Wall clock time and date at job start Fri Apr 10 2020 18:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 119.99767 * 2 1 4 4 C 1.50700 * 109.46871 * 274.85294 * 3 2 1 5 5 H 1.07997 * 120.00042 * 4.65615 * 4 3 2 6 6 C 1.37882 * 119.99962 * 184.66151 * 4 3 2 7 7 N 1.31510 * 120.00089 * 5.38649 * 6 4 3 8 8 Si 1.86803 * 119.99818 * 185.39257 * 6 4 3 9 9 H 1.48498 * 109.47301 * 94.97425 * 8 6 4 10 10 H 1.48505 * 109.46913 * 214.96936 * 8 6 4 11 11 H 1.48495 * 109.47237 * 334.96897 * 8 6 4 12 12 S 1.65599 * 119.99983 * 179.97438 * 2 1 3 13 13 O 1.42102 * 106.39906 * 150.60120 * 12 2 1 14 14 O 1.42096 * 106.40179 * 17.68397 * 12 2 1 15 15 N 1.65599 * 107.22169 * 264.14089 * 12 2 1 16 16 C 1.46504 * 119.99550 * 63.47306 * 15 12 2 17 17 H 1.09002 * 109.87894 * 22.59917 * 16 15 12 18 18 C 1.53681 * 109.88459 * 261.49403 * 16 15 12 19 19 C 1.52880 * 111.81281 * 183.00564 * 18 16 15 20 20 C 1.53777 * 111.65166 * 53.85238 * 19 18 16 21 21 C 1.51309 * 107.41426 * 303.59850 * 20 19 18 22 22 H 1.08994 * 108.77305 * 306.72951 * 21 20 19 23 23 O 1.41437 * 118.03870 * 182.29804 * 21 20 19 24 24 C 1.44517 * 108.19765 * 208.94748 * 23 21 20 25 25 C 1.56569 * 107.70657 * 6.78571 * 24 23 21 26 26 C 1.52014 * 109.88497 * 143.62483 * 16 15 12 27 27 H 1.09000 * 111.30783 * 61.97737 * 26 16 15 28 28 H 1.09001 * 109.47234 * 270.00490 * 1 2 3 29 29 H 1.09001 * 109.46933 * 29.99943 * 1 2 3 30 30 H 1.08999 * 109.47240 * 150.00650 * 1 2 3 31 31 H 1.08997 * 109.47678 * 34.85071 * 3 2 1 32 32 H 1.09005 * 109.47130 * 154.85498 * 3 2 1 33 33 H 0.97000 * 119.99827 * 180.02562 * 7 6 4 34 34 H 0.96991 * 120.00483 * 243.19477 * 15 12 2 35 35 H 1.09004 * 109.07941 * 302.74702 * 18 16 15 36 36 H 1.08995 * 109.08063 * 61.71928 * 18 16 15 37 37 H 1.08999 * 108.32300 * 293.68218 * 19 18 16 38 38 H 1.09000 * 109.51094 * 174.80167 * 19 18 16 39 39 H 1.08998 * 109.87103 * 184.12427 * 20 19 18 40 40 H 1.08996 * 109.86823 * 63.07659 * 20 19 18 41 41 H 1.08993 * 109.87424 * 125.46778 * 24 23 21 42 42 H 1.09002 * 109.87238 * 246.45160 * 24 23 21 43 43 H 1.09000 * 110.86259 * 262.76135 * 25 24 23 44 44 H 1.09000 * 111.80995 * 138.34346 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3445 1.7638 -1.4157 5 1 1.8694 1.2310 -2.2262 6 6 3.0855 2.8970 -1.6764 7 7 3.7507 3.4852 -0.7063 8 14 3.1445 3.5967 -3.4074 9 1 2.1208 4.6636 -3.5452 10 1 4.4913 4.1668 -3.6652 11 1 2.8685 2.5161 -4.3878 12 16 2.2930 -1.4341 0.0006 13 8 3.5221 -1.1880 -0.6686 14 8 1.3689 -2.4312 -0.4130 15 7 2.6780 -1.7773 1.5743 16 6 1.6144 -2.0163 2.5531 17 1 0.7023 -2.3238 2.0417 18 6 1.3546 -0.7378 3.3653 19 6 0.3019 -0.9590 4.4516 20 6 0.6622 -2.1484 5.3572 21 6 0.8338 -3.3597 4.4668 22 1 -0.0593 -3.4726 3.8522 23 8 1.1225 -4.6007 5.0809 24 6 1.8887 -5.3975 4.1499 25 6 2.2302 -4.4935 2.9181 26 6 2.0466 -3.0950 3.5331 27 1 2.9282 -2.7885 4.0961 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5137 31 1 1.6488 2.0051 0.5872 32 1 3.1848 1.1183 0.4367 33 1 4.2718 4.2826 -0.8896 34 1 3.6076 -1.8241 1.8471 35 1 2.2820 -0.4264 3.8461 36 1 1.0219 0.0513 2.6910 37 1 -0.6544 -1.1562 3.9670 38 1 0.2138 -0.0600 5.0616 39 1 -0.1404 -2.3256 6.0730 40 1 1.5928 -1.9427 5.8861 41 1 2.8163 -5.7254 4.6189 42 1 1.3059 -6.2636 3.8364 43 1 1.5227 -4.6607 2.1059 44 1 3.2556 -4.6413 2.5791 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408286197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:55 Heat of formation + Delta-G solvation = -154.354405 kcal Electronic energy + Delta-G solvation = -26723.989955 eV Core-core repulsion = 22994.561871 eV Total energy + Delta-G solvation = -3729.428084 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.47130 -38.32488 -37.85167 -37.16919 -36.84504 -35.04526 -34.49179 -32.66422 -30.16003 -29.62999 -28.84858 -26.75907 -24.20710 -23.91917 -23.02960 -22.14294 -21.40153 -20.28236 -18.98409 -18.38506 -18.29772 -17.73013 -17.01548 -16.83832 -16.34407 -16.13058 -15.78560 -15.53590 -15.09580 -14.93427 -14.89611 -14.53259 -14.10629 -13.90971 -13.84738 -13.37364 -13.31885 -13.22717 -13.14113 -13.02023 -12.92800 -12.82027 -12.51182 -12.45042 -12.33476 -12.14631 -11.97879 -11.83493 -11.76209 -11.73679 -11.51073 -11.16766 -10.58344 -10.48033 -10.39969 -9.76557 -8.19763 -6.30112 -0.30113 1.39176 1.41201 1.51767 2.02115 2.41117 2.62453 2.72370 3.11164 3.42556 3.56447 3.61116 3.68669 3.91383 4.03886 4.14694 4.20798 4.26090 4.30089 4.38503 4.43487 4.47808 4.60235 4.70959 4.79099 4.83863 4.87083 4.93245 5.04345 5.06596 5.10371 5.18483 5.20671 5.23119 5.28263 5.35280 5.46824 5.51680 5.70721 5.89230 6.04132 6.10517 6.17105 6.77855 7.38335 8.87660 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024220 B = 0.003911 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.807597 B = 7157.069511 C = 7644.654038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.000 6.000 3 C 0.276 3.724 4 C -0.549 4.549 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.954 3.046 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.275 1.275 12 S 2.797 3.203 13 O -1.013 7.013 14 O -1.008 7.008 15 N -1.112 6.112 16 C 0.165 3.835 17 H 0.090 0.910 18 C -0.144 4.144 19 C -0.107 4.107 20 C -0.107 4.107 21 C 0.080 3.920 22 H 0.059 0.941 23 O -0.390 6.390 24 C 0.049 3.951 25 C -0.153 4.153 26 C -0.126 4.126 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.018 0.982 33 H 0.267 0.733 34 H 0.421 0.579 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.842 -12.539 13.599 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.842 5.842 3 C 0.152 3.848 4 C -0.589 4.589 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.779 3.221 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.199 1.199 12 S 2.805 3.195 13 O -0.997 6.997 14 O -0.992 6.992 15 N -0.873 5.873 16 C 0.058 3.942 17 H 0.108 0.892 18 C -0.184 4.184 19 C -0.145 4.145 20 C -0.145 4.145 21 C 0.021 3.979 22 H 0.077 0.923 23 O -0.309 6.309 24 C -0.027 4.027 25 C -0.190 4.190 26 C -0.147 4.147 27 H 0.120 0.880 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.256 0.744 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.793 -12.970 12.994 19.575 hybrid contribution 0.805 0.846 -0.920 1.487 sum -5.988 -12.124 12.073 18.127 Atomic orbital electron populations 1.21610 0.78198 1.03513 1.02582 1.57445 1.15533 1.21889 1.89321 1.18581 0.90372 0.80254 0.95594 1.21866 1.31812 1.10480 0.94726 0.93101 1.25707 0.94451 0.97322 1.01140 1.70007 1.31266 1.21072 1.33906 0.85607 0.77825 0.78617 0.80035 1.19053 1.20650 1.19949 1.01236 0.72162 0.72618 0.73513 1.93583 1.47088 1.85881 1.73170 1.93501 1.65417 1.58576 1.81682 1.55824 1.16009 1.87361 1.28075 1.20741 0.89364 0.95168 0.88949 0.89242 1.22223 1.01036 0.96987 0.98117 1.21497 0.98476 0.98421 0.96113 1.21416 1.03278 0.91916 0.97880 1.22377 0.96425 0.85274 0.93836 0.92308 1.88243 1.74176 1.27174 1.41331 1.23857 0.96144 0.93840 0.88874 1.23199 1.03780 0.94123 0.97914 1.22973 1.00139 0.94562 0.96977 0.87996 0.90764 0.90955 0.90947 0.95217 0.96422 0.92443 0.74362 0.91150 0.91354 0.90975 0.89429 0.89936 0.90774 0.89705 0.90293 0.90849 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.72 10.64 127.77 1.36 4.08 16 2 N -1.00 -39.49 3.13 -543.23 -1.70 -41.19 16 3 C 0.28 13.48 5.08 85.63 0.44 13.91 16 4 C -0.55 -30.74 9.38 25.60 0.24 -30.50 16 5 H 0.05 2.87 7.82 -2.91 -0.02 2.85 16 6 C 0.01 0.75 5.45 84.66 0.46 1.21 16 7 N -0.92 -53.59 13.29 21.45 0.28 -53.30 16 8 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 12 S 2.80 107.30 6.02 -56.49 -0.34 106.96 16 13 O -1.01 -49.11 17.33 -128.00 -2.22 -51.33 16 14 O -1.01 -39.70 16.08 -128.00 -2.06 -41.75 16 15 N -1.11 -30.80 5.47 -169.78 -0.93 -31.73 16 16 C 0.16 3.71 2.46 44.89 0.11 3.82 16 17 H 0.09 2.08 7.39 -2.39 -0.02 2.06 16 18 C -0.14 -2.97 5.48 30.78 0.17 -2.80 16 19 C -0.11 -1.66 5.85 30.82 0.18 -1.48 16 20 C -0.11 -1.66 5.99 30.30 0.18 -1.48 16 21 C 0.08 1.48 2.82 30.84 0.09 1.57 16 22 H 0.06 1.12 7.82 -2.39 -0.02 1.10 16 23 O -0.39 -8.19 11.36 -148.60 -1.69 -9.88 16 24 C 0.05 0.82 7.84 73.23 0.57 1.40 16 25 C -0.15 -2.83 6.64 32.14 0.21 -2.62 16 26 C -0.13 -2.41 2.28 -10.02 -0.02 -2.43 16 27 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 1.80 7.26 -2.39 -0.02 1.79 16 29 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 30 H 0.07 2.19 7.00 -2.39 -0.02 2.17 16 31 H 0.03 1.45 8.11 -2.39 -0.02 1.43 16 32 H 0.02 0.94 7.77 -2.38 -0.02 0.92 16 33 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.42 10.36 8.86 -96.75 -0.86 9.51 16 35 H 0.07 1.44 8.14 -2.38 -0.02 1.43 16 36 H 0.07 1.62 7.16 -2.39 -0.02 1.60 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.51 8.11 -2.39 -0.02 1.50 16 44 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -71.10 360.37 -2.50 -73.60 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.13 Total: 17.52 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 3.99 Total: -15.31 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -2.34 Total: -126.22 kcal Atomic # 8 Polarization: -97.00 SS G_CDS: -5.96 Total: -102.96 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 107.30 SS G_CDS: -0.34 Total: 106.96 kcal Total: -71.10 -2.50 -73.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408286197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.752 kcal (2) G-P(sol) polarization free energy of solvation -71.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds