Wall clock time and date at job start Fri Apr 10 2020 18:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46772 * 2 1 4 4 C 1.50699 * 109.47363 * 120.00246 * 2 1 3 5 5 H 1.07992 * 119.99924 * 120.00084 * 4 2 1 6 6 C 1.37885 * 119.99658 * 299.99999 * 4 2 1 7 7 N 1.31509 * 120.00118 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99790 * 179.97438 * 6 4 2 9 9 H 1.48510 * 109.47079 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46971 * 119.99680 * 8 6 4 11 11 H 1.48495 * 109.47065 * 240.00079 * 8 6 4 12 12 N 1.46502 * 109.46991 * 240.00051 * 2 1 3 13 13 C 1.46494 * 120.00401 * 299.99770 * 12 2 1 14 14 S 1.65610 * 119.99691 * 119.99786 * 12 2 1 15 15 O 1.42097 * 106.40309 * 336.45908 * 14 12 2 16 16 O 1.42105 * 106.39942 * 203.53838 * 14 12 2 17 17 N 1.65599 * 107.21660 * 90.00058 * 14 12 2 18 18 C 1.47580 * 125.67711 * 269.97509 * 17 14 12 19 19 C 1.55228 * 105.03729 * 203.84360 * 18 17 14 20 20 C 1.53421 * 101.37969 * 324.74669 * 19 18 17 21 21 C 1.53547 * 111.90626 * 271.41782 * 20 19 18 22 22 C 1.54697 * 102.02480 * 207.12499 * 21 20 19 23 23 O 1.43385 * 107.65077 * 19.85081 * 22 21 20 24 24 C 1.44009 * 110.07397 * 1.46769 * 23 22 21 25 25 C 1.47471 * 125.67742 * 89.99555 * 17 14 12 26 26 H 1.09001 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46937 * 299.99387 * 1 2 3 28 28 H 1.09003 * 109.47206 * 59.99899 * 1 2 3 29 29 H 0.96994 * 120.00159 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47247 * 270.00599 * 13 12 2 31 31 H 1.08997 * 109.46939 * 30.00075 * 13 12 2 32 32 H 1.09003 * 109.47357 * 150.00055 * 13 12 2 33 33 H 1.08999 * 110.32865 * 322.73290 * 18 17 14 34 34 H 1.09001 * 110.33273 * 84.94981 * 18 17 14 35 35 H 1.09005 * 111.04322 * 206.72221 * 19 18 17 36 36 H 1.09000 * 111.04445 * 82.77256 * 19 18 17 37 37 H 1.09007 * 110.91714 * 88.94562 * 21 20 19 38 38 H 1.08999 * 110.92741 * 325.30794 * 21 20 19 39 39 H 1.09001 * 109.82484 * 260.32221 * 22 21 20 40 40 H 1.09001 * 109.89105 * 139.41715 * 22 21 20 41 41 H 1.08997 * 110.34388 * 96.37442 * 24 23 22 42 42 H 1.09000 * 110.33941 * 218.62399 * 24 23 22 43 43 H 1.09008 * 109.99600 * 58.37446 * 25 17 14 44 44 H 1.09000 * 110.00350 * 297.02601 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1466 -2.2871 3.6037 10 1 3.1467 -0.1875 4.8164 11 1 1.1662 -1.5867 4.8160 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 2.6903 1.4974 -2.1193 16 8 2.8227 -0.5645 -3.5260 17 7 4.5437 -0.1041 -1.8181 18 6 5.2981 0.7716 -0.9005 19 6 6.7908 0.5367 -1.2558 20 6 6.7866 -0.9563 -1.6090 21 6 7.0235 -1.8377 -0.3742 22 6 7.6658 -3.0995 -0.9974 23 8 8.1782 -2.7352 -2.2861 24 6 7.9497 -1.3346 -2.5310 25 6 5.4243 -1.2057 -2.2491 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.7081 1.1607 3.4844 30 1 2.4157 -2.7376 -0.9717 31 1 0.6905 -2.3002 -0.9847 32 1 1.6238 -2.2852 -2.5003 33 1 5.0291 1.8149 -1.0659 34 1 5.1065 0.4900 0.1350 35 1 7.4332 0.7341 -0.3975 36 1 7.0889 1.1408 -2.1127 37 1 6.0810 -2.0823 0.1159 38 1 7.7092 -1.3556 0.3226 39 1 6.9144 -3.8816 -1.1061 40 1 8.4786 -3.4536 -0.3632 41 1 8.8379 -0.7558 -2.2775 42 1 7.6753 -1.1721 -3.5733 43 1 5.5171 -1.2056 -3.3352 44 1 5.0216 -2.1598 -1.9089 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374586639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:45 Heat of formation + Delta-G solvation = -135.769630 kcal Electronic energy + Delta-G solvation = -27153.208911 eV Core-core repulsion = 23424.586724 eV Total energy + Delta-G solvation = -3728.622187 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36696 -38.41123 -38.11046 -37.91398 -36.96572 -34.52308 -33.20185 -30.97384 -30.85332 -30.18738 -27.35139 -27.01780 -26.42092 -23.53368 -23.35249 -22.52388 -20.63488 -19.99953 -18.86749 -18.45930 -18.35148 -17.30436 -17.01646 -16.65633 -16.53786 -16.23350 -15.73280 -15.30081 -14.95683 -14.91491 -14.71369 -14.47707 -14.01623 -13.71936 -13.59791 -13.51774 -13.30289 -13.27475 -13.23764 -13.19412 -12.95118 -12.80071 -12.65070 -12.51327 -12.39725 -12.25201 -12.15454 -11.90256 -11.78710 -11.66040 -11.49105 -11.17165 -10.51395 -10.43759 -10.01457 -9.67071 -8.09437 -6.24350 -0.40529 1.43340 1.46679 1.56220 1.94025 2.44507 2.52487 2.87351 3.18680 3.19218 3.40136 3.45046 3.73221 4.05963 4.10408 4.14119 4.25719 4.32174 4.45323 4.59212 4.67484 4.68359 4.72850 4.76238 4.81442 4.86120 4.92929 4.94073 4.95855 4.99023 5.06128 5.09511 5.12694 5.14846 5.20468 5.27637 5.37079 5.60665 5.74109 5.84750 6.05138 6.08608 6.28378 6.84811 7.45493 8.95417 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.005914 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.864143 B = 4733.229690 C = 5949.408178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.274 3.726 3 H 0.024 0.976 4 C -0.524 4.524 5 H 0.066 0.934 6 C 0.018 3.982 7 N -0.918 5.918 8 Si 0.957 3.043 9 H -0.263 1.263 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.997 5.997 13 C 0.096 3.904 14 S 2.807 3.193 15 O -1.011 7.011 16 O -1.004 7.004 17 N -1.017 6.017 18 C 0.111 3.889 19 C -0.099 4.099 20 C -0.100 4.100 21 C -0.140 4.140 22 C 0.050 3.950 23 O -0.406 6.406 24 C 0.069 3.931 25 C 0.134 3.866 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.018 0.982 29 H 0.263 0.737 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.878 -5.302 -5.592 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.563 4.563 5 H 0.084 0.916 6 C -0.182 4.182 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.187 1.187 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.838 5.838 13 C -0.049 4.049 14 S 2.818 3.182 15 O -0.996 6.996 16 O -0.988 6.988 17 N -0.858 5.858 18 C -0.014 4.014 19 C -0.138 4.138 20 C -0.102 4.102 21 C -0.177 4.177 22 C -0.026 4.026 23 O -0.326 6.326 24 C -0.007 4.007 25 C 0.009 3.991 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.129 0.871 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.481 -4.836 -6.403 15.689 hybrid contribution -0.433 -0.223 1.460 1.539 sum 13.048 -5.059 -4.942 14.842 Atomic orbital electron populations 1.21965 0.97994 1.00086 0.99989 1.18405 0.91873 0.91319 0.81475 0.95806 1.21583 1.31416 1.12852 0.90492 0.91569 1.25666 0.95203 0.95562 1.01751 1.70017 1.37430 1.24050 1.24253 0.85521 0.78049 0.78711 0.79394 1.18700 1.20913 1.21143 1.57680 1.64940 1.22480 1.38742 1.21410 1.02192 0.80432 1.00883 1.00830 0.72228 0.72418 0.72714 1.93524 1.84428 1.34350 1.87258 1.93500 1.86370 1.76379 1.42589 1.59031 1.28262 1.37325 1.61221 1.22216 0.92398 0.93698 0.93121 1.22552 0.94086 0.93380 1.03786 1.22030 0.94292 0.97400 0.96486 1.23001 1.02398 0.95335 0.96990 1.23289 0.98353 0.96987 0.83984 1.88443 1.81888 1.26066 1.36163 1.23280 0.96178 0.81724 0.99507 1.21615 0.89293 0.88898 0.99243 0.93603 0.91043 0.96313 0.92745 0.92650 0.90620 0.90740 0.91175 0.91807 0.87126 0.88782 0.90495 0.88252 0.91462 0.89965 0.89394 0.88984 0.90737 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.75 8.95 71.98 0.64 -6.11 16 2 C 0.27 13.38 2.62 44.24 0.12 13.49 16 3 H 0.02 1.33 6.91 -2.39 -0.02 1.32 16 4 C -0.52 -26.19 8.37 25.60 0.21 -25.98 16 5 H 0.07 3.19 7.65 -2.91 -0.02 3.17 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.92 -50.24 11.32 21.45 0.24 -49.99 16 8 Si 0.96 40.42 29.54 68.60 2.03 42.45 16 9 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 12 N -1.00 -41.35 3.12 -520.47 -1.62 -42.97 16 13 C 0.10 3.35 9.90 127.77 1.27 4.62 16 14 S 2.81 112.35 6.35 -56.49 -0.36 111.99 16 15 O -1.01 -47.44 16.03 -128.00 -2.05 -49.49 16 16 O -1.00 -41.15 16.33 -128.00 -2.09 -43.24 16 17 N -1.02 -32.72 3.77 -507.54 -1.92 -34.63 16 18 C 0.11 3.17 7.08 86.94 0.62 3.79 16 19 C -0.10 -1.86 6.06 31.50 0.19 -1.67 16 20 C -0.10 -1.99 0.62 -51.94 -0.03 -2.03 16 21 C -0.14 -2.61 5.89 31.36 0.18 -2.43 16 22 C 0.05 0.92 7.80 72.56 0.57 1.49 16 23 O -0.41 -8.74 11.37 -148.98 -1.69 -10.44 16 24 C 0.07 1.20 6.83 72.04 0.49 1.70 16 25 C 0.13 3.50 6.22 86.05 0.53 4.03 16 26 H 0.04 2.02 6.66 -2.39 -0.02 2.01 16 27 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 2.61 6.43 -2.39 -0.02 2.60 16 32 H 0.07 2.37 7.02 -2.39 -0.02 2.35 16 33 H 0.07 2.14 7.79 -2.39 -0.02 2.12 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.11 1.57 7.75 -2.38 -0.02 1.55 16 36 H 0.09 1.51 8.09 -2.39 -0.02 1.49 16 37 H 0.08 1.70 7.92 -2.38 -0.02 1.68 16 38 H 0.10 1.51 7.79 -2.39 -0.02 1.49 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.18 8.04 -2.39 -0.02 1.16 16 42 H 0.09 1.51 7.66 -2.39 -0.02 1.49 16 43 H 0.07 1.88 7.59 -2.38 -0.02 1.86 16 44 H 0.07 1.70 7.77 -2.39 -0.02 1.68 16 Total: -1.00 -65.53 354.96 -1.24 -66.78 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.98 Total: 17.29 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 5.24 Total: -7.73 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -3.30 Total: -127.60 kcal Atomic # 8 Polarization: -97.33 SS G_CDS: -5.84 Total: -103.17 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 16 Polarization: 112.35 SS G_CDS: -0.36 Total: 111.99 kcal Total: -65.53 -1.24 -66.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374586639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.994 kcal (2) G-P(sol) polarization free energy of solvation -65.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds