Wall clock time and date at job start Fri Apr 10 2020 18:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09001 * 109.47856 * 2 1 4 4 C 1.50700 * 109.47356 * 239.99471 * 2 1 3 5 5 H 1.08001 * 120.00631 * 245.30852 * 4 2 1 6 6 C 1.37881 * 119.99816 * 65.31003 * 4 2 1 7 7 N 1.31519 * 119.99891 * 5.39974 * 6 4 2 8 8 Si 1.86795 * 120.00137 * 185.39524 * 6 4 2 9 9 H 1.48504 * 109.47182 * 94.99768 * 8 6 4 10 10 H 1.48496 * 109.47358 * 214.99707 * 8 6 4 11 11 H 1.48501 * 109.47377 * 334.99792 * 8 6 4 12 12 N 1.46505 * 109.47321 * 119.99868 * 2 1 3 13 13 C 1.46500 * 119.99958 * 59.99541 * 12 2 1 14 14 S 1.65600 * 120.00016 * 240.00267 * 12 2 1 15 15 O 1.42104 * 106.40208 * 156.45763 * 14 12 2 16 16 O 1.42095 * 106.40220 * 23.53573 * 14 12 2 17 17 N 1.65603 * 107.21576 * 269.99655 * 14 12 2 18 18 C 1.47149 * 120.98106 * 94.88386 * 17 14 12 19 19 C 1.53300 * 108.38472 * 129.48697 * 18 17 14 20 20 O 1.42958 * 109.22161 * 52.29894 * 19 18 17 21 21 C 1.42969 * 114.16613 * 297.41664 * 20 19 18 22 22 C 1.47150 * 120.97827 * 274.90040 * 17 14 12 23 23 H 1.09000 * 109.68001 * 110.79669 * 22 17 14 24 24 C 1.53000 * 109.71598 * 350.25804 * 22 17 14 25 25 C 1.53007 * 117.49639 * 255.07965 * 24 22 17 26 26 C 1.53005 * 117.49770 * 186.42355 * 24 22 17 27 27 H 1.08998 * 109.47015 * 294.85840 * 1 2 3 28 28 H 1.09006 * 109.47314 * 54.86017 * 1 2 3 29 29 H 1.08996 * 109.47150 * 174.85614 * 1 2 3 30 30 H 0.96998 * 119.99830 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47280 * 270.00777 * 13 12 2 32 32 H 1.09003 * 109.47001 * 30.00942 * 13 12 2 33 33 H 1.08998 * 109.47213 * 150.00402 * 13 12 2 34 34 H 1.08988 * 109.68341 * 9.75519 * 18 17 14 35 35 H 1.09008 * 109.67385 * 249.20317 * 18 17 14 36 36 H 1.09000 * 109.50860 * 292.37274 * 19 18 17 37 37 H 1.08993 * 109.55023 * 172.25008 * 19 18 17 38 38 H 1.08998 * 109.51515 * 302.65963 * 21 20 19 39 39 H 1.09002 * 109.54975 * 182.53678 * 21 20 19 40 40 H 1.08990 * 115.55206 * 40.74994 * 24 22 17 41 41 H 1.08999 * 117.49805 * 359.97438 * 25 24 22 42 42 H 1.09001 * 117.49592 * 145.02168 * 25 24 22 43 43 H 1.09001 * 117.49413 * 214.97575 * 26 24 22 44 44 H 1.09000 * 117.49863 * 359.96931 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5807 -1.6359 -1.1336 6 6 1.7919 -0.1791 -2.4798 7 7 1.2183 0.9989 -2.5941 8 14 2.2808 -1.1323 -4.0100 9 1 1.1142 -1.9068 -4.5046 10 1 2.7275 -0.1843 -5.0621 11 1 3.3892 -2.0638 -3.6800 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 2.8227 -0.5645 3.5260 16 8 2.6903 1.4973 2.1192 17 7 4.5437 -0.1042 1.8180 18 6 5.2298 0.8918 0.9798 19 6 6.5704 1.2369 1.6384 20 8 7.2879 0.0297 1.9059 21 6 6.6340 -0.8483 2.8254 22 6 5.2967 -1.3002 2.2276 23 1 5.4782 -1.9347 1.3601 24 6 4.4997 -2.0777 3.2770 25 6 4.9665 -1.9838 4.7311 26 6 5.1837 -3.2756 3.9390 27 1 -0.3633 0.4320 0.9324 28 1 -0.3634 0.5915 -0.8404 29 1 -0.3633 -1.0235 -0.0921 30 1 1.0489 1.3725 -3.4730 31 1 0.7375 -2.1443 1.9994 32 1 1.5295 -2.5969 0.4709 33 1 2.4627 -2.5818 1.9865 34 1 4.6173 1.7899 0.9013 35 1 5.4044 0.4779 -0.0133 36 1 6.3908 1.7684 2.5729 37 1 7.1548 1.8668 0.9678 38 1 6.4547 -0.3244 3.7642 39 1 7.2636 -1.7190 3.0089 40 1 3.4271 -2.1473 3.0962 41 1 5.8416 -1.3685 4.9400 42 1 4.2009 -1.9920 5.5069 43 1 4.5609 -4.1330 4.1941 44 1 6.2014 -3.5100 3.6266 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375706651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:01 Heat of formation + Delta-G solvation = -78.870937 kcal Electronic energy + Delta-G solvation = -27757.195779 eV Core-core repulsion = 24031.040904 eV Total energy + Delta-G solvation = -3726.154875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.82406 -38.88726 -37.98199 -37.53914 -36.86287 -35.53979 -34.50685 -31.82314 -31.06435 -27.97334 -27.26028 -27.10392 -26.03620 -23.48387 -22.79293 -22.52027 -21.70064 -19.70613 -18.88945 -18.42160 -18.20542 -17.70999 -17.16071 -16.65258 -16.48290 -16.07544 -15.90086 -15.76623 -15.17598 -15.12864 -14.88193 -14.57215 -14.47806 -13.76600 -13.57379 -13.43768 -13.30571 -13.21331 -12.97975 -12.95808 -12.85298 -12.66209 -12.60685 -12.37220 -12.25351 -12.16553 -12.09857 -11.89837 -11.45842 -11.25927 -11.13328 -10.93867 -10.57201 -10.51777 -9.83896 -9.63368 -8.13020 -6.25403 -0.35331 1.43265 1.45607 1.54472 1.88188 2.43042 2.51597 2.81480 2.98406 3.17504 3.32576 3.51485 3.71768 3.93688 4.01407 4.08961 4.12734 4.18683 4.26430 4.32268 4.45213 4.58499 4.61273 4.72533 4.75035 4.81312 4.86896 4.88957 4.93245 4.99392 5.04149 5.10646 5.17671 5.21856 5.37354 5.38564 5.48391 5.58252 5.68489 5.84070 6.04495 6.10077 6.25004 6.83930 7.43811 8.94031 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.005844 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.446359 B = 4790.230483 C = 5254.819461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.273 3.727 3 H 0.025 0.975 4 C -0.529 4.529 5 H 0.067 0.933 6 C 0.020 3.980 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.266 1.266 12 N -0.997 5.997 13 C 0.093 3.907 14 S 2.787 3.213 15 O -0.979 6.979 16 O -1.020 7.020 17 N -1.001 6.001 18 C 0.082 3.918 19 C 0.057 3.943 20 O -0.387 6.387 21 C 0.052 3.948 22 C 0.152 3.848 23 H 0.085 0.915 24 C -0.214 4.214 25 C -0.167 4.167 26 C -0.153 4.153 27 H 0.023 0.977 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.129 0.871 38 H 0.064 0.936 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.331 -6.861 10.459 16.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.169 3.831 3 H 0.043 0.957 4 C -0.568 4.568 5 H 0.085 0.915 6 C -0.180 4.180 7 N -0.558 5.558 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.190 1.190 12 N -0.838 5.838 13 C -0.052 4.052 14 S 2.800 3.200 15 O -0.963 6.963 16 O -1.005 7.005 17 N -0.841 5.841 18 C -0.044 4.044 19 C -0.021 4.021 20 O -0.305 6.305 21 C -0.026 4.026 22 C 0.046 3.954 23 H 0.103 0.897 24 C -0.233 4.233 25 C -0.204 4.204 26 C -0.190 4.190 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.124 0.876 42 H 0.105 0.895 43 H 0.124 0.876 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.123 -6.264 11.003 16.211 hybrid contribution -0.562 -0.054 -1.405 1.515 sum 9.560 -6.318 9.598 14.948 Atomic orbital electron populations 1.21869 0.97934 1.00432 0.98893 1.18368 0.91730 0.91492 0.81550 0.95715 1.21581 1.35666 1.08796 0.90805 0.91506 1.25664 0.95207 0.95394 1.01782 1.70069 1.43849 1.17266 1.24609 0.85587 0.78578 0.78493 0.79212 1.20269 1.21367 1.19047 1.57713 1.64954 1.22395 1.38733 1.21580 1.00527 0.80742 1.02365 1.01667 0.72643 0.72150 0.73562 1.93605 1.86314 1.73788 1.42545 1.93493 1.84520 1.35015 1.87447 1.58144 1.29358 1.30393 1.66225 1.22170 0.95469 0.91908 0.94827 1.23007 0.91571 0.86849 1.00717 1.87913 1.46036 1.31360 1.65210 1.23324 0.92546 0.95175 0.91563 1.21249 0.92299 0.84798 0.97062 0.89719 1.23346 1.01240 1.03686 0.95039 1.23030 1.02903 1.01076 0.93412 1.23160 1.02379 0.91492 1.01961 0.95794 0.92745 0.93296 0.92701 0.92766 0.90596 0.90282 0.89587 0.90799 0.92259 0.85277 0.91771 0.85280 0.85255 0.87620 0.89492 0.87644 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 8.89 71.98 0.64 -5.61 16 2 C 0.27 13.46 2.49 44.24 0.11 13.57 16 3 H 0.03 1.41 6.89 -2.39 -0.02 1.40 16 4 C -0.53 -26.96 8.02 25.60 0.21 -26.76 16 5 H 0.07 3.29 7.15 -2.91 -0.02 3.27 16 6 C 0.02 1.02 5.28 84.66 0.45 1.47 16 7 N -0.92 -51.32 11.99 21.45 0.26 -51.07 16 8 Si 0.96 41.44 29.54 68.60 2.03 43.46 16 9 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 12 N -1.00 -41.01 3.12 -520.46 -1.62 -42.63 16 13 C 0.09 3.15 9.37 127.77 1.20 4.34 16 14 S 2.79 109.78 5.82 -56.49 -0.33 109.45 16 15 O -0.98 -36.64 12.42 -128.00 -1.59 -38.23 16 16 O -1.02 -48.07 15.22 -128.00 -1.95 -50.01 16 17 N -1.00 -33.34 3.40 -489.38 -1.66 -35.00 16 18 C 0.08 2.63 6.72 86.36 0.58 3.21 16 19 C 0.06 1.41 6.99 72.08 0.50 1.92 16 20 O -0.39 -9.86 10.74 -148.98 -1.60 -11.46 16 21 C 0.05 1.16 5.14 72.08 0.37 1.53 16 22 C 0.15 4.09 3.52 44.97 0.16 4.25 16 23 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 24 C -0.21 -5.52 3.74 -10.79 -0.04 -5.56 16 25 C -0.17 -3.72 9.12 30.62 0.28 -3.44 16 26 C -0.15 -2.78 9.94 30.62 0.30 -2.47 16 27 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 2.82 6.85 -2.38 -0.02 2.80 16 29 H 0.05 2.14 7.84 -2.39 -0.02 2.12 16 30 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 2.62 6.92 -2.39 -0.02 2.61 16 33 H 0.08 2.29 5.02 -2.39 -0.01 2.28 16 34 H 0.09 3.06 6.85 -2.39 -0.02 3.04 16 35 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.06 1.39 6.18 -2.39 -0.01 1.38 16 39 H 0.13 2.11 7.32 -2.39 -0.02 2.10 16 40 H 0.13 3.87 2.43 -15.28 -0.04 3.83 16 41 H 0.11 2.03 5.71 -2.39 -0.01 2.02 16 42 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.11 1.57 7.40 -2.39 -0.02 1.56 16 Total: -1.00 -64.82 342.81 -0.74 -65.56 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.98 Total: 23.48 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 4.76 Total: -13.56 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -3.03 Total: -128.70 kcal Atomic # 8 Polarization: -94.57 SS G_CDS: -5.14 Total: -99.71 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: 109.78 SS G_CDS: -0.33 Total: 109.45 kcal Total: -64.82 -0.74 -65.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375706651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.310 kcal (2) G-P(sol) polarization free energy of solvation -64.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds