Wall clock time and date at job start Fri Apr 10 2020 18:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 119.99767 * 2 1 4 4 C 1.50700 * 109.46871 * 274.85294 * 3 2 1 5 5 H 1.07997 * 120.00042 * 4.65615 * 4 3 2 6 6 C 1.37882 * 119.99962 * 184.66151 * 4 3 2 7 7 N 1.31510 * 120.00089 * 5.38649 * 6 4 3 8 8 Si 1.86803 * 119.99818 * 185.39257 * 6 4 3 9 9 H 1.48498 * 109.47301 * 94.97425 * 8 6 4 10 10 H 1.48505 * 109.46913 * 214.96936 * 8 6 4 11 11 H 1.48495 * 109.47237 * 334.96897 * 8 6 4 12 12 S 1.65599 * 119.99983 * 179.97438 * 2 1 3 13 13 O 1.42102 * 106.39906 * 150.60120 * 12 2 1 14 14 O 1.42096 * 106.40179 * 17.68397 * 12 2 1 15 15 N 1.65599 * 107.22169 * 264.14089 * 12 2 1 16 16 C 1.46504 * 119.99550 * 63.47306 * 15 12 2 17 17 H 1.09002 * 109.87894 * 22.59917 * 16 15 12 18 18 C 1.53681 * 109.88459 * 261.49403 * 16 15 12 19 19 C 1.52880 * 111.81281 * 183.00564 * 18 16 15 20 20 C 1.53777 * 111.65166 * 53.85238 * 19 18 16 21 21 C 1.51309 * 107.41426 * 303.59850 * 20 19 18 22 22 H 1.08994 * 108.77305 * 306.72951 * 21 20 19 23 23 O 1.41437 * 118.03870 * 182.29804 * 21 20 19 24 24 C 1.44517 * 108.19765 * 208.94748 * 23 21 20 25 25 C 1.56569 * 107.70657 * 6.78571 * 24 23 21 26 26 C 1.52014 * 109.88497 * 143.62483 * 16 15 12 27 27 H 1.09000 * 111.30783 * 61.97737 * 26 16 15 28 28 H 1.09001 * 109.47234 * 270.00490 * 1 2 3 29 29 H 1.09001 * 109.46933 * 29.99943 * 1 2 3 30 30 H 1.08999 * 109.47240 * 150.00650 * 1 2 3 31 31 H 1.08997 * 109.47678 * 34.85071 * 3 2 1 32 32 H 1.09005 * 109.47130 * 154.85498 * 3 2 1 33 33 H 0.97000 * 119.99827 * 180.02562 * 7 6 4 34 34 H 0.96991 * 120.00483 * 243.19477 * 15 12 2 35 35 H 1.09004 * 109.07941 * 302.74702 * 18 16 15 36 36 H 1.08995 * 109.08063 * 61.71928 * 18 16 15 37 37 H 1.08999 * 108.32300 * 293.68218 * 19 18 16 38 38 H 1.09000 * 109.51094 * 174.80167 * 19 18 16 39 39 H 1.08998 * 109.87103 * 184.12427 * 20 19 18 40 40 H 1.08996 * 109.86823 * 63.07659 * 20 19 18 41 41 H 1.08993 * 109.87424 * 125.46778 * 24 23 21 42 42 H 1.09002 * 109.87238 * 246.45160 * 24 23 21 43 43 H 1.09000 * 110.86259 * 262.76135 * 25 24 23 44 44 H 1.09000 * 111.80995 * 138.34346 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3445 1.7638 -1.4157 5 1 1.8694 1.2310 -2.2262 6 6 3.0855 2.8970 -1.6764 7 7 3.7507 3.4852 -0.7063 8 14 3.1445 3.5967 -3.4074 9 1 2.1208 4.6636 -3.5452 10 1 4.4913 4.1668 -3.6652 11 1 2.8685 2.5161 -4.3878 12 16 2.2930 -1.4341 0.0006 13 8 3.5221 -1.1880 -0.6686 14 8 1.3689 -2.4312 -0.4130 15 7 2.6780 -1.7773 1.5743 16 6 1.6144 -2.0163 2.5531 17 1 0.7023 -2.3238 2.0417 18 6 1.3546 -0.7378 3.3653 19 6 0.3019 -0.9590 4.4516 20 6 0.6622 -2.1484 5.3572 21 6 0.8338 -3.3597 4.4668 22 1 -0.0593 -3.4726 3.8522 23 8 1.1225 -4.6007 5.0809 24 6 1.8887 -5.3975 4.1499 25 6 2.2302 -4.4935 2.9181 26 6 2.0466 -3.0950 3.5331 27 1 2.9282 -2.7885 4.0961 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5137 31 1 1.6488 2.0051 0.5872 32 1 3.1848 1.1183 0.4367 33 1 4.2718 4.2826 -0.8896 34 1 3.6076 -1.8241 1.8471 35 1 2.2820 -0.4264 3.8461 36 1 1.0219 0.0513 2.6910 37 1 -0.6544 -1.1562 3.9670 38 1 0.2138 -0.0600 5.0616 39 1 -0.1404 -2.3256 6.0730 40 1 1.5928 -1.9427 5.8861 41 1 2.8163 -5.7254 4.6189 42 1 1.3059 -6.2636 3.8364 43 1 1.5227 -4.6607 2.1059 44 1 3.2556 -4.6413 2.5791 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408286197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:56 Heat of formation + Delta-G solvation = -129.647927 kcal Electronic energy + Delta-G solvation = -26722.918601 eV Core-core repulsion = 22994.561871 eV Total energy + Delta-G solvation = -3728.356730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.64132 -37.06681 -36.53017 -35.50344 -35.17101 -34.10327 -32.45276 -31.76500 -29.31817 -27.99543 -27.75886 -25.08129 -23.12733 -22.31038 -22.17845 -21.29655 -20.53968 -18.88340 -17.35806 -17.02770 -16.56881 -16.31396 -16.05025 -15.42417 -15.24264 -14.94985 -14.63689 -14.27765 -14.10327 -13.71585 -13.44193 -13.31395 -12.98695 -12.48265 -12.44508 -12.25334 -12.17253 -11.69802 -11.63016 -11.57336 -11.45192 -11.34748 -11.17008 -11.08861 -11.00522 -10.93034 -10.71727 -10.70753 -10.53712 -10.31515 -10.05234 -9.77800 -9.65525 -9.31067 -8.45609 -8.08753 -6.08286 -4.11271 1.22513 3.30067 3.37138 3.40455 3.43314 3.51577 4.09754 4.31172 4.43066 4.43683 4.53128 4.79470 4.82876 4.97793 5.01158 5.10704 5.11003 5.16502 5.24513 5.27634 5.29317 5.46515 5.59504 5.62618 5.65945 5.75311 5.79018 5.84174 5.91571 5.97544 6.00685 6.05473 6.21183 6.24191 6.39691 6.52262 6.81575 7.08693 7.22913 7.39038 7.59333 7.90316 8.18973 8.90956 9.53720 11.00377 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024220 B = 0.003911 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.807597 B = 7157.069511 C = 7644.654038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.995 5.995 3 C 0.259 3.741 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.780 3.220 13 O -0.963 6.963 14 O -1.000 7.000 15 N -1.126 6.126 16 C 0.169 3.831 17 H 0.092 0.908 18 C -0.145 4.145 19 C -0.113 4.113 20 C -0.111 4.111 21 C 0.080 3.920 22 H 0.061 0.939 23 O -0.374 6.374 24 C 0.050 3.950 25 C -0.150 4.150 26 C -0.129 4.129 27 H 0.095 0.905 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.039 0.961 33 H 0.263 0.737 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 -12.183 12.680 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.838 5.838 3 C 0.137 3.863 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.788 3.212 13 O -0.947 6.947 14 O -0.984 6.984 15 N -0.883 5.883 16 C 0.061 3.939 17 H 0.110 0.890 18 C -0.185 4.185 19 C -0.151 4.151 20 C -0.149 4.149 21 C 0.021 3.979 22 H 0.079 0.921 23 O -0.293 6.293 24 C -0.027 4.027 25 C -0.187 4.187 26 C -0.150 4.150 27 H 0.113 0.887 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.245 0.755 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.925 -12.603 12.075 18.432 hybrid contribution 0.573 0.823 -0.694 1.220 sum -5.352 -11.780 11.381 17.232 Atomic orbital electron populations 1.21381 0.80278 1.03464 1.00206 1.57599 1.14135 1.23320 1.88752 1.19029 0.90936 0.78749 0.97571 1.21504 1.31852 1.10181 0.93317 0.92126 1.24927 0.94703 0.96906 0.97430 1.69922 1.30683 1.20611 1.32173 0.86505 0.77386 0.79156 0.84539 1.20667 1.21087 1.19714 1.01979 0.73376 0.72992 0.72844 1.93654 1.44881 1.85255 1.70876 1.93517 1.65362 1.58623 1.80854 1.56266 1.14780 1.87969 1.29303 1.20517 0.90246 0.93897 0.89203 0.89041 1.22240 1.00216 0.98136 0.97877 1.21524 0.99088 0.97812 0.96663 1.21426 1.02747 0.92725 0.97991 1.22314 0.96840 0.85080 0.93642 0.92114 1.88260 1.73781 1.26677 1.40561 1.23753 0.95520 0.93996 0.89403 1.23169 1.03581 0.94106 0.97861 1.23002 0.99593 0.95007 0.97363 0.88712 0.94296 0.90421 0.91587 0.95119 0.94267 0.92719 0.75486 0.91156 0.89942 0.91707 0.90647 0.90928 0.91002 0.91033 0.91224 0.89809 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 10.64 59.85 0.64 2.16 16 2 N -1.00 -19.69 3.13 -123.05 -0.39 -20.07 16 3 C 0.26 6.25 5.08 -5.20 -0.03 6.23 16 4 C -0.53 -14.63 9.38 -34.44 -0.32 -14.96 16 5 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 6 C 0.06 1.76 5.45 -17.82 -0.10 1.66 16 7 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 S 2.78 53.23 6.02 -107.50 -0.65 52.58 16 13 O -0.96 -22.83 17.33 -57.17 -0.99 -23.82 16 14 O -1.00 -19.92 16.08 -57.17 -0.92 -20.84 16 15 N -1.13 -15.93 5.47 -5.02 -0.03 -15.95 16 16 C 0.17 2.02 2.46 -68.08 -0.17 1.85 16 17 H 0.09 1.13 7.39 -51.93 -0.38 0.75 16 18 C -0.15 -1.61 5.48 -26.44 -0.14 -1.76 16 19 C -0.11 -1.01 5.85 -26.39 -0.15 -1.16 16 20 C -0.11 -1.00 5.99 -27.18 -0.16 -1.16 16 21 C 0.08 0.83 2.82 -26.35 -0.07 0.75 16 22 H 0.06 0.63 7.82 -51.93 -0.41 0.23 16 23 O -0.37 -4.30 11.36 -35.12 -0.40 -4.70 16 24 C 0.05 0.47 7.84 39.08 0.31 0.77 16 25 C -0.15 -1.50 6.64 -24.35 -0.16 -1.66 16 26 C -0.13 -1.34 2.28 -89.43 -0.20 -1.55 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.51 7.26 -51.93 -0.38 0.13 16 29 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 30 H 0.07 1.03 7.00 -51.93 -0.36 0.67 16 31 H 0.03 0.74 8.11 -51.93 -0.42 0.32 16 32 H 0.04 1.01 7.77 -51.93 -0.40 0.61 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.41 5.17 8.86 -34.47 -0.31 4.87 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.03 7.16 -51.93 -0.37 0.66 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 360.37 15.07 5.43 5.43 Total: -1.00 -33.41 360.37 -10.02 -43.43 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.22 Total: 1.20 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -0.57 Total: -8.82 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.32 Total: -61.11 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -2.31 Total: -49.36 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 53.23 SS G_CDS: -0.65 Total: 52.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.41 -10.02 -43.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408286197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.219 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds