Wall clock time and date at job start Fri Apr 10 2020 18:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99972 * 2 1 4 4 C 1.50694 * 109.47115 * 275.00101 * 3 2 1 5 5 H 1.08000 * 120.00563 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99902 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 3 9 9 H 1.48498 * 109.46909 * 90.00086 * 8 6 4 10 10 H 1.48497 * 109.46701 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00101 * 8 6 4 12 12 S 1.65601 * 119.99689 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40391 * 23.53795 * 12 2 1 14 14 O 1.42104 * 106.39868 * 156.45798 * 12 2 1 15 15 N 1.65595 * 107.22002 * 269.99806 * 12 2 1 16 16 C 1.47023 * 125.64947 * 269.69523 * 15 12 2 17 17 C 1.54335 * 107.26914 * 178.84698 * 16 15 12 18 18 C 1.55162 * 103.01836 * 338.13881 * 17 16 15 19 19 H 1.08998 * 111.04229 * 277.21988 * 18 17 16 20 20 C 1.53001 * 111.00261 * 153.37577 * 18 17 16 21 21 H 1.08999 * 110.75562 * 307.10883 * 20 18 17 22 22 C 1.55307 * 110.84684 * 70.57965 * 20 18 17 23 23 C 1.55205 * 100.82690 * 152.17929 * 22 20 18 24 24 O 1.43651 * 105.25956 * 323.81538 * 23 22 20 25 25 C 1.43234 * 109.96850 * 24.28780 * 24 23 22 26 26 C 1.47429 * 125.65071 * 90.00198 * 15 12 2 27 27 H 1.09004 * 109.47495 * 89.99963 * 1 2 3 28 28 H 1.09001 * 109.46919 * 209.99630 * 1 2 3 29 29 H 1.09001 * 109.47244 * 330.00033 * 1 2 3 30 30 H 1.08998 * 109.46734 * 155.00217 * 3 2 1 31 31 H 1.09002 * 109.47081 * 34.99989 * 3 2 1 32 32 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 33 33 H 1.08993 * 109.88259 * 298.39736 * 16 15 12 34 34 H 1.09011 * 109.88162 * 59.56205 * 16 15 12 35 35 H 1.08999 * 110.85239 * 219.67537 * 17 16 15 36 36 H 1.08996 * 110.51484 * 96.45141 * 17 16 15 37 37 H 1.08994 * 111.12396 * 270.24269 * 22 20 18 38 38 H 1.09002 * 111.12475 * 34.40523 * 22 20 18 39 39 H 1.09005 * 110.36948 * 204.80370 * 23 22 20 40 40 H 1.08992 * 110.21515 * 82.75395 * 23 22 20 41 41 H 1.09006 * 109.82778 * 238.77011 * 25 24 23 42 42 H 1.09000 * 109.83110 * 117.80120 * 25 24 23 43 43 H 1.09004 * 110.36286 * 322.93096 * 26 15 12 44 44 H 1.08990 * 110.36580 * 85.24975 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4153 5 1 1.9282 1.1939 -2.2331 6 6 2.9997 2.9509 -1.6663 7 7 3.5025 3.6475 -0.6704 8 14 3.1848 3.5631 -3.4214 9 1 2.0246 4.4214 -3.7712 10 1 4.4376 4.3513 -3.5412 11 1 3.2394 2.4031 -4.3470 12 16 2.2930 -1.4342 -0.0006 13 8 1.4113 -2.4063 -0.5455 14 8 3.5759 -1.1566 -0.5450 15 7 2.5381 -1.8594 1.5809 16 6 3.7027 -1.4875 2.3976 17 6 3.4829 -2.0800 3.8056 18 6 1.9454 -2.2807 3.8643 19 1 1.4398 -1.3540 4.1354 20 6 1.5759 -3.4070 4.8317 21 1 2.1254 -4.3175 4.5924 22 6 1.8308 -2.9781 6.3025 23 6 0.7824 -3.8483 7.0457 24 8 -0.3569 -3.8964 6.1720 25 6 0.0538 -3.6646 4.8195 26 6 1.6278 -2.6791 2.4013 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 3.1858 1.1176 0.4343 31 1 1.6501 2.0043 0.5895 32 1 3.9653 4.4815 -0.8470 33 1 4.6108 -1.8993 1.9576 34 1 3.7787 -0.4019 2.4621 35 1 3.8102 -1.3816 4.5759 36 1 4.0004 -3.0342 3.9036 37 1 2.8450 -3.2274 6.6142 38 1 1.6285 -1.9162 6.4427 39 1 0.5114 -3.3872 7.9956 40 1 1.1748 -4.8515 7.2112 41 1 -0.4654 -2.7937 4.4195 42 1 -0.1680 -4.5409 4.2104 43 1 0.5898 -2.4479 2.1621 44 1 1.8270 -3.7391 2.2449 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408425454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:15 Heat of formation + Delta-G solvation = -146.926849 kcal Electronic energy + Delta-G solvation = -26069.652249 eV Core-core repulsion = 22340.546248 eV Total energy + Delta-G solvation = -3729.106001 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75721 -38.99316 -38.35184 -37.25380 -36.90470 -34.53658 -34.24646 -31.04653 -30.74450 -29.70532 -28.52155 -26.82467 -24.43924 -24.09962 -22.85658 -22.55419 -21.04245 -19.99605 -19.04862 -18.48001 -18.34093 -17.64486 -17.17704 -17.00828 -16.49004 -16.17543 -15.53591 -15.33927 -15.13781 -14.93112 -14.57947 -14.38975 -14.12847 -14.00221 -13.98802 -13.51215 -13.46020 -13.31392 -13.22724 -13.09113 -12.99133 -12.94863 -12.57746 -12.51551 -12.42230 -12.24191 -12.01245 -11.81084 -11.77583 -11.66238 -11.49118 -11.40000 -10.62197 -10.41935 -10.07123 -9.81430 -8.23136 -6.35078 -0.44568 1.37018 1.39364 1.50063 1.99819 2.37959 2.55729 3.00660 3.07472 3.17652 3.35707 3.68007 3.73306 3.87552 3.99280 4.14441 4.25284 4.33498 4.35234 4.42701 4.53066 4.56604 4.62859 4.64950 4.74311 4.86513 4.90382 4.92900 4.96487 4.99049 5.01700 5.04113 5.11248 5.13715 5.15249 5.29201 5.36288 5.44458 5.49268 5.67035 5.90342 6.07639 6.12400 6.72414 7.33741 8.84421 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023746 B = 0.003369 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.855606 B = 8308.609719 C = 8482.416783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.005 6.005 3 C 0.274 3.726 4 C -0.553 4.553 5 H 0.049 0.951 6 C 0.014 3.986 7 N -0.922 5.922 8 Si 0.956 3.044 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.276 1.276 12 S 2.806 3.194 13 O -1.005 7.005 14 O -1.006 7.006 15 N -1.020 6.020 16 C 0.108 3.892 17 C -0.107 4.107 18 C -0.079 4.079 19 H 0.089 0.911 20 C -0.103 4.103 21 H 0.101 0.899 22 C -0.143 4.143 23 C 0.043 3.957 24 O -0.413 6.413 25 C 0.047 3.953 26 C 0.114 3.886 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.016 0.984 31 H 0.029 0.971 32 H 0.268 0.732 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 -13.801 17.083 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.846 5.846 3 C 0.151 3.849 4 C -0.592 4.592 5 H 0.067 0.933 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.201 1.201 12 S 2.816 3.184 13 O -0.989 6.989 14 O -0.990 6.990 15 N -0.862 5.862 16 C -0.017 4.017 17 C -0.146 4.146 18 C -0.099 4.099 19 H 0.108 0.892 20 C -0.122 4.122 21 H 0.120 0.880 22 C -0.181 4.181 23 C -0.033 4.033 24 O -0.333 6.333 25 C -0.030 4.030 26 C -0.011 4.011 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.467 -14.133 16.306 21.855 hybrid contribution 0.282 0.944 -1.057 1.445 sum -3.184 -13.189 15.249 20.411 Atomic orbital electron populations 1.21448 0.78036 1.03223 1.01802 1.57661 1.15733 1.22206 1.89036 1.18616 0.90327 0.80113 0.95874 1.21821 1.36458 1.06760 0.94164 0.93302 1.25734 0.94671 0.96677 1.01527 1.69997 1.37745 1.15660 1.32739 0.85589 0.78269 0.78288 0.79789 1.18950 1.20112 1.20093 1.00955 0.72273 0.72289 0.72883 1.93504 1.67495 1.60553 1.77316 1.93554 1.42812 1.85474 1.77167 1.59008 1.31394 1.65645 1.30105 1.21922 0.87374 0.99781 0.92608 1.22679 0.95251 1.02809 0.93841 1.22326 0.96692 0.98806 0.92084 0.89231 1.22660 0.95570 0.98755 0.95244 0.88033 1.23350 1.00947 1.00884 0.92907 1.23597 0.85668 0.99985 0.94053 1.88381 1.33403 1.93599 1.17927 1.23328 0.94667 1.01367 0.83614 1.22328 0.93053 0.95199 0.90478 0.93746 0.90065 0.90193 0.96635 0.95338 0.92268 0.91736 0.92723 0.88077 0.88650 0.87742 0.90171 0.89114 0.91344 0.91266 0.90888 0.90568 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.44 10.33 127.77 1.32 4.76 16 2 N -1.00 -42.78 3.23 -543.22 -1.75 -44.53 16 3 C 0.27 14.13 5.12 85.63 0.44 14.57 16 4 C -0.55 -31.97 9.38 25.60 0.24 -31.73 16 5 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 6 C 0.01 0.78 5.46 84.66 0.46 1.24 16 7 N -0.92 -54.12 13.29 21.45 0.28 -53.84 16 8 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 9 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 S 2.81 115.40 6.26 -56.49 -0.35 115.05 16 13 O -1.00 -42.44 16.80 -128.00 -2.15 -44.59 16 14 O -1.01 -50.54 16.69 -128.00 -2.14 -52.68 16 15 N -1.02 -30.69 3.75 -506.39 -1.90 -32.59 16 16 C 0.11 2.83 6.99 86.73 0.61 3.43 16 17 C -0.11 -1.67 6.18 31.79 0.20 -1.47 16 18 C -0.08 -1.24 2.37 -9.40 -0.02 -1.26 16 19 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 20 C -0.10 -1.25 2.46 -9.53 -0.02 -1.27 16 21 H 0.10 1.03 8.13 -2.39 -0.02 1.01 16 22 C -0.14 -1.41 6.40 32.14 0.21 -1.20 16 23 C 0.04 0.53 7.78 72.74 0.57 1.09 16 24 O -0.41 -7.86 11.36 -148.98 -1.69 -9.55 16 25 C 0.05 0.72 6.97 72.45 0.51 1.23 16 26 C 0.11 2.47 6.02 86.86 0.52 3.00 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 2.24 7.79 -2.39 -0.02 2.22 16 29 H 0.08 2.50 7.94 -2.39 -0.02 2.48 16 30 H 0.02 0.86 7.61 -2.39 -0.02 0.84 16 31 H 0.03 1.48 7.96 -2.39 -0.02 1.46 16 32 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.15 8.03 -2.39 -0.02 1.13 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.84 8.04 -2.39 -0.02 0.82 16 39 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 1.11 7.81 -2.38 -0.02 1.09 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 43 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 44 H 0.08 1.54 8.03 -2.39 -0.02 1.52 16 Total: -1.00 -75.06 366.57 -1.69 -76.75 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 0.96 Total: 6.48 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 5.02 Total: -7.62 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -3.37 Total: -130.96 kcal Atomic # 8 Polarization: -100.83 SS G_CDS: -5.98 Total: -106.81 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 115.40 SS G_CDS: -0.35 Total: 115.05 kcal Total: -75.06 -1.69 -76.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408425454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.178 kcal (2) G-P(sol) polarization free energy of solvation -75.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds