Wall clock time and date at job start Fri Apr 10 2020 18:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46964 * 84.99935 * 3 2 1 5 5 H 1.08004 * 119.99711 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99968 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00248 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99858 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47477 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47250 * 120.00270 * 8 6 4 11 11 H 1.48506 * 109.47052 * 239.99610 * 8 6 4 12 12 S 1.65597 * 119.99791 * 180.28225 * 2 1 3 13 13 O 1.42101 * 106.40154 * 203.53789 * 12 2 1 14 14 O 1.42106 * 106.40098 * 336.45446 * 12 2 1 15 15 N 1.65596 * 107.22389 * 89.99756 * 12 2 1 16 16 C 1.47422 * 125.64891 * 90.02001 * 15 12 2 17 17 C 1.54916 * 104.83284 * 204.09921 * 16 15 12 18 18 C 1.55157 * 101.57795 * 322.99155 * 17 16 15 19 19 H 1.09006 * 110.71667 * 276.95965 * 18 17 16 20 20 C 1.53001 * 110.71938 * 153.87025 * 18 17 16 21 21 H 1.08995 * 110.79827 * 305.07697 * 20 18 17 22 22 C 1.54813 * 110.90756 * 181.45416 * 20 18 17 23 23 C 1.54104 * 104.18539 * 220.91991 * 22 20 18 24 24 O 1.43739 * 107.29348 * 357.96717 * 23 22 20 25 25 C 1.44383 * 106.98030 * 26.51725 * 24 23 22 26 26 C 1.47022 * 125.64561 * 269.72172 * 15 12 2 27 27 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 28 28 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 29 29 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 30 30 H 1.08990 * 109.47572 * 205.00129 * 3 2 1 31 31 H 1.09003 * 109.47280 * 325.00485 * 3 2 1 32 32 H 0.97000 * 120.00205 * 179.97438 * 7 6 4 33 33 H 1.09000 * 110.36595 * 322.93396 * 16 15 12 34 34 H 1.08998 * 110.36922 * 85.26031 * 16 15 12 35 35 H 1.08991 * 111.00596 * 81.06304 * 17 16 15 36 36 H 1.09002 * 111.00042 * 204.88016 * 17 16 15 37 37 H 1.09003 * 110.48838 * 339.58817 * 22 20 18 38 38 H 1.08996 * 110.49263 * 102.10670 * 22 20 18 39 39 H 1.08996 * 109.87928 * 117.39134 * 23 22 20 40 40 H 1.09004 * 109.87703 * 238.39294 * 23 22 20 41 41 H 1.08990 * 110.61985 * 201.44064 * 25 24 23 42 42 H 1.09004 * 110.62011 * 78.43170 * 25 24 23 43 43 H 1.09001 * 109.88516 * 298.38375 * 26 15 12 44 44 H 1.08997 * 109.88796 * 59.55682 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 1 1.9289 1.1933 2.2332 6 6 2.9998 2.9507 1.6664 7 7 3.5018 3.6478 0.6706 8 14 3.1788 3.5663 3.4210 9 1 2.5313 2.6065 4.3508 10 1 4.6199 3.6876 3.7584 11 1 2.5272 4.8946 3.5484 12 16 2.2930 -1.4341 -0.0071 13 8 3.5760 -1.1595 0.5387 14 8 1.4113 -2.4091 0.5327 15 7 2.5381 -1.8510 -1.5908 16 6 3.7029 -1.4687 -2.4096 17 6 3.1988 -1.5369 -3.8728 18 6 2.2556 -2.7677 -3.8202 19 1 2.8225 -3.6927 -3.9263 20 6 1.1767 -2.6695 -4.9006 21 1 0.6307 -1.7298 -4.8180 22 6 0.2113 -3.8776 -4.8287 23 6 -0.0333 -4.2538 -6.3030 24 8 0.6880 -3.3085 -7.1105 25 6 1.7929 -2.8298 -6.3138 26 6 1.6330 -2.6689 -2.4115 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3633 0.8925 -0.5094 29 1 -0.3633 -0.8875 -0.5181 30 1 3.1858 1.1177 -0.4343 31 1 1.6502 2.0043 -0.5894 32 1 3.9646 4.4818 0.8471 33 1 4.0223 -0.4556 -2.1652 34 1 4.5212 -2.1725 -2.2571 35 1 2.6487 -0.6343 -4.1389 36 1 4.0251 -1.7062 -4.5632 37 1 0.6766 -4.7067 -4.2956 38 1 -0.7230 -3.5912 -4.3459 39 1 0.3348 -5.2617 -6.4943 40 1 -1.0986 -4.1997 -6.5274 41 1 2.1488 -1.8702 -6.6884 42 1 2.6010 -3.5612 -6.2994 43 1 1.5353 -3.6636 -1.9766 44 1 0.6551 -2.1913 -2.4732 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408425453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:11 Heat of formation + Delta-G solvation = -146.802942 kcal Electronic energy + Delta-G solvation = -26095.728759 eV Core-core repulsion = 22366.628132 eV Total energy + Delta-G solvation = -3729.100628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76115 -38.98155 -38.34622 -37.25069 -36.90026 -34.53658 -34.20751 -31.45048 -30.03390 -29.68415 -28.83413 -26.82238 -24.32812 -23.75936 -23.58571 -22.30294 -20.94415 -19.98971 -19.04661 -18.52576 -18.27000 -17.61517 -17.16201 -16.85251 -16.48688 -16.35828 -15.69515 -15.21896 -15.14074 -14.82859 -14.67845 -14.24956 -14.11634 -14.08058 -13.98949 -13.53363 -13.41003 -13.32392 -13.23742 -13.08123 -12.99608 -12.87359 -12.51680 -12.50827 -12.39212 -12.34963 -12.00942 -11.80088 -11.76618 -11.61593 -11.44436 -11.36282 -10.62669 -10.56525 -10.06235 -9.80664 -8.23084 -6.34997 -0.43763 1.36721 1.39126 1.50890 2.00682 2.38063 2.56177 3.06268 3.07475 3.15689 3.50146 3.62806 3.73170 3.92435 4.00416 4.15427 4.22625 4.32982 4.35851 4.46552 4.56107 4.58574 4.62756 4.64637 4.75999 4.85472 4.88639 4.94636 4.95738 4.98839 5.00240 5.06013 5.11754 5.13785 5.18328 5.26938 5.33597 5.45124 5.51764 5.67421 5.90693 5.99831 6.07801 6.72833 7.33968 8.84632 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.003408 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.307972 B = 8214.394663 C = 8487.772482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -1.005 6.005 3 C 0.274 3.726 4 C -0.551 4.551 5 H 0.049 0.951 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.956 3.044 9 H -0.272 1.272 10 H -0.278 1.278 11 H -0.268 1.268 12 S 2.806 3.194 13 O -1.006 7.006 14 O -1.005 7.005 15 N -1.021 6.021 16 C 0.110 3.890 17 C -0.117 4.117 18 C -0.073 4.073 19 H 0.105 0.895 20 C -0.107 4.107 21 H 0.084 0.916 22 C -0.154 4.154 23 C 0.043 3.957 24 O -0.407 6.407 25 C 0.052 3.948 26 C 0.117 3.883 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.016 0.984 31 H 0.028 0.972 32 H 0.268 0.732 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 -14.451 -15.546 21.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.846 5.846 3 C 0.150 3.850 4 C -0.591 4.591 5 H 0.067 0.933 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.196 1.196 10 H -0.203 1.203 11 H -0.193 1.193 12 S 2.816 3.184 13 O -0.990 6.990 14 O -0.990 6.990 15 N -0.862 5.862 16 C -0.015 4.015 17 C -0.155 4.155 18 C -0.093 4.093 19 H 0.124 0.876 20 C -0.126 4.126 21 H 0.103 0.897 22 C -0.192 4.192 23 C -0.034 4.034 24 O -0.326 6.326 25 C -0.024 4.024 26 C -0.008 4.008 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.991 -14.699 -14.925 21.534 hybrid contribution 0.149 0.852 1.139 1.430 sum -4.842 -13.847 -13.786 20.131 Atomic orbital electron populations 1.21436 0.78061 1.03185 1.01762 1.57660 1.15726 1.22223 1.89008 1.18624 0.90330 0.80132 0.95886 1.21847 1.36353 1.06721 0.94159 0.93293 1.25729 0.94708 0.96683 1.01512 1.69999 1.37803 1.15689 1.32662 0.85538 0.78116 0.78434 0.79815 1.19607 1.20339 1.19312 1.00943 0.72269 0.72279 0.72878 1.93558 1.42797 1.85533 1.77090 1.93497 1.67496 1.60384 1.77576 1.59020 1.31699 1.65602 1.29929 1.22198 0.87631 1.00073 0.91626 1.22886 1.00115 0.98447 0.94100 1.22173 0.95789 1.00001 0.91349 0.87640 1.22699 0.95791 0.99698 0.94453 0.89742 1.23063 1.00678 0.98456 0.96975 1.23268 0.97559 0.92830 0.89715 1.88848 1.42903 1.60895 1.39974 1.23704 0.89430 1.00462 0.88846 1.22001 0.92785 0.94750 0.91284 0.93767 0.90232 0.90098 0.96613 0.95358 0.92279 0.92475 0.90458 0.90446 0.87134 0.89308 0.89862 0.91576 0.89503 0.88319 0.90742 0.90887 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.44 10.33 127.77 1.32 4.76 16 2 N -1.00 -42.60 3.23 -543.22 -1.75 -44.35 16 3 C 0.27 14.06 5.12 85.63 0.44 14.50 16 4 C -0.55 -31.81 9.38 25.60 0.24 -31.57 16 5 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 6 C 0.01 0.76 5.46 84.65 0.46 1.23 16 7 N -0.92 -54.03 13.29 21.44 0.28 -53.75 16 8 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 S 2.81 114.74 6.26 -56.49 -0.35 114.39 16 13 O -1.01 -50.24 16.70 -128.00 -2.14 -52.37 16 14 O -1.01 -42.22 16.79 -128.00 -2.15 -44.37 16 15 N -1.02 -30.50 3.75 -506.40 -1.90 -32.40 16 16 C 0.11 2.83 6.98 86.86 0.61 3.44 16 17 C -0.12 -1.96 6.24 31.99 0.20 -1.76 16 18 C -0.07 -1.09 2.31 -9.60 -0.02 -1.11 16 19 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 20 C -0.11 -1.43 2.46 -9.49 -0.02 -1.45 16 21 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 22 C -0.15 -1.81 6.18 31.59 0.20 -1.61 16 23 C 0.04 0.56 7.70 72.36 0.56 1.11 16 24 O -0.41 -7.40 11.52 -148.98 -1.72 -9.12 16 25 C 0.05 0.69 6.88 72.67 0.50 1.19 16 26 C 0.12 2.51 6.18 86.73 0.54 3.04 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 2.48 7.94 -2.39 -0.02 2.46 16 29 H 0.08 2.22 7.79 -2.39 -0.02 2.20 16 30 H 0.02 0.87 7.61 -2.39 -0.02 0.85 16 31 H 0.03 1.47 7.96 -2.39 -0.02 1.45 16 32 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.37 8.05 -2.39 -0.02 1.35 16 36 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 0.88 7.86 -2.39 -0.02 0.86 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 0.81 8.05 -2.39 -0.02 0.79 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.41 7.82 -2.39 -0.02 1.39 16 Total: -1.00 -74.51 366.35 -1.73 -76.24 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.96 Total: 6.91 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 5.01 Total: -8.23 kcal Atomic # 7 Polarization: -127.13 SS G_CDS: -3.37 Total: -130.49 kcal Atomic # 8 Polarization: -99.85 SS G_CDS: -6.00 Total: -105.86 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 114.74 SS G_CDS: -0.35 Total: 114.39 kcal Total: -74.51 -1.73 -76.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408425453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.568 kcal (2) G-P(sol) polarization free energy of solvation -74.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds