Wall clock time and date at job start Fri Apr 10 2020 18:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00243 * 2 1 4 4 H 1.09005 * 109.48612 * 359.96734 * 3 2 1 5 5 O 1.42909 * 109.53871 * 239.97242 * 3 2 1 6 6 C 1.42901 * 114.15426 * 178.92451 * 5 3 2 7 7 C 1.53090 * 109.41399 * 61.12331 * 6 5 3 8 8 C 1.53183 * 109.16573 * 302.39148 * 7 6 5 9 9 C 1.53093 * 109.48169 * 119.99598 * 3 2 1 10 10 H 1.08997 * 109.51918 * 57.62169 * 9 3 2 11 11 N 1.46505 * 109.52020 * 297.50146 * 9 3 2 12 12 S 1.65598 * 119.99839 * 145.12876 * 11 9 3 13 13 O 1.42099 * 106.40051 * 311.45557 * 12 11 9 14 14 O 1.42105 * 106.40206 * 178.53858 * 12 11 9 15 15 N 1.65596 * 107.21978 * 64.99690 * 12 11 9 16 16 C 1.46507 * 119.99652 * 269.99930 * 15 12 11 17 17 C 1.53003 * 109.46782 * 264.99912 * 16 15 12 18 18 C 1.46493 * 120.00283 * 90.00301 * 15 12 11 19 19 C 1.50706 * 109.47128 * 264.99750 * 18 15 12 20 20 H 1.08000 * 119.99302 * 359.97438 * 19 18 15 21 21 C 1.37871 * 120.00436 * 179.72498 * 19 18 15 22 22 N 1.31514 * 120.00481 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99745 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47209 * 90.00365 * 23 21 19 25 25 H 1.48506 * 109.47294 * 210.00213 * 23 21 19 26 26 H 1.48501 * 109.47275 * 330.00116 * 23 21 19 27 27 H 1.07997 * 119.99870 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99766 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.99892 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47974 * 301.13862 * 6 5 3 31 31 H 1.08995 * 109.48154 * 181.10223 * 6 5 3 32 32 H 1.09000 * 109.52479 * 182.48476 * 7 6 5 33 33 H 1.09000 * 109.57990 * 62.32902 * 7 6 5 34 34 H 1.09002 * 109.54112 * 297.11720 * 8 7 6 35 35 H 1.08998 * 109.61527 * 176.89382 * 8 7 6 36 36 H 0.97001 * 119.99931 * 325.11856 * 11 9 3 37 37 H 1.08996 * 109.47226 * 24.99725 * 16 15 12 38 38 H 1.09005 * 109.46840 * 145.00569 * 16 15 12 39 39 H 1.08997 * 109.47571 * 300.00113 * 17 16 15 40 40 H 1.08996 * 109.47402 * 60.00415 * 17 16 15 41 41 H 1.09009 * 109.46944 * 180.02562 * 17 16 15 42 42 H 1.09001 * 109.47786 * 145.00023 * 18 15 12 43 43 H 1.08998 * 109.47558 * 24.99885 * 18 15 12 44 44 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3555 2.1338 -0.0006 5 8 2.8862 1.3820 -1.1660 6 6 3.6299 2.5971 -1.2779 7 6 4.5731 2.7287 -0.0793 8 6 3.7523 2.6869 1.2135 9 6 2.9438 1.3864 1.2500 10 1 3.6239 0.5351 1.2725 11 7 2.0981 1.3691 2.4462 12 16 2.6248 0.6122 3.8216 13 8 3.0910 -0.6690 3.4211 14 8 1.6084 0.7995 4.7970 15 7 3.9506 1.4444 4.3620 16 6 5.2896 1.0670 3.9027 17 6 5.9275 0.1158 4.9173 18 6 3.7846 2.5578 5.2995 19 6 3.7301 3.8549 4.5342 20 1 3.8115 3.8503 3.4573 21 6 3.5713 5.0470 5.2084 22 7 3.5232 6.1790 4.5405 23 14 3.4228 5.0543 7.0704 24 1 4.7738 5.1792 7.6743 25 1 2.5825 6.2026 7.4956 26 1 2.7940 3.7870 7.5219 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 2.9431 3.4434 -1.2947 31 1 4.2125 2.5833 -2.1990 32 1 5.1092 3.6758 -0.1398 33 1 5.2870 1.9051 -0.0841 34 1 3.0735 3.5392 1.2421 35 1 4.4214 2.7245 2.0731 36 1 1.2297 1.8012 2.4325 37 1 5.2152 0.5699 2.9355 38 1 5.9057 1.9609 3.8055 39 1 6.0018 0.6128 5.8845 40 1 5.3114 -0.7781 5.0145 41 1 6.9240 -0.1647 4.5757 42 1 4.6267 2.5792 5.9912 43 1 2.8583 2.4269 5.8589 44 1 3.4111 7.0176 5.0148 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451906744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:30 Heat of formation + Delta-G solvation = -106.043779 kcal Electronic energy + Delta-G solvation = -27262.502065 eV Core-core repulsion = 23535.168888 eV Total energy + Delta-G solvation = -3727.333178 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.64626 -36.75767 -36.24498 -35.30587 -35.29426 -34.01482 -32.66437 -31.84373 -30.25818 -28.62795 -27.16440 -24.91644 -23.15520 -22.93028 -21.58559 -20.46773 -19.96436 -18.87570 -17.35400 -17.08954 -16.81302 -16.59309 -16.14897 -15.58842 -15.05805 -14.44023 -14.27973 -14.14868 -13.99614 -13.87102 -13.43755 -13.25654 -12.79361 -12.61326 -12.34860 -12.13582 -11.96959 -11.90150 -11.61866 -11.53878 -11.50839 -11.36328 -11.17285 -11.05653 -10.99417 -10.79769 -10.60622 -10.52200 -10.33132 -10.15381 -9.74752 -9.56312 -9.44662 -8.91920 -8.67087 -8.13645 -6.18201 -4.18311 1.21119 2.16372 3.22772 3.30370 3.37021 3.38721 3.90999 4.09250 4.33671 4.74708 4.79414 4.95678 4.99113 5.06523 5.10806 5.16131 5.23979 5.28895 5.36842 5.51856 5.62069 5.68391 5.70138 5.77122 5.88543 5.93123 5.98032 6.08270 6.10746 6.21082 6.41238 6.48385 6.56361 6.58458 6.66088 6.70401 6.83421 7.08368 7.18469 7.27439 7.46320 7.54431 8.38940 8.86994 9.43390 10.93519 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.005856 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.602101 B = 4780.038038 C = 5422.100428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.137 4.137 3 C 0.118 3.882 4 H 0.068 0.932 5 O -0.374 6.374 6 C 0.058 3.942 7 C -0.153 4.153 8 C -0.147 4.147 9 C 0.135 3.865 10 H 0.093 0.907 11 N -1.113 6.113 12 S 2.790 3.210 13 O -0.995 6.995 14 O -0.982 6.982 15 N -0.986 5.986 16 C 0.126 3.874 17 C -0.171 4.171 18 C 0.214 3.786 19 C -0.545 4.545 20 H 0.092 0.908 21 C 0.077 3.923 22 N -0.894 5.894 23 Si 0.865 3.135 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.261 1.261 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.414 0.586 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.032 0.968 43 H 0.046 0.954 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 -8.464 -9.101 12.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.155 4.155 3 C 0.059 3.941 4 H 0.086 0.914 5 O -0.293 6.293 6 C -0.018 4.018 7 C -0.192 4.192 8 C -0.186 4.186 9 C 0.026 3.974 10 H 0.111 0.889 11 N -0.871 5.871 12 S 2.797 3.203 13 O -0.978 6.978 14 O -0.967 6.967 15 N -0.827 5.827 16 C 0.000 4.000 17 C -0.230 4.230 18 C 0.091 3.909 19 C -0.584 4.584 20 H 0.110 0.890 21 C -0.126 4.126 22 N -0.532 5.532 23 Si 0.692 3.308 24 H -0.201 1.201 25 H -0.210 1.210 26 H -0.185 1.185 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.247 0.753 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.409 -9.281 -8.804 12.799 hybrid contribution -0.210 1.156 1.084 1.599 sum 0.199 -8.125 -7.720 11.210 Atomic orbital electron populations 1.23866 0.95620 1.02165 0.99979 1.22658 0.95603 0.97514 0.99748 1.21360 0.91466 0.96226 0.85067 0.91450 1.87947 1.60150 1.39351 1.41803 1.22650 0.93789 0.86807 0.98576 1.22201 0.98854 1.03122 0.95002 1.22355 1.00022 0.97574 0.98643 1.21256 0.92163 0.99103 0.84854 0.88932 1.55850 1.29114 1.74891 1.27241 1.01602 0.72958 0.73209 0.72490 1.93552 1.82024 1.38699 1.83523 1.93578 1.57827 1.86751 1.58509 1.57509 1.18428 1.48125 1.58615 1.21070 0.84190 0.98619 0.96114 1.22214 1.00385 0.99896 1.00480 1.19591 0.97974 0.84524 0.88853 1.21642 1.51130 0.89051 0.96564 0.89014 1.24832 0.94302 0.95495 0.97998 1.69874 1.49707 0.97837 1.35813 0.87008 0.78634 0.78559 0.86619 1.20104 1.21045 1.18549 0.87882 0.88385 0.86541 0.92980 0.88835 0.90284 0.91148 0.90322 0.88600 0.75316 0.91662 0.89870 0.92245 0.92519 0.92135 0.95038 0.93603 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 14.32 29.01 0.42 -1.58 16 2 C -0.14 -1.75 8.82 -36.03 -0.32 -2.07 16 3 C 0.12 1.57 2.64 -27.83 -0.07 1.50 16 4 H 0.07 0.87 7.79 -51.93 -0.40 0.46 16 5 O -0.37 -5.03 10.39 -35.23 -0.37 -5.39 16 6 C 0.06 0.67 6.84 37.20 0.25 0.92 16 7 C -0.15 -1.88 6.14 -26.59 -0.16 -2.04 16 8 C -0.15 -2.21 4.83 -26.55 -0.13 -2.34 16 9 C 0.13 1.97 2.42 -67.79 -0.16 1.81 16 10 H 0.09 1.38 7.14 -51.93 -0.37 1.00 16 11 N -1.11 -17.95 5.19 -4.77 -0.02 -17.97 16 12 S 2.79 53.04 6.08 -107.50 -0.65 52.39 16 13 O -0.99 -19.41 16.45 -57.17 -0.94 -20.35 16 14 O -0.98 -21.86 16.69 -57.17 -0.95 -22.82 16 15 N -0.99 -18.85 2.58 -115.66 -0.30 -19.15 16 16 C 0.13 2.04 4.89 -4.04 -0.02 2.02 16 17 C -0.17 -2.49 10.24 37.16 0.38 -2.11 16 18 C 0.21 4.79 4.50 -5.19 -0.02 4.77 16 19 C -0.55 -13.67 9.94 -34.44 -0.34 -14.01 16 20 H 0.09 2.32 5.55 -52.49 -0.29 2.03 16 21 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 22 N -0.89 -25.29 13.96 55.43 0.77 -24.52 16 23 Si 0.86 20.40 27.47 -169.99 -4.67 15.73 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.26 -6.07 6.53 56.52 0.37 -5.70 16 27 H 0.10 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.10 1.00 7.83 -52.49 -0.41 0.59 16 29 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.10 1.61 5.15 -51.93 -0.27 1.35 16 36 H 0.41 6.20 8.84 -34.47 -0.30 5.90 16 37 H 0.07 0.95 7.24 -51.93 -0.38 0.58 16 38 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 42 H 0.03 0.68 7.55 -51.93 -0.39 0.29 16 43 H 0.05 1.10 5.95 -51.93 -0.31 0.79 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -31.00 361.29 -8.91 -39.91 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.94 Total: 7.91 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -0.28 Total: -11.18 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.45 Total: -61.63 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -2.26 Total: -48.56 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Atomic # 16 Polarization: 53.04 SS G_CDS: -0.65 Total: 52.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.00 -8.91 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451906744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.137 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds