Wall clock time and date at job start Fri Apr 10 2020 18:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 120.00101 * 2 1 4 4 H 1.09000 * 109.47719 * 0.02631 * 3 2 1 5 5 O 1.42902 * 109.48269 * 240.00276 * 3 2 1 6 6 C 1.42899 * 114.10060 * 178.86005 * 5 3 2 7 7 C 1.53090 * 109.41644 * 61.15491 * 6 5 3 8 8 C 1.53187 * 109.16372 * 302.39679 * 7 6 5 9 9 C 1.53095 * 109.48089 * 120.05686 * 3 2 1 10 10 H 1.09002 * 109.51702 * 57.68716 * 9 3 2 11 11 N 1.46500 * 109.52329 * 297.50075 * 9 3 2 12 12 S 1.65599 * 119.99849 * 145.85356 * 11 9 3 13 13 O 1.42092 * 106.40364 * 48.05616 * 12 11 9 14 14 O 1.42102 * 106.40005 * 180.97298 * 12 11 9 15 15 N 1.65603 * 107.22078 * 294.51082 * 12 11 9 16 16 C 1.46495 * 119.99692 * 92.93077 * 15 12 11 17 17 C 1.46503 * 119.99874 * 272.93361 * 15 12 11 18 18 H 1.08997 * 109.46979 * 359.97438 * 17 15 12 19 19 C 1.53002 * 109.46689 * 239.99402 * 17 15 12 20 20 C 1.50702 * 109.46782 * 120.00059 * 17 15 12 21 21 H 1.07996 * 120.00472 * 28.74955 * 20 17 15 22 22 C 1.37878 * 119.99791 * 208.75097 * 20 17 15 23 23 N 1.31513 * 120.00193 * 181.82948 * 22 20 17 24 24 Si 1.86807 * 119.99881 * 1.83297 * 22 20 17 25 25 H 1.48492 * 109.47138 * 89.17525 * 24 22 20 26 26 H 1.48497 * 109.46753 * 209.17512 * 24 22 20 27 27 H 1.48499 * 109.46795 * 329.17576 * 24 22 20 28 28 H 1.08003 * 119.99741 * 179.72631 * 1 2 3 29 29 H 1.07996 * 120.00336 * 359.72443 * 1 2 3 30 30 H 1.08000 * 120.00402 * 180.28114 * 2 1 3 31 31 H 1.08999 * 109.48313 * 181.14049 * 6 5 3 32 32 H 1.09002 * 109.47981 * 301.17757 * 6 5 3 33 33 H 1.08996 * 109.52371 * 62.29898 * 7 6 5 34 34 H 1.08997 * 109.52284 * 182.42937 * 7 6 5 35 35 H 1.08994 * 109.54207 * 176.84944 * 8 7 6 36 36 H 1.09006 * 109.53744 * 297.02099 * 8 7 6 37 37 H 0.97001 * 119.99750 * 325.85775 * 11 9 3 38 38 H 1.09007 * 109.47002 * 89.99998 * 16 15 12 39 39 H 1.08999 * 109.46977 * 209.99865 * 16 15 12 40 40 H 1.08999 * 109.47544 * 330.00492 * 16 15 12 41 41 H 1.09004 * 109.46612 * 63.12943 * 19 17 15 42 42 H 1.09000 * 109.46708 * 183.12508 * 19 17 15 43 43 H 1.08998 * 109.47521 * 303.12682 * 19 17 15 44 44 H 0.97000 * 120.00051 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3553 2.1337 0.0005 5 8 2.8851 1.3811 -1.1667 6 6 3.6276 2.5969 -1.2794 7 6 4.5717 2.7295 -0.0817 8 6 3.7522 2.6869 1.2118 9 6 2.9448 1.3858 1.2492 10 1 3.6259 0.5350 1.2700 11 7 2.1003 1.3679 2.4462 12 16 2.6359 0.6258 3.8263 13 8 3.9589 1.0949 4.0466 14 8 1.5944 0.7594 4.7838 15 7 2.7623 -0.9920 3.4957 16 6 4.0374 -1.5482 3.0363 17 6 1.5991 -1.8668 3.6625 18 1 0.7491 -1.2789 4.0088 19 6 1.9209 -2.9524 4.6914 20 6 1.2611 -2.5102 2.3423 21 1 2.0383 -2.6893 1.6142 22 6 -0.0404 -2.8703 2.0641 23 7 -0.3297 -3.4645 0.9271 24 14 -1.3931 -2.5141 3.3023 25 1 -1.9556 -1.1639 3.0462 26 1 -2.4668 -3.5311 3.1686 27 1 -0.8320 -2.5641 4.6763 28 1 -0.5400 -0.9353 -0.0045 29 1 -0.5400 0.9352 0.0045 30 1 1.8500 -0.9353 -0.0046 31 1 4.2093 2.5835 -2.2011 32 1 2.9400 3.4425 -1.2956 33 1 5.2857 1.9059 -0.0877 34 1 5.1077 3.6766 -0.1434 35 1 4.4231 2.7246 2.0700 36 1 3.0737 3.5396 1.2417 37 1 1.2274 1.7906 2.4302 38 1 4.6271 -1.8639 3.8969 39 1 3.8481 -2.4060 2.3911 40 1 4.5856 -0.7885 2.4793 41 1 2.1112 -2.4900 5.6600 42 1 1.0759 -3.6359 4.7748 43 1 2.8048 -3.5047 4.3725 44 1 -1.2454 -3.7174 0.7312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451899558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:27 Heat of formation + Delta-G solvation = -122.047957 kcal Electronic energy + Delta-G solvation = -27728.189465 eV Core-core repulsion = 24000.162294 eV Total energy + Delta-G solvation = -3728.027171 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68659 -38.37056 -37.97593 -36.93442 -36.46595 -34.93456 -34.35854 -32.90803 -31.63757 -29.68475 -27.25124 -26.93730 -25.87419 -24.18293 -22.47322 -21.51610 -20.84800 -20.29829 -19.18911 -18.66364 -18.24570 -17.82544 -17.20224 -16.95593 -16.33396 -15.94610 -15.55754 -15.26786 -15.11551 -14.89226 -14.72244 -14.42574 -14.30684 -14.27632 -13.57090 -13.45969 -13.43249 -13.25372 -13.20938 -13.06612 -12.98791 -12.71464 -12.53917 -12.44071 -12.35574 -12.15247 -12.06917 -11.77059 -11.66681 -11.46180 -11.22484 -10.73136 -10.60206 -10.42007 -9.99224 -9.67432 -8.17062 -6.16800 -0.32799 1.32599 1.41160 1.43959 1.48606 1.91407 2.38860 2.57036 3.03932 3.19884 3.40142 3.63762 3.79269 3.92691 4.00180 4.07244 4.11127 4.32619 4.36529 4.48407 4.53308 4.66335 4.70310 4.72407 4.79330 4.87205 4.90685 4.93534 4.99206 5.08140 5.14347 5.19286 5.27064 5.34665 5.38175 5.51138 5.61712 5.85126 5.89655 6.09373 6.09991 6.34707 6.46024 6.86129 7.46189 8.96059 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013726 B = 0.007141 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.438860 B = 3920.212535 C = 5038.483278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.131 4.131 3 C 0.129 3.871 4 H 0.079 0.921 5 O -0.390 6.390 6 C 0.050 3.950 7 C -0.149 4.149 8 C -0.140 4.140 9 C 0.135 3.865 10 H 0.081 0.919 11 N -1.109 6.109 12 S 2.794 3.206 13 O -0.998 6.998 14 O -1.016 7.016 15 N -0.990 5.990 16 C 0.100 3.900 17 C 0.239 3.761 18 H 0.038 0.962 19 C -0.146 4.146 20 C -0.494 4.494 21 H 0.063 0.937 22 C 0.055 3.945 23 N -0.918 5.918 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.288 1.288 27 H -0.253 1.253 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.419 0.581 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.039 0.961 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.405 12.307 -2.337 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C 0.070 3.930 4 H 0.096 0.904 5 O -0.309 6.309 6 C -0.026 4.026 7 C -0.187 4.187 8 C -0.180 4.180 9 C 0.028 3.972 10 H 0.099 0.901 11 N -0.870 5.870 12 S 2.803 3.197 13 O -0.982 6.982 14 O -1.001 7.001 15 N -0.831 5.831 16 C -0.046 4.046 17 C 0.134 3.866 18 H 0.056 0.944 19 C -0.206 4.206 20 C -0.534 4.534 21 H 0.081 0.919 22 C -0.146 4.146 23 N -0.558 5.558 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.215 1.215 27 H -0.177 1.177 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.131 0.869 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.254 0.746 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.677 12.429 -1.739 14.712 hybrid contribution -1.588 -0.279 0.354 1.651 sum 6.089 12.150 -1.386 13.661 Atomic orbital electron populations 1.23845 0.96128 1.01594 0.99346 1.22413 0.95575 0.96742 1.00198 1.21281 0.91145 0.96012 0.84548 0.90351 1.88023 1.60497 1.40633 1.41752 1.22897 0.93951 0.86402 0.99357 1.22203 0.98632 1.04327 0.93545 1.22199 0.99448 0.96848 0.99475 1.21343 0.91856 0.99534 0.84507 0.90092 1.55700 1.30146 1.72591 1.28527 1.01359 0.72428 0.72808 0.73129 1.93536 1.39067 1.80313 1.85267 1.93537 1.59429 1.86846 1.60240 1.57603 1.18194 1.24872 1.82427 1.21418 0.82924 1.00406 0.99832 1.18875 0.83438 0.89005 0.95300 0.94413 1.22195 1.01736 0.99238 0.97460 1.21112 0.93972 1.38111 1.00199 0.91930 1.25171 0.99330 0.94710 0.95370 1.69961 1.19784 1.41866 1.24141 0.86804 0.81420 0.78529 0.82667 1.19628 1.21465 1.17650 0.89666 0.87405 0.88819 0.86899 0.91731 0.91278 0.87909 0.90810 0.89802 0.74638 0.92169 0.90762 0.91301 0.94218 0.93240 0.91753 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.29 14.32 67.78 0.97 -5.32 16 2 C -0.13 -4.71 8.82 25.65 0.23 -4.48 16 3 C 0.13 3.65 2.63 29.88 0.08 3.73 16 4 H 0.08 1.93 7.78 -2.39 -0.02 1.91 16 5 O -0.39 -10.76 10.39 -148.98 -1.55 -12.31 16 6 C 0.05 0.92 6.84 72.01 0.49 1.41 16 7 C -0.15 -2.62 6.14 30.69 0.19 -2.43 16 8 C -0.14 -3.09 5.64 30.71 0.17 -2.92 16 9 C 0.14 3.75 2.27 45.08 0.10 3.85 16 10 H 0.08 2.43 6.50 -2.39 -0.02 2.41 16 11 N -1.11 -33.61 5.19 -169.02 -0.88 -34.49 16 12 S 2.79 101.85 6.01 -56.49 -0.34 101.51 16 13 O -1.00 -37.10 16.37 -128.00 -2.10 -39.20 16 14 O -1.02 -43.19 16.79 -128.00 -2.15 -45.34 16 15 N -0.99 -37.41 3.12 -520.44 -1.62 -39.03 16 16 C 0.10 3.23 9.09 127.77 1.16 4.39 16 17 C 0.24 10.37 2.16 44.25 0.10 10.46 16 18 H 0.04 1.77 4.60 -2.39 -0.01 1.75 16 19 C -0.15 -5.84 8.90 71.98 0.64 -5.20 16 20 C -0.49 -23.90 8.66 25.60 0.22 -23.68 16 21 H 0.06 3.28 6.83 -2.91 -0.02 3.26 16 22 C 0.05 2.79 5.36 84.66 0.45 3.24 16 23 N -0.92 -49.99 13.76 21.45 0.30 -49.70 16 24 Si 0.88 40.81 26.35 68.60 1.81 42.61 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 27 H -0.25 -11.38 6.11 99.48 0.61 -10.77 16 28 H 0.08 3.70 7.75 -2.91 -0.02 3.68 16 29 H 0.11 3.23 7.83 -2.91 -0.02 3.20 16 30 H 0.09 4.01 7.98 -2.91 -0.02 3.99 16 31 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.79 7.65 -2.39 -0.02 1.77 16 36 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.42 11.40 8.83 -96.74 -0.85 10.55 16 38 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.07 2.54 6.59 -2.39 -0.02 2.52 16 40 H 0.07 1.99 6.41 -2.39 -0.02 1.97 16 41 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.05 2.01 6.92 -2.39 -0.02 2.00 16 43 H 0.06 2.36 7.57 -2.39 -0.02 2.35 16 44 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -62.06 357.69 -1.68 -63.75 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.04 Total: 29.14 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 4.81 Total: -16.95 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -2.21 Total: -123.22 kcal Atomic # 8 Polarization: -91.05 SS G_CDS: -5.79 Total: -96.84 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.81 Total: 42.61 kcal Atomic # 16 Polarization: 101.85 SS G_CDS: -0.34 Total: 101.51 kcal Total: -62.06 -1.68 -63.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451899558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.302 kcal (2) G-P(sol) polarization free energy of solvation -62.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds