Wall clock time and date at job start Fri Apr 10 2020 18:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99972 * 2 1 4 4 C 1.50694 * 109.47115 * 275.00101 * 3 2 1 5 5 H 1.08000 * 120.00563 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99902 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 3 9 9 H 1.48498 * 109.46909 * 90.00086 * 8 6 4 10 10 H 1.48497 * 109.46701 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00101 * 8 6 4 12 12 S 1.65601 * 119.99689 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40391 * 23.53795 * 12 2 1 14 14 O 1.42104 * 106.39868 * 156.45798 * 12 2 1 15 15 N 1.65595 * 107.22002 * 269.99806 * 12 2 1 16 16 C 1.47023 * 125.64947 * 269.69523 * 15 12 2 17 17 C 1.54335 * 107.26914 * 178.84698 * 16 15 12 18 18 C 1.55162 * 103.01836 * 338.13881 * 17 16 15 19 19 H 1.08998 * 111.04229 * 277.21988 * 18 17 16 20 20 C 1.53001 * 111.00261 * 153.37577 * 18 17 16 21 21 H 1.08999 * 110.75562 * 307.10883 * 20 18 17 22 22 C 1.55307 * 110.84684 * 70.57965 * 20 18 17 23 23 C 1.55205 * 100.82690 * 152.17929 * 22 20 18 24 24 O 1.43651 * 105.25956 * 323.81538 * 23 22 20 25 25 C 1.43234 * 109.96850 * 24.28780 * 24 23 22 26 26 C 1.47429 * 125.65071 * 90.00198 * 15 12 2 27 27 H 1.09004 * 109.47495 * 89.99963 * 1 2 3 28 28 H 1.09001 * 109.46919 * 209.99630 * 1 2 3 29 29 H 1.09001 * 109.47244 * 330.00033 * 1 2 3 30 30 H 1.08998 * 109.46734 * 155.00217 * 3 2 1 31 31 H 1.09002 * 109.47081 * 34.99989 * 3 2 1 32 32 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 33 33 H 1.08993 * 109.88259 * 298.39736 * 16 15 12 34 34 H 1.09011 * 109.88162 * 59.56205 * 16 15 12 35 35 H 1.08999 * 110.85239 * 219.67537 * 17 16 15 36 36 H 1.08996 * 110.51484 * 96.45141 * 17 16 15 37 37 H 1.08994 * 111.12396 * 270.24269 * 22 20 18 38 38 H 1.09002 * 111.12475 * 34.40523 * 22 20 18 39 39 H 1.09005 * 110.36948 * 204.80370 * 23 22 20 40 40 H 1.08992 * 110.21515 * 82.75395 * 23 22 20 41 41 H 1.09006 * 109.82778 * 238.77011 * 25 24 23 42 42 H 1.09000 * 109.83110 * 117.80120 * 25 24 23 43 43 H 1.09004 * 110.36286 * 322.93096 * 26 15 12 44 44 H 1.08990 * 110.36580 * 85.24975 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4153 5 1 1.9282 1.1939 -2.2331 6 6 2.9997 2.9509 -1.6663 7 7 3.5025 3.6475 -0.6704 8 14 3.1848 3.5631 -3.4214 9 1 2.0246 4.4214 -3.7712 10 1 4.4376 4.3513 -3.5412 11 1 3.2394 2.4031 -4.3470 12 16 2.2930 -1.4342 -0.0006 13 8 1.4113 -2.4063 -0.5455 14 8 3.5759 -1.1566 -0.5450 15 7 2.5381 -1.8594 1.5809 16 6 3.7027 -1.4875 2.3976 17 6 3.4829 -2.0800 3.8056 18 6 1.9454 -2.2807 3.8643 19 1 1.4398 -1.3540 4.1354 20 6 1.5759 -3.4070 4.8317 21 1 2.1254 -4.3175 4.5924 22 6 1.8308 -2.9781 6.3025 23 6 0.7824 -3.8483 7.0457 24 8 -0.3569 -3.8964 6.1720 25 6 0.0538 -3.6646 4.8195 26 6 1.6278 -2.6791 2.4013 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 3.1858 1.1176 0.4343 31 1 1.6501 2.0043 0.5895 32 1 3.9653 4.4815 -0.8470 33 1 4.6108 -1.8993 1.9576 34 1 3.7787 -0.4019 2.4621 35 1 3.8102 -1.3816 4.5759 36 1 4.0004 -3.0342 3.9036 37 1 2.8450 -3.2274 6.6142 38 1 1.6285 -1.9162 6.4427 39 1 0.5114 -3.3872 7.9956 40 1 1.1748 -4.8515 7.2112 41 1 -0.4654 -2.7937 4.4195 42 1 -0.1680 -4.5409 4.2104 43 1 0.5898 -2.4479 2.1621 44 1 1.8270 -3.7391 2.2449 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408425454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:15 Heat of formation + Delta-G solvation = -121.761736 kcal Electronic energy + Delta-G solvation = -26068.561008 eV Core-core repulsion = 22340.546248 eV Total energy + Delta-G solvation = -3728.014759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.05722 -38.10213 -36.63673 -35.49440 -35.16732 -33.42936 -32.44381 -30.33256 -29.87626 -27.83764 -27.65595 -25.08345 -23.44300 -22.33379 -22.21376 -21.62656 -20.34468 -18.58129 -17.44021 -17.02564 -16.79608 -16.37873 -16.24326 -15.60787 -15.29702 -14.80187 -14.43475 -14.30630 -13.66888 -13.61979 -13.38180 -13.32893 -13.14210 -12.70187 -12.52799 -12.35413 -12.24854 -12.11199 -11.75464 -11.64305 -11.48044 -11.27305 -11.20789 -11.18762 -11.10987 -10.87434 -10.78119 -10.71952 -10.67758 -10.53599 -10.02410 -9.78233 -9.77867 -8.85932 -8.44838 -8.07174 -6.07549 -4.11282 1.12896 3.31154 3.37342 3.43133 3.47784 3.60635 3.97589 4.09889 4.28356 4.42442 4.44909 4.60008 4.73050 4.86534 4.92479 5.02624 5.09011 5.21208 5.26253 5.27437 5.35964 5.39865 5.46353 5.51406 5.56920 5.59915 5.61884 5.74141 5.84064 5.85243 5.97904 6.03842 6.12699 6.20542 6.35543 6.44065 6.61422 6.72030 7.18982 7.37468 7.58594 7.90022 8.19295 8.90911 9.53905 11.01070 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023746 B = 0.003369 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.855606 B = 8308.609719 C = 8482.416783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.997 5.997 3 C 0.258 3.742 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.792 3.208 13 O -0.993 6.993 14 O -0.958 6.958 15 N -1.024 6.024 16 C 0.120 3.880 17 C -0.120 4.120 18 C -0.091 4.091 19 H 0.091 0.909 20 C -0.112 4.112 21 H 0.089 0.911 22 C -0.150 4.150 23 C 0.050 3.950 24 O -0.386 6.386 25 C 0.052 3.948 26 C 0.127 3.873 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.264 0.736 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 -13.058 15.787 20.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.840 5.840 3 C 0.136 3.864 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.802 3.198 13 O -0.977 6.977 14 O -0.942 6.942 15 N -0.862 5.862 16 C -0.006 4.006 17 C -0.159 4.159 18 C -0.111 4.111 19 H 0.109 0.891 20 C -0.131 4.131 21 H 0.107 0.893 22 C -0.187 4.187 23 C -0.027 4.027 24 O -0.306 6.306 25 C -0.025 4.025 26 C 0.001 3.999 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.281 -13.384 15.013 20.378 hybrid contribution 0.267 0.782 -0.733 1.104 sum -3.014 -12.602 14.280 19.283 Atomic orbital electron populations 1.21208 0.80069 1.01005 1.01478 1.57744 1.14293 1.23508 1.88407 1.19061 0.90915 0.78694 0.97705 1.21491 1.36051 1.06313 0.92944 0.92206 1.24932 0.95064 0.96489 0.97532 1.69916 1.37411 1.15267 1.30952 0.86507 0.77538 0.78831 0.84660 1.20594 1.21025 1.19683 1.01688 0.73456 0.72683 0.71990 1.93533 1.67443 1.60571 1.76122 1.93623 1.40587 1.84877 1.75096 1.59447 1.29955 1.65639 1.31172 1.21671 0.88280 1.00275 0.90324 1.22671 0.95100 1.01606 0.96518 1.22406 0.96796 0.98220 0.93640 0.89085 1.22723 0.96300 0.99010 0.95045 0.89282 1.23357 1.00147 1.01141 0.94090 1.23410 0.86122 0.99065 0.94059 1.88408 1.31663 1.93441 1.17068 1.23262 0.93845 1.01358 0.83993 1.21944 0.93503 0.95046 0.89379 0.93083 0.93175 0.91480 0.94567 0.94786 0.92692 0.91206 0.91154 0.90079 0.90728 0.89721 0.90002 0.89858 0.92330 0.90803 0.91173 0.90987 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.89 10.33 59.85 0.62 2.51 16 2 N -1.00 -20.95 3.23 -123.05 -0.40 -21.35 16 3 C 0.26 6.48 5.12 -5.20 -0.03 6.45 16 4 C -0.53 -14.98 9.38 -34.44 -0.32 -15.30 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 S 2.79 56.72 6.26 -107.50 -0.67 56.04 16 13 O -0.99 -21.05 16.80 -57.17 -0.96 -22.01 16 14 O -0.96 -23.27 16.69 -57.17 -0.95 -24.22 16 15 N -1.02 -15.69 3.75 -111.41 -0.42 -16.10 16 16 C 0.12 1.60 6.99 -3.06 -0.02 1.58 16 17 C -0.12 -1.10 6.18 -24.89 -0.15 -1.26 16 18 C -0.09 -0.83 2.37 -88.47 -0.21 -1.04 16 19 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 20 C -0.11 -0.84 2.46 -88.67 -0.22 -1.06 16 21 H 0.09 0.62 8.13 -51.93 -0.42 0.20 16 22 C -0.15 -0.98 6.40 -24.34 -0.16 -1.14 16 23 C 0.05 0.37 7.78 38.33 0.30 0.67 16 24 O -0.39 -4.00 11.36 -35.23 -0.40 -4.40 16 25 C 0.05 0.45 6.97 37.88 0.26 0.72 16 26 C 0.13 1.50 6.02 -2.52 -0.02 1.48 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.72 7.79 -51.93 -0.40 0.32 16 29 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 30 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 31 H 0.03 0.86 7.96 -51.93 -0.41 0.45 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.59 8.03 -51.93 -0.42 0.18 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.55 8.04 -51.93 -0.42 0.14 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.65 7.81 -51.93 -0.41 0.24 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.72 8.03 -51.93 -0.42 0.31 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -34.44 366.57 -10.08 -44.52 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -7.48 Total: -4.88 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.04 Total: -4.71 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -0.08 Total: -62.79 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -2.31 Total: -50.63 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 56.72 SS G_CDS: -0.67 Total: 56.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.44 -10.08 -44.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408425454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.242 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds