Wall clock time and date at job start Fri Apr 10 2020 18:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35718 * 116.99965 * 2 1 4 4 C 1.38989 * 119.90929 * 179.97438 * 3 2 1 5 5 C 1.37702 * 120.08563 * 179.97438 * 4 3 2 6 6 C 1.39731 * 119.91147 * 0.02562 * 5 4 3 7 7 C 1.47608 * 120.08748 * 180.02562 * 6 5 4 8 8 O 1.21590 * 119.99850 * 335.46360 * 7 6 5 9 9 N 1.34773 * 119.99997 * 155.45829 * 7 6 5 10 10 C 1.47465 * 125.62944 * 354.20685 * 9 7 6 11 11 C 1.54910 * 104.81370 * 204.06976 * 10 9 7 12 12 C 1.55159 * 101.61268 * 323.04292 * 11 10 9 13 13 C 1.47025 * 125.64919 * 174.20526 * 9 7 6 14 14 H 1.08993 * 110.01327 * 59.48343 * 13 9 7 15 15 C 1.50703 * 109.88092 * 298.39433 * 13 9 7 16 16 O 1.21290 * 120.00052 * 0.73669 * 15 13 9 17 17 N 1.34772 * 119.99776 * 180.74067 * 15 13 9 18 18 C 1.37102 * 119.99886 * 180.02562 * 17 15 13 19 19 H 1.07996 * 119.99868 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00150 * 179.97438 * 18 17 15 21 21 N 1.31418 * 119.99870 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00187 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46761 * 89.99872 * 22 20 18 24 24 H 1.48496 * 109.47382 * 209.99965 * 22 20 18 25 25 H 1.48503 * 109.47174 * 330.00235 * 22 20 18 26 26 C 1.39726 * 119.82514 * 0.28436 * 6 5 4 27 27 C 1.37709 * 119.91210 * 359.39274 * 26 6 5 28 28 H 1.09005 * 109.47117 * 59.99910 * 1 2 3 29 29 H 1.08996 * 109.47557 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47369 * 300.00602 * 1 2 3 31 31 H 1.07998 * 119.96012 * 359.97438 * 4 3 2 32 32 H 1.08005 * 120.04445 * 179.97438 * 5 4 3 33 33 H 1.09001 * 110.35158 * 85.25341 * 10 9 7 34 34 H 1.09005 * 110.40292 * 322.91402 * 10 9 7 35 35 H 1.09001 * 111.00898 * 204.94894 * 11 10 9 36 36 H 1.08999 * 111.00364 * 81.13177 * 11 10 9 37 37 H 1.09006 * 110.72087 * 153.85099 * 12 11 10 38 38 H 1.09001 * 110.71930 * 276.93912 * 12 11 10 39 39 H 0.97000 * 120.00325 * 359.97438 * 17 15 13 40 40 H 0.96995 * 119.99466 * 180.02562 * 21 20 18 41 41 H 1.08006 * 120.04670 * 179.72425 * 26 6 5 42 42 H 1.07989 * 119.95606 * 180.34618 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4332 1.2798 0.0005 5 6 4.0622 2.5048 0.0000 6 6 3.3029 3.6779 -0.0005 7 6 3.9730 4.9931 -0.0017 8 8 5.1027 5.1001 0.4351 9 7 3.3328 6.0751 -0.4870 10 6 2.0173 6.0679 -1.1532 11 6 2.0129 7.3414 -2.0352 12 6 2.7782 8.3473 -1.1352 13 6 3.8302 7.4579 -0.4398 14 1 4.7823 7.5299 -0.9654 15 6 4.0020 7.8921 0.9931 16 8 3.7493 7.1213 1.8948 17 7 4.4364 9.1369 1.2725 18 6 4.5932 9.5318 2.5760 19 1 4.3682 8.8454 3.3789 20 6 5.0415 10.8150 2.8642 21 7 5.3158 11.6500 1.8871 22 14 5.2545 11.3532 4.6402 23 1 6.6340 11.0380 5.0909 24 1 5.0214 12.8160 4.7455 25 1 4.2775 10.6334 5.4961 26 6 1.9077 3.6026 0.0055 27 6 1.2862 2.3737 -0.0007 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.0194 0.3727 0.0014 32 1 5.1409 2.5589 0.0008 33 1 1.2177 6.1158 -0.4140 34 1 1.9098 5.1773 -1.7724 35 1 0.9950 7.6823 -2.2243 36 1 2.5457 7.1706 -2.9707 37 1 3.2611 9.1154 -1.7393 38 1 2.1071 8.7987 -0.4044 39 1 4.6388 9.7533 0.5514 40 1 5.6291 12.5456 2.0883 41 1 1.3174 4.5071 0.0096 42 1 0.2080 2.3148 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367193924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:34 Heat of formation + Delta-G solvation = -65.441454 kcal Electronic energy + Delta-G solvation = -26589.241654 eV Core-core repulsion = 22728.225174 eV Total energy + Delta-G solvation = -3861.016480 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.62048 -39.81500 -38.12721 -36.90963 -36.57462 -33.86412 -32.15337 -31.19170 -30.93766 -30.22362 -29.08533 -27.57179 -25.10542 -24.28915 -22.76499 -22.30783 -21.31631 -20.27179 -18.72633 -18.24690 -17.81849 -17.10752 -16.73476 -16.36451 -16.01299 -15.50761 -14.81165 -14.70709 -14.34941 -14.15344 -14.06032 -13.89157 -13.56286 -13.35561 -13.17220 -12.85883 -12.80379 -12.61143 -12.39113 -12.09887 -11.82812 -11.50895 -11.32295 -11.28594 -11.16841 -11.01390 -10.79969 -10.66240 -10.35924 -10.18057 -9.51819 -9.45430 -9.16844 -8.75519 -8.35336 -7.95972 -7.91424 -6.37293 -3.77484 0.96424 1.23134 2.98664 3.05188 3.21191 3.25842 3.29524 3.36133 3.86740 3.91454 4.22374 4.51011 4.58699 4.64039 4.69757 4.81878 4.84399 4.96065 4.98975 5.07369 5.14470 5.21831 5.27756 5.33152 5.44347 5.49790 5.53457 5.68228 5.81484 5.85678 5.96631 6.01954 6.05995 6.11647 6.23174 6.36456 6.39658 6.52427 6.67698 7.12975 7.59818 7.86562 8.09675 8.58156 8.68597 9.22697 9.58194 10.10110 10.80453 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020021 B = 0.003096 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.191009 B = 9041.563726 C = 9626.102577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.143 3.857 4 C -0.160 4.160 5 C -0.025 4.025 6 C -0.153 4.153 7 C 0.584 3.416 8 O -0.520 6.520 9 N -0.594 5.594 10 C 0.097 3.903 11 C -0.132 4.132 12 C -0.123 4.123 13 C 0.127 3.873 14 H 0.088 0.912 15 C 0.439 3.561 16 O -0.577 6.577 17 N -0.561 5.561 18 C -0.295 4.295 19 H 0.101 0.899 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.055 4.055 27 C -0.217 4.217 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.142 0.858 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.640 -15.818 -11.508 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.097 3.903 4 C -0.179 4.179 5 C -0.044 4.044 6 C -0.157 4.157 7 C 0.373 3.627 8 O -0.396 6.396 9 N -0.328 5.328 10 C -0.026 4.026 11 C -0.170 4.170 12 C -0.161 4.161 13 C 0.019 3.981 14 H 0.106 0.894 15 C 0.223 3.777 16 O -0.460 6.460 17 N -0.197 5.197 18 C -0.425 4.425 19 H 0.119 0.881 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.195 1.195 26 C -0.073 4.073 27 C -0.236 4.236 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.154 0.846 32 H 0.159 0.841 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.159 0.841 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.002 -16.351 -10.601 22.378 hybrid contribution -0.067 0.933 0.576 1.099 sum -11.069 -15.417 -10.025 21.465 Atomic orbital electron populations 1.23089 0.78240 1.03978 1.01613 1.86029 1.21560 1.27077 1.88277 1.19269 0.92410 0.84094 0.94544 1.20349 0.91206 0.98563 1.07787 1.21063 1.00609 0.89945 0.92781 1.19864 0.93736 0.93584 1.08476 1.17615 0.85282 0.82606 0.77177 1.90796 1.18362 1.85097 1.45317 1.47891 1.20100 1.05940 1.58879 1.22590 0.85870 0.99024 0.95148 1.22814 1.01399 0.94665 0.98161 1.22666 0.97479 0.97211 0.98763 1.21401 0.98583 0.81604 0.96468 0.89378 1.19971 0.84452 0.83573 0.89699 1.90531 1.55351 1.53038 1.47090 1.41784 1.58013 1.11184 1.08747 1.19688 1.41376 0.97461 0.83985 0.88083 1.25234 0.97234 0.95777 0.99668 1.69612 1.45740 1.07270 1.31795 0.85871 0.78857 0.77487 0.82157 1.20405 1.20939 1.19490 1.21629 0.93782 0.98098 0.93774 1.21159 1.00112 0.92011 1.10335 0.92470 0.88221 0.92416 0.84649 0.84133 0.91201 0.90263 0.89710 0.90417 0.89299 0.89786 0.77474 0.91933 0.84101 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.25 10.48 -18.86 -0.20 -3.45 16 3 C 0.14 1.65 6.70 -39.02 -0.26 1.39 16 4 C -0.16 -1.94 9.97 -39.50 -0.39 -2.33 16 5 C -0.03 -0.35 9.58 -39.22 -0.38 -0.73 16 6 C -0.15 -2.42 5.67 -104.96 -0.59 -3.02 16 7 C 0.58 11.52 6.66 -12.44 -0.08 11.44 16 8 O -0.52 -12.57 16.18 -3.25 -0.05 -12.62 16 9 N -0.59 -10.44 2.84 -165.48 -0.47 -10.91 16 10 C 0.10 1.18 4.99 -2.51 -0.01 1.17 16 11 C -0.13 -1.38 7.08 -24.58 -0.17 -1.55 16 12 C -0.12 -1.73 6.37 -24.90 -0.16 -1.89 16 13 C 0.13 2.39 3.23 -68.10 -0.22 2.17 16 14 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 15 C 0.44 10.94 6.68 -10.99 -0.07 10.87 16 16 O -0.58 -16.72 14.78 -2.99 -0.04 -16.76 16 17 N -0.56 -14.67 5.21 -10.96 -0.06 -14.73 16 18 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 19 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.89 13.05 55.50 0.72 -24.16 16 22 Si 0.93 21.65 29.55 -169.99 -5.02 16.63 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.05 -0.71 8.06 -39.22 -0.32 -1.02 16 27 C -0.22 -2.38 9.01 -39.49 -0.36 -2.73 16 28 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 31 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.14 1.94 7.84 -52.48 -0.41 1.53 16 33 H 0.07 0.83 6.81 -51.93 -0.35 0.48 16 34 H 0.08 0.80 6.85 -51.93 -0.36 0.44 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.30 7.85 -51.93 -0.41 0.89 16 39 H 0.39 9.69 7.86 -40.82 -0.32 9.37 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.14 1.67 4.61 -52.48 -0.24 1.43 16 42 H 0.13 1.06 6.28 -52.49 -0.33 0.73 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -37.02 350.07 -7.38 -44.40 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.26 Total: 9.55 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -2.27 Total: 6.78 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.20 Total: -49.80 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.29 Total: -32.83 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.02 -7.38 -44.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367193924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.043 kcal (2) G-P(sol) polarization free energy of solvation -37.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds