Wall clock time and date at job start Fri Apr 10 2020 18:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47223 * 2 1 4 4 C 1.50702 * 109.47061 * 240.00323 * 2 1 3 5 5 O 1.21286 * 119.99704 * 264.99915 * 4 2 1 6 6 N 1.34777 * 120.00381 * 84.99608 * 4 2 1 7 7 C 1.46501 * 120.00073 * 180.02562 * 6 4 2 8 8 C 1.46497 * 119.99865 * 0.02562 * 6 4 2 9 9 S 1.81394 * 109.47399 * 120.00262 * 2 1 3 10 10 O 1.42099 * 110.54633 * 193.37307 * 9 2 1 11 11 O 1.42101 * 110.54578 * 56.62164 * 9 2 1 12 12 N 1.65603 * 104.45030 * 304.99925 * 9 2 1 13 13 C 1.36940 * 119.99810 * 263.81916 * 12 9 2 14 14 H 1.07999 * 120.00079 * 127.72421 * 13 12 9 15 15 C 1.38817 * 119.99773 * 307.71896 * 13 12 9 16 16 N 1.31621 * 119.99758 * 152.84615 * 15 13 12 17 17 Si 1.86803 * 119.99943 * 332.84988 * 15 13 12 18 18 H 1.48501 * 109.47198 * 94.74245 * 17 15 13 19 19 H 1.48507 * 109.46882 * 214.73645 * 17 15 13 20 20 H 1.48493 * 109.47411 * 334.73743 * 17 15 13 21 21 C 1.46494 * 120.00271 * 83.80906 * 12 9 2 22 22 C 1.55228 * 110.47137 * 228.52352 * 21 12 9 23 23 C 1.54890 * 102.58936 * 203.39211 * 22 21 12 24 24 C 1.54269 * 104.31066 * 37.93771 * 23 22 21 25 25 C 1.53871 * 106.59493 * 336.31855 * 24 23 22 26 26 H 1.09000 * 109.47516 * 59.99675 * 1 2 3 27 27 H 1.08999 * 109.47223 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46888 * 300.00127 * 1 2 3 29 29 H 1.08996 * 109.47364 * 60.00060 * 7 6 4 30 30 H 1.08993 * 109.46874 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46974 * 299.99915 * 7 6 4 32 32 H 1.08998 * 109.47462 * 89.99100 * 8 6 4 33 33 H 1.08995 * 109.47407 * 209.99973 * 8 6 4 34 34 H 1.09002 * 109.46901 * 329.99808 * 8 6 4 35 35 H 0.96998 * 119.99910 * 180.02562 * 16 15 13 36 36 H 1.09001 * 110.43225 * 351.18237 * 21 12 9 37 37 H 1.09004 * 110.89922 * 85.10665 * 22 21 12 38 38 H 1.08994 * 110.77138 * 321.62535 * 22 21 12 39 39 H 1.08994 * 110.49212 * 279.19066 * 23 22 21 40 40 H 1.08999 * 110.48545 * 156.67610 * 23 22 21 41 41 H 1.08993 * 110.03489 * 95.60559 * 24 23 22 42 42 H 1.09004 * 110.03085 * 216.99141 * 24 23 22 43 43 H 1.09009 * 110.03012 * 119.28676 * 25 24 23 44 44 H 1.09004 * 110.03663 * 240.66488 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3207 -1.8872 -1.1761 6 7 2.1609 -0.0380 -2.3915 7 6 2.6487 -0.7288 -3.5878 8 6 1.8130 1.3835 -2.4572 9 16 2.1347 -0.8552 1.4810 10 8 3.5214 -0.6079 1.6683 11 8 1.6107 -2.1746 1.5439 12 7 1.4053 -0.0657 2.7408 13 6 2.0727 0.9295 3.4036 14 1 1.6087 1.8957 3.5359 15 6 3.3458 0.6964 3.9056 16 7 4.1898 1.6960 4.0492 17 14 3.8609 -1.0362 4.3773 18 1 4.5736 -1.6682 3.2380 19 1 4.7628 -0.9808 5.5559 20 1 2.6562 -1.8368 4.7130 21 6 0.0459 -0.4318 3.1461 22 6 -0.8368 0.8366 3.2935 23 6 -1.9484 0.3635 4.2629 24 6 -1.2153 -0.5495 5.2673 25 6 0.0527 -1.0552 4.5572 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.9759 -1.5506 -3.8327 30 1 2.6858 -0.0283 -4.4220 31 1 3.6479 -1.1213 -3.3987 32 1 2.6920 1.9840 -2.2228 33 1 1.4642 1.6263 -3.4609 34 1 1.0238 1.5980 -1.7365 35 1 5.0795 1.5331 4.3996 36 1 -0.3928 -1.1225 2.4261 37 1 -1.2608 1.1290 2.3329 38 1 -0.2662 1.6560 3.7306 39 1 -2.7114 -0.1978 3.7236 40 1 -2.3943 1.2151 4.7766 41 1 -0.9437 0.0173 6.1578 42 1 -1.8519 -1.3911 5.5404 43 1 0.9397 -0.7337 5.1032 44 1 0.0323 -2.1427 4.4859 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408386329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:06 Heat of formation + Delta-G solvation = -90.849521 kcal Electronic energy + Delta-G solvation = -27600.547632 eV Core-core repulsion = 23873.873327 eV Total energy + Delta-G solvation = -3726.674305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.68051 -38.07576 -35.77876 -35.44863 -34.55727 -34.10062 -32.83554 -31.86384 -28.21615 -27.95736 -27.09367 -26.26171 -24.15942 -23.73610 -20.19545 -19.65060 -19.41910 -18.78417 -17.25548 -16.88471 -16.30986 -16.01686 -15.62447 -15.37769 -14.82468 -14.63626 -14.42741 -13.99453 -13.53858 -13.23019 -13.07433 -12.82141 -12.77087 -12.69537 -12.54463 -12.34924 -11.97791 -11.89476 -11.81494 -11.56585 -11.46022 -11.23233 -10.87764 -10.66660 -10.60087 -10.52008 -10.30339 -10.11785 -10.04289 -9.88004 -9.69302 -9.63047 -9.20545 -8.75370 -8.64869 -7.85244 -6.68472 -4.28689 1.46656 2.80010 3.11921 3.32724 3.47367 3.58582 3.99793 4.37426 4.64479 4.80621 5.02572 5.08745 5.10212 5.18445 5.20622 5.27866 5.30692 5.39431 5.47645 5.60329 5.65873 5.73314 5.78369 5.86037 5.90033 5.97072 6.05364 6.11434 6.11551 6.20472 6.29494 6.37752 6.38323 6.49273 6.52466 6.72667 6.87061 6.93796 7.23764 7.33754 7.65372 8.06920 8.26386 8.85320 9.03909 10.31209 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.006772 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.537842 B = 4133.681200 C = 5032.296984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.649 4.649 3 H 0.138 0.862 4 C 0.543 3.457 5 O -0.535 6.535 6 N -0.621 5.621 7 C 0.088 3.912 8 C 0.074 3.926 9 S 2.459 3.541 10 O -0.952 6.952 11 O -0.980 6.980 12 N -0.820 5.820 13 C -0.255 4.255 14 H 0.099 0.901 15 C 0.105 3.895 16 N -0.799 5.799 17 Si 0.849 3.151 18 H -0.239 1.239 19 H -0.286 1.286 20 H -0.249 1.249 21 C 0.155 3.845 22 C -0.136 4.136 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.133 4.133 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.285 0.715 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.085 0.915 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.319 3.112 -6.461 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.746 4.746 3 H 0.156 0.844 4 C 0.330 3.670 5 O -0.412 6.412 6 N -0.356 5.356 7 C -0.055 4.055 8 C -0.069 4.069 9 S 2.561 3.439 10 O -0.941 6.941 11 O -0.969 6.969 12 N -0.643 5.643 13 C -0.406 4.406 14 H 0.116 0.884 15 C -0.115 4.115 16 N -0.433 5.433 17 Si 0.674 3.326 18 H -0.163 1.163 19 H -0.213 1.213 20 H -0.172 1.172 21 C 0.047 3.953 22 C -0.175 4.175 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.172 4.172 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.468 1.650 -6.757 10.958 hybrid contribution 0.283 -0.019 -0.463 0.543 sum -8.185 1.631 -7.220 11.036 Atomic orbital electron populations 1.21481 0.89519 1.03344 1.03694 1.31381 1.07493 1.16277 1.19460 0.84381 1.19963 0.76787 0.86493 0.83729 1.90791 1.49921 1.15601 1.84893 1.47747 1.66518 1.11178 1.10119 1.21627 1.00036 0.97453 0.86356 1.21929 1.01444 0.80596 1.02888 1.14707 0.77176 0.77736 0.74265 1.93422 1.32233 1.85893 1.82510 1.93348 1.80431 1.38235 1.84914 1.53342 1.23429 1.51826 1.35654 1.18831 0.98769 0.93979 1.29065 0.88354 1.25835 0.95179 0.98593 0.91894 1.69829 1.05687 1.33682 1.34099 0.87312 0.81105 0.85209 0.79020 1.16327 1.21326 1.17243 1.21706 0.82796 0.94800 0.96014 1.23011 0.96279 0.99565 0.98650 1.22284 0.97541 0.98823 0.97403 1.22062 0.96597 0.98598 0.98399 1.22537 0.98653 0.99646 0.96377 0.92210 0.91407 0.89515 0.92167 0.90767 0.92070 0.92245 0.91130 0.90167 0.90527 0.90109 0.92168 0.89133 0.92275 0.92155 0.91992 0.92679 0.89668 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 8.02 37.15 0.30 -1.66 16 2 C -0.65 -12.80 2.55 -27.88 -0.07 -12.88 16 3 H 0.14 2.48 6.92 -51.92 -0.36 2.12 16 4 C 0.54 11.15 6.80 -10.98 -0.07 11.07 16 5 O -0.54 -13.13 15.70 -3.97 -0.06 -13.20 16 6 N -0.62 -9.79 3.27 -189.52 -0.62 -10.41 16 7 C 0.09 1.13 10.16 59.85 0.61 1.74 16 8 C 0.07 0.86 9.84 59.85 0.59 1.45 16 9 S 2.46 61.62 3.38 -107.50 -0.36 61.26 16 10 O -0.95 -27.24 12.29 -57.54 -0.71 -27.94 16 11 O -0.98 -26.73 16.39 -62.65 -1.03 -27.76 16 12 N -0.82 -18.46 1.82 -51.64 -0.09 -18.55 16 13 C -0.25 -6.14 8.04 -15.06 -0.12 -6.26 16 14 H 0.10 2.31 6.75 -52.49 -0.35 1.96 16 15 C 0.11 2.78 4.37 -17.43 -0.08 2.70 16 16 N -0.80 -21.36 13.97 55.49 0.78 -20.59 16 17 Si 0.85 22.04 24.66 -169.99 -4.19 17.84 16 18 H -0.24 -6.82 6.15 56.52 0.35 -6.47 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.25 -6.17 5.91 56.52 0.33 -5.83 16 21 C 0.15 2.93 1.83 -66.09 -0.12 2.81 16 22 C -0.14 -2.08 5.98 -24.55 -0.15 -2.23 16 23 C -0.12 -1.60 6.82 -25.07 -0.17 -1.77 16 24 C -0.12 -1.71 6.80 -25.61 -0.17 -1.88 16 25 C -0.13 -2.46 6.05 -25.61 -0.16 -2.61 16 26 H 0.06 0.77 6.84 -51.93 -0.36 0.41 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.09 1.27 4.30 -51.92 -0.22 1.05 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.66 7.79 -51.93 -0.40 0.26 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.59 7.92 -51.93 -0.41 0.17 16 34 H 0.08 0.90 5.17 -51.93 -0.27 0.63 16 35 H 0.28 7.20 8.31 -40.82 -0.34 6.87 16 36 H 0.08 1.50 6.66 -51.93 -0.35 1.15 16 37 H 0.06 0.80 6.42 -51.93 -0.33 0.47 16 38 H 0.09 1.49 6.25 -51.93 -0.32 1.17 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 1.75 5.61 -51.92 -0.29 1.45 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -33.80 340.14 -7.51 -41.31 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.73 Total: 2.43 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 0.38 Total: -9.52 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.06 Total: -49.55 kcal Atomic # 8 Polarization: -67.11 SS G_CDS: -1.80 Total: -68.90 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.19 Total: 17.84 kcal Atomic # 16 Polarization: 61.62 SS G_CDS: -0.36 Total: 61.26 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.80 -7.51 -41.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408386329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.538 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds