Wall clock time and date at job start Fri Apr 10 2020 18:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46493 * 119.99601 * 2 1 4 4 C 1.50703 * 109.47275 * 275.35195 * 3 2 1 5 5 H 1.08002 * 120.00010 * 355.03701 * 4 3 2 6 6 C 1.37875 * 120.00149 * 175.02869 * 4 3 2 7 7 N 1.31519 * 120.00142 * 5.20278 * 6 4 3 8 8 Si 1.86797 * 119.99967 * 185.19603 * 6 4 3 9 9 H 1.48504 * 109.47072 * 90.00532 * 8 6 4 10 10 H 1.48504 * 109.47324 * 210.00595 * 8 6 4 11 11 H 1.48496 * 109.47279 * 330.00362 * 8 6 4 12 12 S 1.65592 * 119.99938 * 179.97438 * 2 1 3 13 13 O 1.42106 * 106.40098 * 161.40022 * 12 2 1 14 14 O 1.42094 * 106.40634 * 28.47701 * 12 2 1 15 15 N 1.65604 * 107.22169 * 274.93601 * 12 2 1 16 16 C 1.47421 * 125.64690 * 265.48732 * 15 12 2 17 17 C 1.54918 * 104.82940 * 155.88832 * 16 15 12 18 18 C 1.55158 * 101.58185 * 37.01000 * 17 16 15 19 19 C 1.47025 * 125.64480 * 85.50202 * 15 12 2 20 20 H 1.08999 * 109.88421 * 300.46127 * 19 15 12 21 21 C 1.53003 * 109.88050 * 61.62827 * 19 15 12 22 22 H 1.09004 * 109.86879 * 293.80443 * 21 19 15 23 23 C 1.54101 * 109.87757 * 54.81027 * 21 19 15 24 24 C 1.54805 * 104.18804 * 121.45709 * 23 21 19 25 25 C 1.55000 * 102.09489 * 20.87625 * 24 23 21 26 26 O 1.43741 * 109.87668 * 172.79717 * 21 19 15 27 27 H 1.08997 * 109.47055 * 269.99858 * 1 2 3 28 28 H 1.08998 * 109.47004 * 29.99961 * 1 2 3 29 29 H 1.08997 * 109.46561 * 150.00060 * 1 2 3 30 30 H 1.09003 * 109.47518 * 35.35562 * 3 2 1 31 31 H 1.09002 * 109.47521 * 155.35742 * 3 2 1 32 32 H 0.96998 * 119.99917 * 179.97438 * 7 6 4 33 33 H 1.09003 * 110.36324 * 274.71989 * 16 15 12 34 34 H 1.08991 * 110.37491 * 37.05111 * 16 15 12 35 35 H 1.09004 * 111.00025 * 155.07797 * 17 16 15 36 36 H 1.08997 * 111.00466 * 278.92863 * 17 16 15 37 37 H 1.08998 * 110.71882 * 206.13616 * 18 17 16 38 38 H 1.08998 * 110.87298 * 82.92779 * 18 17 16 39 39 H 1.09004 * 110.48457 * 240.12906 * 23 21 19 40 40 H 1.09001 * 110.49376 * 2.77284 * 23 21 19 41 41 H 1.08998 * 110.90890 * 139.07558 * 24 23 21 42 42 H 1.09006 * 110.90668 * 262.64470 * 24 23 21 43 43 H 1.08994 * 110.61580 * 81.47937 * 25 24 23 44 44 H 1.08999 * 110.61749 * 204.32578 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3338 1.7701 -1.4146 5 1 1.9882 1.1631 -2.2384 6 6 2.8997 3.0037 -1.6573 7 7 3.4131 3.6983 -0.6655 8 14 2.9374 3.6884 -3.3948 9 1 1.7063 4.4814 -3.6412 10 1 4.1286 4.5602 -3.5577 11 1 3.0075 2.5681 -4.3670 12 16 2.2930 -1.4341 0.0006 13 8 3.6126 -1.1358 -0.4343 14 8 1.4560 -2.3810 -0.6489 15 7 2.4203 -1.9260 1.5768 16 6 3.5639 -1.6631 2.4692 17 6 2.9771 -1.7461 3.9006 18 6 1.9501 -2.8994 3.7498 19 6 1.4116 -2.6976 2.3176 20 1 0.4722 -2.1458 2.3491 21 6 1.1986 -4.0556 1.6458 22 1 0.7521 -3.9159 0.6612 23 6 2.5463 -4.7905 1.5104 24 6 2.3356 -6.1150 2.2834 25 6 0.7907 -6.2394 2.2996 26 8 0.3418 -4.8743 2.4593 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3632 -0.8900 -0.5138 30 1 1.6533 2.0025 0.5947 31 1 3.1881 1.1165 0.4285 32 1 3.8115 4.5660 -0.8363 33 1 4.3350 -2.4209 2.3309 34 1 3.9699 -0.6690 2.2829 35 1 3.7497 -2.0033 4.6252 36 1 2.4814 -0.8148 4.1743 37 1 1.1479 -2.7994 4.4810 38 1 2.4384 -3.8692 3.8452 39 1 2.7676 -4.9915 0.4622 40 1 3.3466 -4.2066 1.9650 41 1 2.7876 -6.9521 1.7513 42 1 2.7310 -6.0413 3.2965 43 1 0.4290 -6.6525 1.3580 44 1 0.4639 -6.8544 3.1381 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408015766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:29 Heat of formation + Delta-G solvation = -137.580226 kcal Electronic energy + Delta-G solvation = -27060.916909 eV Core-core repulsion = 23332.216208 eV Total energy + Delta-G solvation = -3728.700701 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.10570 -38.67914 -38.35474 -37.26284 -36.91324 -34.54593 -32.96560 -31.95246 -31.62320 -29.72076 -28.00432 -26.84057 -24.39922 -24.06408 -23.00150 -22.38622 -21.53584 -19.76558 -18.92094 -18.59017 -18.28772 -17.72463 -17.22162 -16.97142 -16.50400 -16.12699 -15.82836 -15.34269 -15.05533 -14.70624 -14.53698 -14.36727 -14.30016 -14.09836 -13.95086 -13.62248 -13.38477 -13.22102 -13.09496 -12.96571 -12.77597 -12.63700 -12.51737 -12.43051 -12.31804 -12.24902 -12.09271 -12.01764 -11.98296 -11.79611 -11.48851 -11.43317 -10.63674 -10.59666 -10.07858 -9.80785 -8.23982 -6.36491 -0.45746 1.37658 1.39148 1.50052 1.94948 2.36453 2.47623 2.94163 3.06155 3.21752 3.54198 3.61246 3.77175 3.95061 4.02429 4.03826 4.12591 4.22912 4.33119 4.42828 4.51452 4.56825 4.65564 4.73122 4.79752 4.85900 4.90205 4.94200 4.96368 5.00572 5.02719 5.06873 5.13012 5.15555 5.18501 5.23001 5.34922 5.44593 5.51004 5.65647 5.88263 5.96060 6.06431 6.71264 7.32415 8.83733 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025324 B = 0.004120 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.416443 B = 6794.315476 C = 7109.477403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.004 6.004 3 C 0.273 3.727 4 C -0.556 4.556 5 H 0.049 0.951 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.275 1.275 12 S 2.802 3.198 13 O -1.005 7.005 14 O -0.999 6.999 15 N -1.008 6.008 16 C 0.109 3.891 17 C -0.119 4.119 18 C -0.104 4.104 19 C 0.147 3.853 20 H 0.076 0.924 21 C 0.052 3.948 22 H 0.066 0.934 23 C -0.161 4.161 24 C -0.143 4.143 25 C 0.039 3.961 26 O -0.381 6.381 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.028 0.972 31 H 0.015 0.985 32 H 0.269 0.731 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.057 0.943 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.756 -17.318 12.737 21.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.846 5.846 3 C 0.149 3.851 4 C -0.595 4.595 5 H 0.067 0.933 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.200 1.200 12 S 2.813 3.187 13 O -0.989 6.989 14 O -0.983 6.983 15 N -0.850 5.850 16 C -0.015 4.015 17 C -0.158 4.158 18 C -0.143 4.143 19 C 0.040 3.960 20 H 0.094 0.906 21 C -0.008 4.008 22 H 0.084 0.916 23 C -0.199 4.199 24 C -0.181 4.181 25 C -0.037 4.037 26 O -0.300 6.300 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.075 0.925 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.532 -17.493 12.041 21.528 hybrid contribution 0.155 0.949 -1.247 1.575 sum -3.377 -16.544 10.794 20.040 Atomic orbital electron populations 1.21549 0.78198 1.03554 1.02255 1.57597 1.15764 1.22125 1.89089 1.18604 0.90310 0.80164 0.95997 1.21806 1.40782 1.03096 0.93794 0.93317 1.25752 0.94217 0.96998 1.01560 1.70018 1.38832 1.13910 1.33270 0.85564 0.78383 0.78302 0.79525 1.18886 1.20110 1.19978 1.01028 0.72324 0.72378 0.72948 1.93556 1.39761 1.85199 1.80372 1.93482 1.69627 1.61601 1.73593 1.59020 1.28139 1.67506 1.30332 1.22255 0.87758 1.01064 0.90458 1.22813 0.99278 0.99342 0.94362 1.22587 0.99371 0.99605 0.92731 1.21474 0.91331 0.89810 0.93351 0.90580 1.23315 0.91218 0.91779 0.94475 0.91612 1.23063 0.97723 0.97889 1.01233 1.23136 0.96488 0.96572 1.01892 1.23807 0.93694 0.83533 1.02677 1.88833 1.54966 1.18165 1.67995 0.91203 0.90944 0.90868 0.95353 0.96705 0.92205 0.90331 0.92055 0.87203 0.90546 0.88623 0.89256 0.92317 0.89447 0.88858 0.88730 0.92466 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.18 10.70 127.77 1.37 4.55 16 2 N -1.00 -43.71 3.23 -543.22 -1.75 -45.46 16 3 C 0.27 14.33 5.11 85.64 0.44 14.76 16 4 C -0.56 -32.35 9.38 25.60 0.24 -32.11 16 5 H 0.05 2.87 7.82 -2.91 -0.02 2.84 16 6 C 0.01 0.85 5.45 84.65 0.46 1.31 16 7 N -0.92 -54.40 13.29 21.45 0.29 -54.12 16 8 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 9 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 12 S 2.80 116.62 6.29 -56.49 -0.36 116.26 16 13 O -1.00 -50.43 16.47 -128.00 -2.11 -52.54 16 14 O -1.00 -42.25 14.09 -128.00 -1.80 -44.06 16 15 N -1.01 -31.25 2.83 -484.25 -1.37 -32.62 16 16 C 0.11 2.85 6.36 86.86 0.55 3.41 16 17 C -0.12 -2.14 7.09 31.99 0.23 -1.92 16 18 C -0.10 -1.87 5.65 31.78 0.18 -1.69 16 19 C 0.15 3.75 3.17 45.34 0.14 3.89 16 20 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 21 C 0.05 1.37 2.94 30.97 0.09 1.47 16 22 H 0.07 2.17 6.06 -2.38 -0.01 2.16 16 23 C -0.16 -3.72 5.58 31.58 0.18 -3.54 16 24 C -0.14 -2.21 6.85 31.89 0.22 -1.99 16 25 C 0.04 0.66 7.72 72.67 0.56 1.22 16 26 O -0.38 -9.05 10.74 -148.98 -1.60 -10.65 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 2.63 8.07 -2.39 -0.02 2.61 16 29 H 0.07 2.45 7.07 -2.39 -0.02 2.43 16 30 H 0.03 1.51 8.11 -2.39 -0.02 1.49 16 31 H 0.01 0.84 7.46 -2.39 -0.02 0.82 16 32 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.08 1.82 7.27 -2.39 -0.02 1.80 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.41 6.05 -2.39 -0.01 1.39 16 39 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.09 1.93 5.17 -2.39 -0.01 1.91 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 1.14 7.74 -2.38 -0.02 1.12 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.19 354.31 -1.04 -74.23 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.98 Total: 12.61 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.66 Total: -10.66 kcal Atomic # 7 Polarization: -129.36 SS G_CDS: -2.84 Total: -132.19 kcal Atomic # 8 Polarization: -101.74 SS G_CDS: -5.51 Total: -107.25 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 116.62 SS G_CDS: -0.36 Total: 116.26 kcal Total: -73.19 -1.04 -74.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408015766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.353 kcal (2) G-P(sol) polarization free energy of solvation -73.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds