 0.051 0.949 27 H 0.111 0.889 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.554 -3.078 -10.092 14.923 hybrid contribution 0.081 -0.606 1.298 1.435 sum 10.635 -3.684 -8.794 14.283 Atomic orbital electron populations 1.22055 0.97944 0.99677 1.00742 1.18728 0.91901 0.92632 0.80245 0.92512 1.21323 1.31959 1.13153 0.90123 0.92007 1.24914 0.94914 0.94953 0.98952 1.69869 1.36100 1.22545 1.23947 0.86594 0.79168 0.79690 0.82120 1.20256 1.21232 1.20290 1.57781 1.64162 1.21412 1.39856 1.21173 0.98848 0.82035 1.01838 1.01907 0.72289 0.73490 0.73215 1.93518 1.85864 1.76361 1.42187 1.93565 1.83603 1.32256 1.86822 1.58343 1.30084 1.35224 1.60856 1.21912 0.94874 0.93755 0.93089 1.22881 0.92289 0.87724 0.99795 1.87869 1.42336 1.35597 1.61409 1.22484 0.92565 0.92314 0.88419 1.23532 0.98466 1.01390 0.97048 1.22779 0.97360 0.98303 0.98591 1.22918 0.99212 0.96242 0.97619 1.21922 0.91616 0.88481 0.99821 0.94862 0.88869 0.96943 0.92556 0.93878 0.93375 0.90168 0.87842 0.90097 0.87619 0.92799 0.88849 0.91059 0.89919 0.91303 0.90269 0.88559 0.90823 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.97 37.16 0.33 -3.10 16 2 C 0.27 6.47 2.62 -69.08 -0.18 6.29 16 3 H 0.06 1.51 6.91 -51.93 -0.36 1.16 16 4 C -0.53 -13.27 7.99 -34.44 -0.28 -13.55 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -23.97 11.32 55.43 0.63 -23.34 16 8 Si 0.90 20.16 29.54 -169.99 -5.02 15.13 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.99 -20.55 3.12 -115.85 -0.36 -20.92 16 13 C 0.11 1.92 9.28 59.85 0.56 2.47 16 14 S 2.78 55.01 6.12 -107.50 -0.66 54.35 16 15 O -1.00 -20.04 15.84 -57.17 -0.91 -20.94 16 16 O -0.98 -22.13 15.32 -57.17 -0.88 -23.01 16 17 N -1.01 -16.83 3.41 -113.41 -0.39 -17.22 16 18 C 0.09 1.42 6.63 -3.81 -0.03 1.39 16 19 C 0.05 0.68 6.86 37.05 0.25 0.93 16 20 O -0.35 -4.92 10.44 -35.23 -0.37 -5.29 16 21 C 0.08 1.07 1.12 -90.26 -0.10 0.97 16 22 C -0.17 -1.99 7.23 -26.09 -0.19 -2.18 16 23 C -0.13 -1.30 8.03 -25.84 -0.21 -1.50 16 24 C -0.12 -1.23 7.47 -26.11 -0.20 -1.43 16 25 C 0.11 1.52 5.86 -3.60 -0.02 1.50 16 26 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 27 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 32 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 33 H 0.10 1.74 6.95 -51.93 -0.36 1.38 16 34 H 0.08 1.30 8.14 -51.92 -0.42 0.87 16 35 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.70 7.11 -51.92 -0.37 0.33 16 37 H 0.09 1.12 7.95 -51.93 -0.41 0.71 16 38 H 0.07 0.87 7.18 -51.93 -0.37 0.50 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.10 1.33 6.75 -51.93 -0.35 0.98 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -30.17 354.07 -9.79 -39.95 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.03 Total: 2.52 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -0.15 Total: -6.59 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -0.12 Total: -61.47 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -2.15 Total: -49.24 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 55.01 SS G_CDS: -0.66 Total: 54.35 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.17 -9.79 -39.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367173763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.193 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds