Wall clock time and date at job start Fri Apr 10 2020 18:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 120.00101 * 2 1 4 4 H 1.09000 * 109.47719 * 0.02631 * 3 2 1 5 5 O 1.42902 * 109.48269 * 240.00276 * 3 2 1 6 6 C 1.42899 * 114.10060 * 178.86005 * 5 3 2 7 7 C 1.53090 * 109.41644 * 61.15491 * 6 5 3 8 8 C 1.53187 * 109.16372 * 302.39679 * 7 6 5 9 9 C 1.53095 * 109.48089 * 120.05686 * 3 2 1 10 10 H 1.09002 * 109.51702 * 57.68716 * 9 3 2 11 11 N 1.46500 * 109.52329 * 297.50075 * 9 3 2 12 12 S 1.65599 * 119.99849 * 145.85356 * 11 9 3 13 13 O 1.42092 * 106.40364 * 48.05616 * 12 11 9 14 14 O 1.42102 * 106.40005 * 180.97298 * 12 11 9 15 15 N 1.65603 * 107.22078 * 294.51082 * 12 11 9 16 16 C 1.46495 * 119.99692 * 92.93077 * 15 12 11 17 17 C 1.46503 * 119.99874 * 272.93361 * 15 12 11 18 18 H 1.08997 * 109.46979 * 359.97438 * 17 15 12 19 19 C 1.53002 * 109.46689 * 239.99402 * 17 15 12 20 20 C 1.50702 * 109.46782 * 120.00059 * 17 15 12 21 21 H 1.07996 * 120.00472 * 28.74955 * 20 17 15 22 22 C 1.37878 * 119.99791 * 208.75097 * 20 17 15 23 23 N 1.31513 * 120.00193 * 181.82948 * 22 20 17 24 24 Si 1.86807 * 119.99881 * 1.83297 * 22 20 17 25 25 H 1.48492 * 109.47138 * 89.17525 * 24 22 20 26 26 H 1.48497 * 109.46753 * 209.17512 * 24 22 20 27 27 H 1.48499 * 109.46795 * 329.17576 * 24 22 20 28 28 H 1.08003 * 119.99741 * 179.72631 * 1 2 3 29 29 H 1.07996 * 120.00336 * 359.72443 * 1 2 3 30 30 H 1.08000 * 120.00402 * 180.28114 * 2 1 3 31 31 H 1.08999 * 109.48313 * 181.14049 * 6 5 3 32 32 H 1.09002 * 109.47981 * 301.17757 * 6 5 3 33 33 H 1.08996 * 109.52371 * 62.29898 * 7 6 5 34 34 H 1.08997 * 109.52284 * 182.42937 * 7 6 5 35 35 H 1.08994 * 109.54207 * 176.84944 * 8 7 6 36 36 H 1.09006 * 109.53744 * 297.02099 * 8 7 6 37 37 H 0.97001 * 119.99750 * 325.85775 * 11 9 3 38 38 H 1.09007 * 109.47002 * 89.99998 * 16 15 12 39 39 H 1.08999 * 109.46977 * 209.99865 * 16 15 12 40 40 H 1.08999 * 109.47544 * 330.00492 * 16 15 12 41 41 H 1.09004 * 109.46612 * 63.12943 * 19 17 15 42 42 H 1.09000 * 109.46708 * 183.12508 * 19 17 15 43 43 H 1.08998 * 109.47521 * 303.12682 * 19 17 15 44 44 H 0.97000 * 120.00051 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3553 2.1337 0.0005 5 8 2.8851 1.3811 -1.1667 6 6 3.6276 2.5969 -1.2794 7 6 4.5717 2.7295 -0.0817 8 6 3.7522 2.6869 1.2118 9 6 2.9448 1.3858 1.2492 10 1 3.6259 0.5350 1.2700 11 7 2.1003 1.3679 2.4462 12 16 2.6359 0.6258 3.8263 13 8 3.9589 1.0949 4.0466 14 8 1.5944 0.7594 4.7838 15 7 2.7623 -0.9920 3.4957 16 6 4.0374 -1.5482 3.0363 17 6 1.5991 -1.8668 3.6625 18 1 0.7491 -1.2789 4.0088 19 6 1.9209 -2.9524 4.6914 20 6 1.2611 -2.5102 2.3423 21 1 2.0383 -2.6893 1.6142 22 6 -0.0404 -2.8703 2.0641 23 7 -0.3297 -3.4645 0.9271 24 14 -1.3931 -2.5141 3.3023 25 1 -1.9556 -1.1639 3.0462 26 1 -2.4668 -3.5311 3.1686 27 1 -0.8320 -2.5641 4.6763 28 1 -0.5400 -0.9353 -0.0045 29 1 -0.5400 0.9352 0.0045 30 1 1.8500 -0.9353 -0.0046 31 1 4.2093 2.5835 -2.2011 32 1 2.9400 3.4425 -1.2956 33 1 5.2857 1.9059 -0.0877 34 1 5.1077 3.6766 -0.1434 35 1 4.4231 2.7246 2.0700 36 1 3.0737 3.5396 1.2417 37 1 1.2274 1.7906 2.4302 38 1 4.6271 -1.8639 3.8969 39 1 3.8481 -2.4060 2.3911 40 1 4.5856 -0.7885 2.4793 41 1 2.1112 -2.4900 5.6600 42 1 1.0759 -3.6359 4.7748 43 1 2.8048 -3.5047 4.3725 44 1 -1.2454 -3.7174 0.7312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451899558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:28 Heat of formation + Delta-G solvation = -100.765691 kcal Electronic energy + Delta-G solvation = -27727.266597 eV Core-core repulsion = 24000.162294 eV Total energy + Delta-G solvation = -3727.104303 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.59559 -36.78631 -36.34640 -35.35290 -35.26054 -33.72273 -32.51404 -31.71466 -29.94941 -28.53399 -25.70030 -25.15165 -24.79649 -23.12212 -20.83564 -20.38141 -19.51238 -18.82861 -17.51799 -17.17705 -16.66221 -16.39555 -16.06413 -15.42670 -15.03463 -14.47536 -14.38002 -14.01972 -13.65689 -13.61088 -13.32373 -13.04556 -12.65708 -12.50140 -12.28888 -12.00495 -11.94028 -11.81677 -11.63709 -11.57244 -11.46715 -11.31245 -11.22064 -11.13001 -10.84462 -10.68553 -10.62147 -10.44746 -10.22610 -9.81252 -9.65254 -9.38338 -9.10122 -8.75193 -8.59935 -8.07710 -6.19704 -4.19188 1.16691 2.82387 3.20356 3.30891 3.38369 3.39359 4.02378 4.15141 4.31776 4.79891 4.81024 4.84553 4.90840 5.01173 5.12013 5.16828 5.34645 5.46551 5.52547 5.62592 5.72343 5.78662 5.86425 5.96393 6.01724 6.07216 6.13076 6.21485 6.27856 6.42855 6.45369 6.56458 6.67735 6.77680 6.94534 7.16779 7.23109 7.27238 7.40626 7.46165 7.55982 7.66157 8.40181 8.83685 9.42075 10.90868 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.007141 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.438860 B = 3920.212535 C = 5038.483278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.134 4.134 3 C 0.119 3.881 4 H 0.059 0.941 5 O -0.369 6.369 6 C 0.057 3.943 7 C -0.153 4.153 8 C -0.143 4.143 9 C 0.139 3.861 10 H 0.093 0.907 11 N -1.115 6.115 12 S 2.780 3.220 13 O -0.995 6.995 14 O -0.988 6.988 15 N -0.984 5.984 16 C 0.104 3.896 17 C 0.237 3.763 18 H 0.052 0.948 19 C -0.146 4.146 20 C -0.512 4.512 21 H 0.084 0.916 22 C 0.086 3.914 23 N -0.885 5.885 24 Si 0.849 3.151 25 H -0.272 1.272 26 H -0.286 1.286 27 H -0.259 1.259 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.411 0.589 38 H 0.043 0.957 39 H 0.083 0.917 40 H 0.052 0.948 41 H 0.025 0.975 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.363 10.173 -2.446 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C 0.060 3.940 4 H 0.077 0.923 5 O -0.287 6.287 6 C -0.020 4.020 7 C -0.192 4.192 8 C -0.183 4.183 9 C 0.031 3.969 10 H 0.111 0.889 11 N -0.873 5.873 12 S 2.789 3.211 13 O -0.978 6.978 14 O -0.972 6.972 15 N -0.826 5.826 16 C -0.042 4.042 17 C 0.134 3.866 18 H 0.070 0.930 19 C -0.206 4.206 20 C -0.552 4.552 21 H 0.102 0.898 22 C -0.118 4.118 23 N -0.523 5.523 24 Si 0.675 3.325 25 H -0.198 1.198 26 H -0.212 1.212 27 H -0.183 1.183 28 H 0.136 0.864 29 H 0.096 0.904 30 H 0.146 0.854 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.244 0.756 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.618 10.295 -1.857 12.378 hybrid contribution -1.377 0.354 0.455 1.492 sum 5.242 10.648 -1.402 11.951 Atomic orbital electron populations 1.23904 0.95962 1.01697 0.98520 1.22485 0.95598 0.96290 1.00802 1.21469 0.90871 0.97457 0.84163 0.92339 1.88050 1.60060 1.38327 1.42258 1.22601 0.93693 0.87428 0.98289 1.22200 0.99008 1.02997 0.94969 1.22213 0.99457 0.97915 0.98680 1.21202 0.92010 0.98334 0.85361 0.88900 1.55939 1.29434 1.73126 1.28797 1.01931 0.72970 0.73146 0.73085 1.93543 1.38901 1.80432 1.84914 1.93577 1.58535 1.86526 1.58560 1.57727 1.18132 1.24668 1.82042 1.21270 0.83700 1.00184 0.99092 1.19044 0.82804 0.88602 0.96199 0.93044 1.22233 1.01437 0.99705 0.97231 1.21106 0.94864 1.39258 0.99958 0.89805 1.24806 0.97946 0.94388 0.94614 1.69879 1.19705 1.39976 1.22692 0.87312 0.82820 0.78774 0.83548 1.19771 1.21209 1.18315 0.86425 0.90379 0.85394 0.88869 0.93426 0.90672 0.90740 0.89905 0.91498 0.75633 0.93833 0.89876 0.92928 0.95555 0.92568 0.92964 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 14.32 29.02 0.42 -2.56 16 2 C -0.13 -2.39 8.82 -36.02 -0.32 -2.71 16 3 C 0.12 1.79 2.63 -27.83 -0.07 1.71 16 4 H 0.06 0.81 7.78 -51.93 -0.40 0.40 16 5 O -0.37 -5.44 10.39 -35.23 -0.37 -5.81 16 6 C 0.06 0.62 6.84 37.20 0.25 0.87 16 7 C -0.15 -1.61 6.14 -26.59 -0.16 -1.77 16 8 C -0.14 -1.79 5.64 -26.55 -0.15 -1.94 16 9 C 0.14 2.05 2.27 -67.79 -0.15 1.89 16 10 H 0.09 1.44 6.50 -51.93 -0.34 1.10 16 11 N -1.12 -17.73 5.19 -4.77 -0.02 -17.76 16 12 S 2.78 52.40 6.01 -107.50 -0.65 51.75 16 13 O -0.99 -19.38 16.37 -57.18 -0.94 -20.31 16 14 O -0.99 -21.51 16.79 -57.18 -0.96 -22.47 16 15 N -0.98 -18.98 3.12 -115.85 -0.36 -19.34 16 16 C 0.10 1.73 9.09 59.84 0.54 2.28 16 17 C 0.24 5.20 2.16 -69.08 -0.15 5.05 16 18 H 0.05 1.21 4.60 -51.93 -0.24 0.98 16 19 C -0.15 -2.99 8.90 37.16 0.33 -2.66 16 20 C -0.51 -12.21 8.66 -34.44 -0.30 -12.50 16 21 H 0.08 2.13 6.83 -52.49 -0.36 1.77 16 22 C 0.09 2.16 5.36 -17.82 -0.10 2.07 16 23 N -0.89 -23.40 13.76 55.43 0.76 -22.63 16 24 Si 0.85 19.86 26.35 -169.99 -4.48 15.38 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.26 -5.98 6.11 56.52 0.35 -5.63 16 28 H 0.12 2.46 7.75 -52.48 -0.41 2.05 16 29 H 0.08 1.22 7.83 -52.49 -0.41 0.81 16 30 H 0.13 2.62 7.98 -52.49 -0.42 2.20 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.12 7.65 -51.93 -0.40 0.72 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.41 5.95 8.83 -34.47 -0.30 5.64 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.42 6.59 -51.93 -0.34 1.08 16 40 H 0.05 0.79 6.41 -51.93 -0.33 0.46 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 1.17 6.92 -51.93 -0.36 0.81 16 43 H 0.05 0.99 7.57 -51.93 -0.39 0.60 16 44 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -28.88 357.69 -8.33 -37.21 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.86 Total: 8.86 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 0.14 Total: -10.28 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.38 Total: -59.73 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -2.26 Total: -48.59 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.48 Total: 15.38 kcal Atomic # 16 Polarization: 52.40 SS G_CDS: -0.65 Total: 51.75 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.88 -8.33 -37.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451899558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.552 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds