Wall clock time and date at job start Fri Apr 10 2020 18:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47457 * 2 1 4 4 C 1.50700 * 109.46949 * 120.00769 * 2 1 3 5 5 O 1.21279 * 120.00525 * 99.33070 * 4 2 1 6 6 N 1.34773 * 119.99699 * 279.32975 * 4 2 1 7 7 C 1.46505 * 120.00166 * 0.02562 * 6 4 2 8 8 C 1.46497 * 120.00443 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.47199 * 89.99605 * 8 6 4 10 10 H 1.08005 * 119.99964 * 0.02562 * 9 8 6 11 11 C 1.37877 * 120.00212 * 180.02562 * 9 8 6 12 12 N 1.31519 * 119.99542 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00394 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46835 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.47242 * 120.00284 * 13 11 9 16 16 H 1.48498 * 109.47599 * 240.00444 * 13 11 9 17 17 N 1.46906 * 109.46919 * 240.00050 * 2 1 3 18 18 C 1.45468 * 110.99972 * 188.98642 * 17 2 1 19 19 C 1.53178 * 107.19058 * 226.82266 * 18 17 2 20 20 C 1.45675 * 115.12756 * 268.77173 * 19 18 17 21 21 S 1.83548 * 109.73828 * 64.61013 * 20 19 18 22 22 O 1.42100 * 108.59691 * 177.02662 * 21 20 19 23 23 O 1.42091 * 108.60112 * 45.91592 * 21 20 19 24 24 C 1.80126 * 101.75595 * 291.47029 * 21 20 19 25 25 C 1.46716 * 111.00182 * 312.54716 * 17 2 1 26 26 H 1.09001 * 109.47177 * 59.99912 * 1 2 3 27 27 H 1.09002 * 109.47464 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47196 * 299.99852 * 1 2 3 29 29 H 1.08995 * 109.47312 * 89.99679 * 7 6 4 30 30 H 1.09004 * 109.47390 * 210.00296 * 7 6 4 31 31 H 1.09007 * 109.46666 * 329.99539 * 7 6 4 32 32 H 1.08994 * 109.47429 * 209.99941 * 8 6 4 33 33 H 1.08999 * 109.46799 * 330.00283 * 8 6 4 34 34 H 0.97000 * 119.99622 * 179.97438 * 12 11 9 35 35 H 1.08996 * 109.91489 * 107.39705 * 18 17 2 36 36 H 1.09004 * 109.90772 * 346.23825 * 18 17 2 37 37 H 1.08997 * 108.35239 * 147.30889 * 19 18 17 38 38 H 1.08997 * 108.35213 * 30.23577 * 19 18 17 39 39 H 1.08993 * 109.43035 * 304.52303 * 20 19 18 40 40 H 1.09002 * 109.38233 * 184.65966 * 20 19 18 41 41 H 1.08999 * 108.80476 * 206.21992 * 24 21 20 42 42 H 1.08994 * 108.80713 * 324.48045 * 24 21 20 43 43 H 1.09002 * 108.11470 * 72.21482 * 25 17 2 44 44 H 1.09001 * 108.11217 * 315.76924 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 8 2.3950 -1.8656 1.1581 6 7 2.0785 -0.0625 2.4111 7 6 1.6398 1.3327 2.4987 8 6 2.5672 -0.7529 3.6072 9 6 4.0565 -0.5560 3.7275 10 1 4.5859 0.0256 2.9873 11 6 4.7432 -1.1184 4.7826 12 7 4.0986 -1.8271 5.6836 13 14 6.5890 -0.8739 4.9322 14 1 7.0716 -0.0432 3.7997 15 1 6.8954 -0.1890 6.2136 16 1 7.2675 -2.1945 4.9022 17 7 2.0196 -0.6925 -1.1995 18 6 3.4581 -0.8984 -1.1319 19 6 4.0403 -0.4731 -2.4834 20 6 4.1468 -1.5365 -3.4733 21 16 2.4709 -2.1358 -3.9221 22 8 2.5990 -3.1219 -4.9371 23 8 1.6328 -1.0108 -4.1482 24 6 1.9499 -2.9435 -2.3987 25 6 1.3217 -1.9686 -1.3917 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.5752 1.3650 2.7299 30 1 2.1981 1.8404 3.2852 31 1 1.8201 1.8306 1.5459 32 1 2.0743 -0.3446 4.4894 33 1 2.3468 -1.8174 3.5277 34 1 4.5818 -2.2231 6.4257 35 1 3.6743 -1.9510 -0.9492 36 1 3.8835 -0.2875 -0.3357 37 1 5.0351 -0.0610 -2.3141 38 1 3.4118 0.3168 -2.8945 39 1 4.7276 -2.3606 -3.0591 40 1 4.6452 -1.1533 -4.3637 41 1 1.2203 -3.7159 -2.6423 42 1 2.8170 -3.4155 -1.9369 43 1 0.3045 -1.7527 -1.7185 44 1 1.2618 -2.4709 -0.4261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408128410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:49 Heat of formation + Delta-G solvation = -81.469642 kcal Electronic energy + Delta-G solvation = -26769.052080 eV Core-core repulsion = 23042.784517 eV Total energy + Delta-G solvation = -3726.267563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.32489 -37.73979 -36.78644 -35.96370 -34.95791 -34.43412 -32.83253 -31.99029 -29.92036 -27.92979 -26.11160 -25.94359 -24.59500 -23.07781 -21.87849 -20.67025 -18.76236 -18.36229 -17.12521 -16.84750 -16.73710 -16.50925 -16.00250 -15.79625 -15.24679 -14.82622 -14.61141 -14.31899 -14.05376 -13.86637 -13.59648 -13.20747 -12.95614 -12.56606 -12.42928 -12.33113 -12.11065 -12.03776 -11.93727 -11.80374 -11.69853 -11.67388 -11.29198 -11.23514 -11.04973 -10.95509 -10.83834 -10.69266 -10.62138 -10.26175 -10.15763 -9.72462 -9.58203 -8.53537 -7.98765 -7.76505 -6.14147 -4.19397 0.01071 2.64968 3.19099 3.21896 3.30103 3.33270 3.60860 3.74749 3.84784 3.94165 4.35501 4.49282 4.59227 4.63234 4.84571 4.93172 5.00094 5.11112 5.19817 5.21077 5.34867 5.44603 5.50929 5.57251 5.65209 5.75216 5.80889 5.83016 5.92514 5.94356 6.01668 6.07070 6.20607 6.24942 6.83258 6.96307 7.01727 7.32378 7.41072 7.81475 8.12442 8.27268 8.77226 8.92913 9.46119 10.93955 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.004027 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.935445 B = 6951.005628 C = 7736.598634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 H 0.110 0.890 4 C 0.478 3.522 5 O -0.544 6.544 6 N -0.596 5.596 7 C 0.079 3.921 8 C 0.244 3.756 9 C -0.526 4.526 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.898 3.102 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.507 5.507 18 C 0.032 3.968 19 C -0.118 4.118 20 C -0.577 4.577 21 S 2.413 3.587 22 O -0.957 6.957 23 O -0.918 6.918 24 C -0.611 4.611 25 C 0.058 3.942 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.850 4.049 -14.757 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.050 4.050 3 H 0.127 0.873 4 C 0.263 3.737 5 O -0.423 6.423 6 N -0.327 5.327 7 C -0.065 4.065 8 C 0.124 3.876 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 N -0.230 5.230 18 C -0.097 4.097 19 C -0.157 4.157 20 C -0.706 4.706 21 S 2.594 3.406 22 O -0.954 6.954 23 O -0.915 6.915 24 C -0.740 4.740 25 C -0.071 4.071 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.149 0.851 43 H 0.101 0.899 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.208 3.716 -15.805 17.050 hybrid contribution 1.826 -0.591 1.783 2.620 sum -3.382 3.125 -14.021 14.758 Atomic orbital electron populations 1.21875 0.92253 1.03143 1.03162 1.22045 0.97321 0.99052 0.86601 0.87281 1.21384 0.79344 0.87652 0.85299 1.90619 1.49471 1.17360 1.84830 1.48269 1.61718 1.12236 1.10476 1.21747 0.99058 0.83393 1.02307 1.19303 0.94239 0.93641 0.80382 1.21421 0.92770 1.32969 1.09335 0.92499 1.24938 0.98672 0.94898 0.95566 1.69941 1.35990 1.34020 1.13297 0.86452 0.85116 0.77994 0.77898 1.19825 1.20890 1.20883 1.62595 1.04523 1.20603 1.35312 1.22307 0.87986 1.02698 0.96671 1.20062 1.03513 0.97903 0.94233 1.28882 1.22845 1.09888 1.09019 1.08350 0.79001 0.76170 0.77079 1.93570 1.86698 1.61286 1.53817 1.93570 1.63682 1.50476 1.83816 1.30328 1.12414 1.11740 1.19503 1.21789 0.97605 0.88653 0.99037 0.90437 0.91894 0.91394 0.93447 0.90683 0.92108 0.95051 0.93942 0.92711 0.91074 0.89792 0.90236 0.88798 0.85718 0.85164 0.84275 0.85119 0.89926 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.45 37.16 0.31 -1.36 16 2 C 0.06 0.85 2.10 -68.86 -0.14 0.70 16 3 H 0.11 1.33 6.28 -51.93 -0.33 1.01 16 4 C 0.48 8.84 5.60 -10.99 -0.06 8.78 16 5 O -0.54 -11.96 12.45 5.56 0.07 -11.89 16 6 N -0.60 -11.62 2.86 -182.95 -0.52 -12.14 16 7 C 0.08 1.14 9.60 59.85 0.57 1.71 16 8 C 0.24 6.07 5.16 -5.19 -0.03 6.04 16 9 C -0.53 -14.26 9.39 -34.44 -0.32 -14.58 16 10 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 13 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 N -0.51 -6.76 3.97 -228.88 -0.91 -7.67 16 18 C 0.03 0.43 3.94 -4.50 -0.02 0.41 16 19 C -0.12 -1.25 5.06 -30.10 -0.15 -1.40 16 20 C -0.58 -5.20 5.98 33.70 0.20 -5.00 16 21 S 2.41 26.67 5.20 -107.50 -0.56 26.11 16 22 O -0.96 -13.34 18.10 -57.82 -1.05 -14.38 16 23 O -0.92 -12.69 16.75 -57.82 -0.97 -13.66 16 24 C -0.61 -6.43 5.56 37.47 0.21 -6.22 16 25 C 0.06 0.74 3.43 -3.61 -0.01 0.73 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.75 6.49 -51.93 -0.34 0.41 16 28 H 0.07 0.72 7.03 -51.93 -0.36 0.35 16 29 H 0.05 0.58 7.70 -51.93 -0.40 0.18 16 30 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 31 H 0.06 0.70 5.93 -51.93 -0.31 0.40 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.07 1.01 5.75 -51.93 -0.30 0.71 16 36 H 0.08 1.28 6.98 -51.93 -0.36 0.92 16 37 H 0.08 0.76 8.13 -51.93 -0.42 0.34 16 38 H 0.09 1.01 7.43 -51.93 -0.39 0.62 16 39 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.14 1.19 8.14 -51.74 -0.42 0.77 16 42 H 0.13 1.25 7.04 -51.75 -0.36 0.89 16 43 H 0.08 0.96 6.95 -51.93 -0.36 0.60 16 44 H 0.08 1.29 5.51 -51.93 -0.29 1.00 16 LS Contribution 346.66 15.07 5.22 5.22 Total: -1.00 -35.66 346.66 -9.21 -44.87 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.67 Total: 1.08 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 0.46 Total: -8.59 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.70 Total: -44.92 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -1.95 Total: -39.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 26.67 SS G_CDS: -0.56 Total: 26.11 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.66 -9.21 -44.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408128410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.602 kcal (2) G-P(sol) polarization free energy of solvation -35.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds