Wall clock time and date at job start Fri Apr 10 2020 18:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35718 * 116.99965 * 2 1 4 4 C 1.38989 * 119.90929 * 179.97438 * 3 2 1 5 5 C 1.37702 * 120.08563 * 179.97438 * 4 3 2 6 6 C 1.39731 * 119.91147 * 0.02562 * 5 4 3 7 7 C 1.47608 * 120.08748 * 180.02562 * 6 5 4 8 8 O 1.21590 * 119.99850 * 335.46360 * 7 6 5 9 9 N 1.34773 * 119.99997 * 155.45829 * 7 6 5 10 10 C 1.47465 * 125.62944 * 354.20685 * 9 7 6 11 11 C 1.54910 * 104.81370 * 204.06976 * 10 9 7 12 12 C 1.55159 * 101.61268 * 323.04292 * 11 10 9 13 13 C 1.47025 * 125.64919 * 174.20526 * 9 7 6 14 14 H 1.08993 * 110.01327 * 59.48343 * 13 9 7 15 15 C 1.50703 * 109.88092 * 298.39433 * 13 9 7 16 16 O 1.21290 * 120.00052 * 0.73669 * 15 13 9 17 17 N 1.34772 * 119.99776 * 180.74067 * 15 13 9 18 18 C 1.37102 * 119.99886 * 180.02562 * 17 15 13 19 19 H 1.07996 * 119.99868 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00150 * 179.97438 * 18 17 15 21 21 N 1.31418 * 119.99870 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00187 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46761 * 89.99872 * 22 20 18 24 24 H 1.48496 * 109.47382 * 209.99965 * 22 20 18 25 25 H 1.48503 * 109.47174 * 330.00235 * 22 20 18 26 26 C 1.39726 * 119.82514 * 0.28436 * 6 5 4 27 27 C 1.37709 * 119.91210 * 359.39274 * 26 6 5 28 28 H 1.09005 * 109.47117 * 59.99910 * 1 2 3 29 29 H 1.08996 * 109.47557 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47369 * 300.00602 * 1 2 3 31 31 H 1.07998 * 119.96012 * 359.97438 * 4 3 2 32 32 H 1.08005 * 120.04445 * 179.97438 * 5 4 3 33 33 H 1.09001 * 110.35158 * 85.25341 * 10 9 7 34 34 H 1.09005 * 110.40292 * 322.91402 * 10 9 7 35 35 H 1.09001 * 111.00898 * 204.94894 * 11 10 9 36 36 H 1.08999 * 111.00364 * 81.13177 * 11 10 9 37 37 H 1.09006 * 110.72087 * 153.85099 * 12 11 10 38 38 H 1.09001 * 110.71930 * 276.93912 * 12 11 10 39 39 H 0.97000 * 120.00325 * 359.97438 * 17 15 13 40 40 H 0.96995 * 119.99466 * 180.02562 * 21 20 18 41 41 H 1.08006 * 120.04670 * 179.72425 * 26 6 5 42 42 H 1.07989 * 119.95606 * 180.34618 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4332 1.2798 0.0005 5 6 4.0622 2.5048 0.0000 6 6 3.3029 3.6779 -0.0005 7 6 3.9730 4.9931 -0.0017 8 8 5.1027 5.1001 0.4351 9 7 3.3328 6.0751 -0.4870 10 6 2.0173 6.0679 -1.1532 11 6 2.0129 7.3414 -2.0352 12 6 2.7782 8.3473 -1.1352 13 6 3.8302 7.4579 -0.4398 14 1 4.7823 7.5299 -0.9654 15 6 4.0020 7.8921 0.9931 16 8 3.7493 7.1213 1.8948 17 7 4.4364 9.1369 1.2725 18 6 4.5932 9.5318 2.5760 19 1 4.3682 8.8454 3.3789 20 6 5.0415 10.8150 2.8642 21 7 5.3158 11.6500 1.8871 22 14 5.2545 11.3532 4.6402 23 1 6.6340 11.0380 5.0909 24 1 5.0214 12.8160 4.7455 25 1 4.2775 10.6334 5.4961 26 6 1.9077 3.6026 0.0055 27 6 1.2862 2.3737 -0.0007 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.0194 0.3727 0.0014 32 1 5.1409 2.5589 0.0008 33 1 1.2177 6.1158 -0.4140 34 1 1.9098 5.1773 -1.7724 35 1 0.9950 7.6823 -2.2243 36 1 2.5457 7.1706 -2.9707 37 1 3.2611 9.1154 -1.7393 38 1 2.1071 8.7987 -0.4044 39 1 4.6388 9.7533 0.5514 40 1 5.6291 12.5456 2.0883 41 1 1.3174 4.5071 0.0096 42 1 0.2080 2.3148 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367193924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:33 Heat of formation + Delta-G solvation = -92.044428 kcal Electronic energy + Delta-G solvation = -26590.395246 eV Core-core repulsion = 22728.225174 eV Total energy + Delta-G solvation = -3862.170071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82585 -40.93736 -39.71075 -38.21602 -37.90520 -35.99217 -33.59994 -32.95304 -32.05097 -31.26386 -30.35986 -28.22957 -26.99868 -25.61815 -23.74365 -23.47826 -22.51090 -21.64175 -20.46745 -19.79527 -19.05331 -18.44424 -18.24197 -17.39932 -16.91887 -16.69686 -16.67231 -15.87607 -15.80336 -15.69322 -15.46172 -15.32798 -14.83298 -14.50115 -14.42598 -14.15245 -13.87933 -13.76475 -13.59635 -13.49553 -13.07863 -12.99171 -12.80954 -12.58564 -12.46927 -12.20565 -12.14275 -11.99714 -11.79903 -11.65083 -11.54181 -11.00799 -10.52727 -10.12732 -10.04799 -9.65430 -9.27061 -8.49748 -5.98874 -0.10145 0.27799 1.34042 1.37445 1.50260 1.75681 1.97375 2.00400 2.27589 2.28790 2.74583 3.11850 3.18206 3.50085 3.57589 3.70344 3.83889 3.86614 4.04996 4.16500 4.21650 4.28954 4.36164 4.44222 4.45214 4.52825 4.54196 4.71621 4.77814 4.85123 4.89222 4.96123 5.05631 5.08699 5.18725 5.22118 5.32814 5.36467 5.40088 5.58333 5.95086 6.33786 6.51823 6.56308 7.07482 7.18679 7.50411 8.06893 8.67437 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020021 B = 0.003096 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.191009 B = 9041.563726 C = 9626.102577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.326 6.326 3 C 0.150 3.850 4 C -0.163 4.163 5 C -0.036 4.036 6 C -0.183 4.183 7 C 0.571 3.429 8 O -0.587 6.587 9 N -0.597 5.597 10 C 0.086 3.914 11 C -0.114 4.114 12 C -0.117 4.117 13 C 0.127 3.873 14 H 0.085 0.915 15 C 0.432 3.568 16 O -0.624 6.624 17 N -0.566 5.566 18 C -0.335 4.335 19 H 0.071 0.929 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 0.992 3.008 23 H -0.274 1.274 24 H -0.263 1.263 25 H -0.274 1.274 26 C -0.052 4.052 27 C -0.207 4.207 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.153 0.847 32 H 0.129 0.871 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.397 0.603 40 H 0.279 0.721 41 H 0.152 0.848 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.456 -16.372 -12.989 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.103 3.897 4 C -0.182 4.182 5 C -0.055 4.055 6 C -0.186 4.186 7 C 0.363 3.637 8 O -0.468 6.468 9 N -0.329 5.329 10 C -0.035 4.035 11 C -0.151 4.151 12 C -0.155 4.155 13 C 0.019 3.981 14 H 0.103 0.897 15 C 0.219 3.781 16 O -0.511 6.511 17 N -0.203 5.203 18 C -0.465 4.465 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.557 5.557 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.187 1.187 25 H -0.199 1.199 26 C -0.070 4.070 27 C -0.226 4.226 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.084 0.916 31 H 0.170 0.830 32 H 0.146 0.854 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.139 0.861 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.087 0.913 39 H 0.231 0.769 40 H 0.089 0.911 41 H 0.170 0.830 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -13.872 -16.887 -12.143 25.001 hybrid contribution 0.740 0.986 1.029 1.606 sum -13.132 -15.900 -11.115 23.427 Atomic orbital electron populations 1.23466 0.75870 1.05989 1.02780 1.86038 1.23977 1.26196 1.87657 1.19384 0.92300 0.85016 0.92954 1.20492 0.92148 0.98178 1.07333 1.21042 1.00258 0.90592 0.93632 1.19724 0.95145 0.91799 1.11973 1.18418 0.84840 0.84393 0.76095 1.90734 1.21281 1.86354 1.48425 1.48118 1.21795 1.04723 1.58235 1.22999 0.83206 1.01553 0.95724 1.22867 1.03068 0.91749 0.97417 1.22678 0.96257 0.97663 0.98945 1.21423 1.00636 0.83670 0.92350 0.89741 1.21103 0.82438 0.82494 0.92090 1.90485 1.56975 1.54117 1.49504 1.41813 1.58427 1.11952 1.08114 1.19590 1.44154 0.98104 0.84621 0.91107 1.26012 0.95989 0.95074 1.03883 1.69660 1.44993 1.07635 1.33398 0.84956 0.78587 0.77882 0.77040 1.20012 1.18731 1.19919 1.21734 0.92381 0.99555 0.93317 1.21463 1.01801 0.90694 1.08603 0.90789 0.86039 0.91630 0.82957 0.85355 0.90576 0.87429 0.86073 0.88423 0.87262 0.91281 0.76857 0.91114 0.83039 0.81462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -5.70 10.48 -90.39 -0.95 -6.64 16 3 C 0.15 3.12 6.70 22.63 0.15 3.28 16 4 C -0.16 -3.83 9.97 22.32 0.22 -3.60 16 5 C -0.04 -1.07 9.58 22.50 0.22 -0.85 16 6 C -0.18 -5.94 5.67 -20.08 -0.11 -6.05 16 7 C 0.57 23.78 6.66 86.72 0.58 24.35 16 8 O -0.59 -30.78 16.18 4.16 0.07 -30.71 16 9 N -0.60 -21.32 2.84 -795.72 -2.26 -23.59 16 10 C 0.09 1.92 4.99 86.85 0.43 2.36 16 11 C -0.11 -1.96 7.08 31.99 0.23 -1.73 16 12 C -0.12 -3.15 6.37 31.78 0.20 -2.95 16 13 C 0.13 4.93 3.23 44.59 0.14 5.08 16 14 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 15 C 0.43 22.74 6.68 87.66 0.59 23.32 16 16 O -0.62 -38.54 14.78 5.10 0.08 -38.46 16 17 N -0.57 -31.05 5.21 -306.99 -1.60 -32.65 16 18 C -0.34 -20.20 9.68 84.04 0.81 -19.38 16 19 H 0.07 4.62 7.16 -2.91 -0.02 4.60 16 20 C -0.01 -0.53 5.50 84.92 0.47 -0.06 16 21 N -0.92 -50.61 13.05 21.66 0.28 -50.32 16 22 Si 0.99 44.76 29.55 68.60 2.03 46.79 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 C -0.05 -1.26 8.06 22.50 0.18 -1.08 16 27 C -0.21 -3.92 9.01 22.33 0.20 -3.71 16 28 H 0.07 0.42 7.65 -2.38 -0.02 0.40 16 29 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.49 7.65 -2.39 -0.02 0.47 16 31 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 32 H 0.13 3.94 7.84 -2.91 -0.02 3.92 16 33 H 0.08 1.63 6.81 -2.39 -0.02 1.62 16 34 H 0.11 1.83 6.85 -2.38 -0.02 1.81 16 35 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 38 H 0.07 2.08 7.85 -2.39 -0.02 2.07 16 39 H 0.40 20.39 7.86 -92.71 -0.73 19.66 16 40 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.15 3.29 4.61 -2.91 -0.01 3.28 16 42 H 0.17 1.91 6.28 -2.92 -0.02 1.89 16 Total: -1.00 -87.23 350.07 3.40 -83.83 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.34 Total: 31.58 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 5.42 Total: 20.18 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -3.58 Total: -106.56 kcal Atomic # 8 Polarization: -75.02 SS G_CDS: -0.80 Total: -75.82 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -87.23 3.40 -83.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367193924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.215 kcal (2) G-P(sol) polarization free energy of solvation -87.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds