Wall clock time and date at job start Fri Apr 10 2020 18:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46493 * 119.99601 * 2 1 4 4 C 1.50703 * 109.47275 * 275.35195 * 3 2 1 5 5 H 1.08002 * 120.00010 * 355.03701 * 4 3 2 6 6 C 1.37875 * 120.00149 * 175.02869 * 4 3 2 7 7 N 1.31519 * 120.00142 * 5.20278 * 6 4 3 8 8 Si 1.86797 * 119.99967 * 185.19603 * 6 4 3 9 9 H 1.48504 * 109.47072 * 90.00532 * 8 6 4 10 10 H 1.48504 * 109.47324 * 210.00595 * 8 6 4 11 11 H 1.48496 * 109.47279 * 330.00362 * 8 6 4 12 12 S 1.65592 * 119.99938 * 179.97438 * 2 1 3 13 13 O 1.42106 * 106.40098 * 161.40022 * 12 2 1 14 14 O 1.42094 * 106.40634 * 28.47701 * 12 2 1 15 15 N 1.65604 * 107.22169 * 274.93601 * 12 2 1 16 16 C 1.47421 * 125.64690 * 265.48732 * 15 12 2 17 17 C 1.54918 * 104.82940 * 155.88832 * 16 15 12 18 18 C 1.55158 * 101.58185 * 37.01000 * 17 16 15 19 19 C 1.47025 * 125.64480 * 85.50202 * 15 12 2 20 20 H 1.08999 * 109.88421 * 300.46127 * 19 15 12 21 21 C 1.53003 * 109.88050 * 61.62827 * 19 15 12 22 22 H 1.09004 * 109.86879 * 293.80443 * 21 19 15 23 23 C 1.54101 * 109.87757 * 54.81027 * 21 19 15 24 24 C 1.54805 * 104.18804 * 121.45709 * 23 21 19 25 25 C 1.55000 * 102.09489 * 20.87625 * 24 23 21 26 26 O 1.43741 * 109.87668 * 172.79717 * 21 19 15 27 27 H 1.08997 * 109.47055 * 269.99858 * 1 2 3 28 28 H 1.08998 * 109.47004 * 29.99961 * 1 2 3 29 29 H 1.08997 * 109.46561 * 150.00060 * 1 2 3 30 30 H 1.09003 * 109.47518 * 35.35562 * 3 2 1 31 31 H 1.09002 * 109.47521 * 155.35742 * 3 2 1 32 32 H 0.96998 * 119.99917 * 179.97438 * 7 6 4 33 33 H 1.09003 * 110.36324 * 274.71989 * 16 15 12 34 34 H 1.08991 * 110.37491 * 37.05111 * 16 15 12 35 35 H 1.09004 * 111.00025 * 155.07797 * 17 16 15 36 36 H 1.08997 * 111.00466 * 278.92863 * 17 16 15 37 37 H 1.08998 * 110.71882 * 206.13616 * 18 17 16 38 38 H 1.08998 * 110.87298 * 82.92779 * 18 17 16 39 39 H 1.09004 * 110.48457 * 240.12906 * 23 21 19 40 40 H 1.09001 * 110.49376 * 2.77284 * 23 21 19 41 41 H 1.08998 * 110.90890 * 139.07558 * 24 23 21 42 42 H 1.09006 * 110.90668 * 262.64470 * 24 23 21 43 43 H 1.08994 * 110.61580 * 81.47937 * 25 24 23 44 44 H 1.08999 * 110.61749 * 204.32578 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3338 1.7701 -1.4146 5 1 1.9882 1.1631 -2.2384 6 6 2.8997 3.0037 -1.6573 7 7 3.4131 3.6983 -0.6655 8 14 2.9374 3.6884 -3.3948 9 1 1.7063 4.4814 -3.6412 10 1 4.1286 4.5602 -3.5577 11 1 3.0075 2.5681 -4.3670 12 16 2.2930 -1.4341 0.0006 13 8 3.6126 -1.1358 -0.4343 14 8 1.4560 -2.3810 -0.6489 15 7 2.4203 -1.9260 1.5768 16 6 3.5639 -1.6631 2.4692 17 6 2.9771 -1.7461 3.9006 18 6 1.9501 -2.8994 3.7498 19 6 1.4116 -2.6976 2.3176 20 1 0.4722 -2.1458 2.3491 21 6 1.1986 -4.0556 1.6458 22 1 0.7521 -3.9159 0.6612 23 6 2.5463 -4.7905 1.5104 24 6 2.3356 -6.1150 2.2834 25 6 0.7907 -6.2394 2.2996 26 8 0.3418 -4.8743 2.4593 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3632 -0.8900 -0.5138 30 1 1.6533 2.0025 0.5947 31 1 3.1881 1.1165 0.4285 32 1 3.8115 4.5660 -0.8363 33 1 4.3350 -2.4209 2.3309 34 1 3.9699 -0.6690 2.2829 35 1 3.7497 -2.0033 4.6252 36 1 2.4814 -0.8148 4.1743 37 1 1.1479 -2.7994 4.4810 38 1 2.4384 -3.8692 3.8452 39 1 2.7676 -4.9915 0.4622 40 1 3.3466 -4.2066 1.9650 41 1 2.7876 -6.9521 1.7513 42 1 2.7310 -6.0413 3.2965 43 1 0.4290 -6.6525 1.3580 44 1 0.4639 -6.8544 3.1381 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408015766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:30 Heat of formation + Delta-G solvation = -114.023595 kcal Electronic energy + Delta-G solvation = -27059.895417 eV Core-core repulsion = 23332.216208 eV Total energy + Delta-G solvation = -3727.679208 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.13293 -37.67096 -36.66686 -35.48121 -35.18691 -32.44486 -32.08758 -30.95260 -30.58403 -27.78735 -27.06395 -25.06994 -23.26113 -22.31962 -22.00998 -21.49062 -20.45271 -18.28659 -17.35774 -17.18821 -16.51237 -16.36824 -16.00538 -15.61456 -15.14328 -14.88207 -14.42663 -13.85478 -13.68371 -13.47604 -13.41507 -13.20643 -13.15167 -12.66265 -12.29654 -12.16191 -11.89452 -11.64240 -11.61898 -11.43032 -11.37722 -11.27750 -11.17877 -11.17389 -11.09048 -11.06764 -10.72123 -10.63757 -10.57288 -10.51085 -10.03438 -9.77380 -9.61177 -8.85212 -8.44665 -8.05829 -6.07894 -4.11676 1.12220 3.30793 3.36719 3.37113 3.42791 3.80735 4.13010 4.43418 4.44941 4.48475 4.61645 4.74221 4.88051 4.93137 5.03259 5.15376 5.20859 5.26635 5.34834 5.44019 5.54888 5.61143 5.62310 5.66706 5.72650 5.83472 5.85823 5.93730 5.96713 5.99163 6.02763 6.10903 6.22422 6.28098 6.39532 6.48496 6.63680 6.88662 7.22790 7.42392 7.58664 7.89866 8.19511 8.90722 9.53273 11.00674 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025324 B = 0.004120 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.416443 B = 6794.315476 C = 7109.477403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.994 5.994 3 C 0.256 3.744 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.790 3.210 13 O -0.959 6.959 14 O -0.990 6.990 15 N -1.014 6.014 16 C 0.122 3.878 17 C -0.132 4.132 18 C -0.115 4.115 19 C 0.155 3.845 20 H 0.078 0.922 21 C 0.051 3.949 22 H 0.099 0.901 23 C -0.155 4.155 24 C -0.154 4.154 25 C 0.047 3.953 26 O -0.371 6.371 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.411 -16.115 11.172 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.837 5.837 3 C 0.134 3.866 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.800 3.200 13 O -0.943 6.943 14 O -0.974 6.974 15 N -0.853 5.853 16 C -0.004 4.004 17 C -0.171 4.171 18 C -0.154 4.154 19 C 0.048 3.952 20 H 0.096 0.904 21 C -0.008 4.008 22 H 0.117 0.883 23 C -0.193 4.193 24 C -0.191 4.191 25 C -0.030 4.030 26 O -0.289 6.289 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.159 -16.280 10.481 19.619 hybrid contribution 0.083 0.673 -0.809 1.056 sum -3.076 -15.607 9.672 18.617 Atomic orbital electron populations 1.21353 0.80147 1.03482 1.00164 1.57662 1.14390 1.23304 1.88348 1.19065 0.91031 0.78773 0.97699 1.21496 1.40277 1.02546 0.92722 0.92222 1.24930 0.94790 0.96761 0.97476 1.69933 1.38510 1.13494 1.31362 0.86518 0.77561 0.78997 0.84532 1.20529 1.21049 1.19716 1.01714 0.73498 0.72775 0.72052 1.93624 1.37461 1.84580 1.78660 1.93493 1.69719 1.61812 1.72394 1.59468 1.26699 1.67741 1.31421 1.21965 0.87918 1.01660 0.88815 1.22825 0.98727 0.99294 0.96217 1.22587 0.98929 0.99003 0.94874 1.21223 0.91833 0.90320 0.91819 0.90400 1.23514 0.90489 0.91042 0.95744 0.88328 1.23032 0.98573 0.96103 1.01564 1.23135 0.96859 0.97954 1.01201 1.23545 0.93167 0.84742 1.01502 1.88852 1.54775 1.16807 1.68506 0.94315 0.90307 0.91686 0.94618 0.94476 0.92664 0.91736 0.90024 0.90275 0.90415 0.90312 0.90563 0.90650 0.89734 0.90405 0.90601 0.92242 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.68 10.70 59.85 0.64 2.32 16 2 N -0.99 -21.07 3.23 -123.05 -0.40 -21.47 16 3 C 0.26 6.50 5.11 -5.20 -0.03 6.47 16 4 C -0.53 -15.06 9.38 -34.44 -0.32 -15.39 16 5 H 0.06 1.71 7.82 -52.49 -0.41 1.29 16 6 C 0.06 1.79 5.45 -17.82 -0.10 1.69 16 7 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 S 2.79 56.25 6.29 -107.50 -0.68 55.58 16 13 O -0.96 -23.04 16.47 -57.17 -0.94 -23.98 16 14 O -0.99 -20.33 14.09 -57.17 -0.81 -21.14 16 15 N -1.01 -15.72 2.83 -104.41 -0.30 -16.02 16 16 C 0.12 1.63 6.36 -2.53 -0.02 1.61 16 17 C -0.13 -1.36 7.09 -24.58 -0.17 -1.53 16 18 C -0.12 -1.21 5.65 -24.89 -0.14 -1.35 16 19 C 0.16 2.07 3.17 -66.95 -0.21 1.86 16 20 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 21 C 0.05 0.70 2.94 -26.15 -0.08 0.62 16 22 H 0.10 1.59 6.06 -51.93 -0.31 1.27 16 23 C -0.15 -1.87 5.58 -25.21 -0.14 -2.01 16 24 C -0.15 -1.40 6.85 -24.72 -0.17 -1.57 16 25 C 0.05 0.46 7.72 38.21 0.30 0.75 16 26 O -0.37 -4.75 10.74 -35.23 -0.38 -5.13 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 29 H 0.06 1.08 7.07 -51.93 -0.37 0.71 16 30 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 31 H 0.04 1.00 7.46 -51.93 -0.39 0.61 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.06 0.78 7.27 -51.93 -0.38 0.40 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.75 6.05 -51.93 -0.31 0.44 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.00 5.17 -51.93 -0.27 0.73 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.61 7.74 -51.93 -0.40 0.21 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -33.12 354.31 -9.92 -43.05 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.04 Total: -1.18 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -0.44 Total: -6.52 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.04 Total: -62.83 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -2.13 Total: -50.24 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 56.25 SS G_CDS: -0.68 Total: 55.58 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.12 -9.92 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408015766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.978 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds