Wall clock time and date at job start Fri Apr 10 2020 18:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99954 * 2 1 4 4 C 1.50699 * 109.47092 * 275.00210 * 3 2 1 5 5 H 1.08007 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00225 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00035 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 119.99808 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47149 * 89.99958 * 8 6 4 10 10 H 1.48504 * 109.47108 * 210.00251 * 8 6 4 11 11 H 1.48505 * 109.47060 * 330.00218 * 8 6 4 12 12 S 1.65597 * 119.99691 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.40314 * 156.45686 * 12 2 1 14 14 O 1.42104 * 106.40350 * 23.53650 * 12 2 1 15 15 N 1.65603 * 107.21830 * 269.99502 * 12 2 1 16 16 C 1.46498 * 119.99761 * 65.00119 * 15 12 2 17 17 H 1.08999 * 109.55876 * 24.80081 * 16 15 12 18 18 C 1.53157 * 109.55566 * 264.49002 * 16 15 12 19 19 C 1.53047 * 109.40833 * 181.52939 * 18 16 15 20 20 O 1.43045 * 109.44142 * 59.33045 * 19 18 16 21 21 C 1.42580 * 113.84886 * 301.26733 * 20 19 18 22 22 C 1.53429 * 113.55893 * 286.13672 * 21 20 19 23 23 C 1.53840 * 86.97237 * 220.04060 * 22 21 20 24 24 C 1.53390 * 113.62921 * 188.21942 * 21 20 19 25 25 C 1.52811 * 112.93833 * 57.10466 * 21 20 19 26 26 H 1.09006 * 109.46830 * 270.00032 * 1 2 3 27 27 H 1.08997 * 109.47088 * 29.99245 * 1 2 3 28 28 H 1.08991 * 109.47365 * 150.00195 * 1 2 3 29 29 H 1.08999 * 109.47632 * 35.00281 * 3 2 1 30 30 H 1.08999 * 109.47012 * 155.00255 * 3 2 1 31 31 H 0.97002 * 119.99524 * 179.97438 * 7 6 4 32 32 H 0.96997 * 120.00377 * 245.00249 * 15 12 2 33 33 H 1.09001 * 109.48332 * 61.54707 * 18 16 15 34 34 H 1.09003 * 109.48492 * 301.50851 * 18 16 15 35 35 H 1.08998 * 109.47348 * 299.34020 * 19 18 16 36 36 H 1.08994 * 109.47662 * 179.32356 * 19 18 16 37 37 H 1.08999 * 113.63222 * 334.55839 * 22 21 20 38 38 H 1.09001 * 113.63264 * 105.51991 * 22 21 20 39 39 H 1.09002 * 113.60388 * 270.60119 * 23 22 21 40 40 H 1.08996 * 113.68265 * 139.73543 * 23 22 21 41 41 H 1.09007 * 113.62348 * 254.41601 * 24 21 20 42 42 H 1.08998 * 113.63474 * 25.27156 * 24 21 20 43 43 H 1.08994 * 109.56473 * 65.89516 * 25 21 20 44 44 H 1.09000 * 109.55811 * 186.11805 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9281 1.1938 -2.2332 6 6 3.0006 2.9503 -1.6665 7 7 3.1257 3.3843 -2.9017 8 14 3.7147 3.9397 -0.2521 9 1 5.1116 3.5041 0.0011 10 1 3.7019 5.3830 -0.6014 11 1 2.8984 3.7185 0.9686 12 16 2.2930 -1.4342 -0.0006 13 8 3.5759 -1.1567 -0.5450 14 8 1.4112 -2.4063 -0.5454 15 7 2.5382 -1.8593 1.5810 16 6 1.3947 -2.1788 2.4393 17 1 0.5592 -2.5133 1.8244 18 6 0.9848 -0.9338 3.2315 19 6 -0.1853 -1.2811 4.1549 20 8 0.2083 -2.3250 5.0503 21 6 0.6289 -3.5190 4.3943 22 6 -0.5270 -4.3251 3.7876 23 6 0.2026 -5.5870 4.2796 24 6 0.8585 -4.6970 5.3495 25 6 1.7852 -3.2888 3.4222 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3633 -0.8899 -0.5137 29 1 1.6502 2.0043 0.5895 30 1 3.1858 1.1176 0.4343 31 1 3.5892 4.2179 -3.0782 32 1 3.4388 -1.8969 1.9391 33 1 0.6817 -0.1469 2.5409 34 1 1.8289 -0.5885 3.8285 35 1 -1.0331 -1.6155 3.5571 36 1 -0.4702 -0.3989 4.7281 37 1 -1.4845 -4.1542 4.2798 38 1 -0.5886 -4.2513 2.7019 39 1 0.9097 -5.9924 3.5558 40 1 -0.4633 -6.3454 4.6911 41 1 1.9113 -4.9224 5.5199 42 1 0.2852 -4.6281 6.2740 43 1 2.6743 -2.9890 3.9769 44 1 1.9898 -4.2086 2.8742 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000486942165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:34 Heat of formation + Delta-G solvation = -98.213765 kcal Electronic energy + Delta-G solvation = -26662.570159 eV Core-core repulsion = 22935.576517 eV Total energy + Delta-G solvation = -3726.993643 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.80394 -37.05194 -36.64499 -35.75188 -35.54918 -35.26826 -32.41311 -30.96028 -29.54964 -28.42442 -26.09113 -25.22269 -24.11465 -24.01022 -21.95893 -21.16895 -19.38958 -18.55242 -17.47099 -17.06582 -16.94325 -16.55107 -16.45508 -15.65020 -15.42282 -14.98904 -14.79391 -14.28496 -14.06696 -13.68660 -13.60752 -13.26265 -13.14319 -12.67786 -12.57168 -12.40839 -11.99622 -11.85551 -11.76070 -11.63244 -11.58363 -11.51776 -11.35681 -11.27031 -11.15204 -11.09218 -10.95146 -10.71263 -10.49164 -10.27562 -10.17294 -9.64005 -9.58233 -9.43533 -8.61684 -8.17534 -6.10411 -4.09996 1.09109 3.24584 3.29712 3.30964 3.36603 3.53700 4.00273 4.20017 4.26782 4.36005 4.46548 4.47682 4.62669 4.79064 4.82151 4.90686 4.95492 5.17819 5.20581 5.23809 5.37794 5.45582 5.47662 5.49983 5.56001 5.61648 5.62045 5.69105 5.77166 5.78782 5.91176 6.03370 6.08106 6.11889 6.25335 6.40946 6.67748 6.95551 7.07054 7.09460 7.37237 7.55269 8.46420 8.94373 9.48419 11.03153 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.003999 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.378931 B = 6999.874638 C = 7464.840150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.989 5.989 3 C 0.229 3.771 4 C -0.533 4.533 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.873 3.127 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.265 1.265 12 S 2.781 3.219 13 O -0.961 6.961 14 O -0.993 6.993 15 N -1.129 6.129 16 C 0.154 3.846 17 H 0.091 0.909 18 C -0.182 4.182 19 C 0.064 3.936 20 O -0.367 6.367 21 C 0.093 3.907 22 C -0.166 4.166 23 C -0.140 4.140 24 C -0.120 4.120 25 C -0.128 4.128 26 H 0.040 0.960 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.265 0.735 32 H 0.412 0.588 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.008 -13.821 17.992 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.831 5.831 3 C 0.105 3.895 4 C -0.572 4.572 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.190 1.190 12 S 2.788 3.212 13 O -0.945 6.945 14 O -0.976 6.976 15 N -0.886 5.886 16 C 0.046 3.954 17 H 0.109 0.891 18 C -0.221 4.221 19 C -0.013 4.013 20 O -0.285 6.285 21 C 0.052 3.948 22 C -0.203 4.203 23 C -0.177 4.177 24 C -0.157 4.157 25 C -0.167 4.167 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.245 0.755 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.839 -14.124 17.207 23.288 hybrid contribution 0.759 1.011 0.744 1.467 sum -6.080 -13.113 17.952 23.048 Atomic orbital electron populations 1.21466 0.79854 1.04116 1.00173 1.57363 1.14367 1.22542 1.88856 1.19421 0.90804 0.80646 0.98591 1.21381 1.36890 1.07079 0.91872 0.90427 1.24877 0.95361 0.97205 0.95541 1.69899 1.42496 1.21999 1.18877 0.86914 0.80392 0.79736 0.83000 1.19825 1.20950 1.18970 1.02002 0.73438 0.72964 0.72769 1.93655 1.40581 1.84757 1.75487 1.93534 1.67581 1.59874 1.76641 1.56372 1.14287 1.85826 1.32133 1.20696 0.88637 0.94166 0.91909 0.89065 1.22875 1.00201 0.99071 0.99985 1.22537 0.95545 0.90723 0.92514 1.87942 1.84882 1.22894 1.32824 1.22675 0.93852 0.84473 0.93762 1.23572 0.98625 0.96480 1.01668 1.22729 0.99957 0.96411 0.98638 1.22996 1.01722 0.93121 0.97904 1.22141 0.98263 0.99604 0.96712 0.94153 0.89979 0.91247 0.94877 0.95347 0.92502 0.75455 0.89234 0.90213 0.92805 0.88526 0.89216 0.90722 0.89738 0.90782 0.90732 0.89095 0.90103 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 10.46 59.85 0.63 2.06 16 2 N -0.99 -19.18 2.96 -123.06 -0.36 -19.54 16 3 C 0.23 5.23 4.15 -5.20 -0.02 5.21 16 4 C -0.53 -15.04 9.94 -34.44 -0.34 -15.38 16 5 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -27.41 13.96 55.43 0.77 -26.63 16 8 Si 0.87 20.89 27.47 -169.99 -4.67 16.22 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 12 S 2.78 52.58 6.08 -107.50 -0.65 51.92 16 13 O -0.96 -22.36 17.11 -57.17 -0.98 -23.33 16 14 O -0.99 -19.95 16.08 -57.17 -0.92 -20.87 16 15 N -1.13 -15.39 5.54 -4.68 -0.03 -15.42 16 16 C 0.15 1.79 2.82 -67.68 -0.19 1.60 16 17 H 0.09 1.10 6.98 -51.93 -0.36 0.74 16 18 C -0.18 -1.98 5.69 -26.63 -0.15 -2.14 16 19 C 0.06 0.62 6.74 37.18 0.25 0.87 16 20 O -0.37 -3.94 10.53 -35.23 -0.37 -4.31 16 21 C 0.09 0.87 1.16 -90.29 -0.10 0.77 16 22 C -0.17 -1.41 6.90 -26.07 -0.18 -1.59 16 23 C -0.14 -1.01 7.73 -25.86 -0.20 -1.21 16 24 C -0.12 -0.94 7.50 -26.09 -0.20 -1.13 16 25 C -0.13 -1.25 4.71 -26.66 -0.13 -1.38 16 26 H 0.04 0.50 6.21 -51.93 -0.32 0.18 16 27 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 28 H 0.07 1.07 7.02 -51.93 -0.36 0.70 16 29 H 0.03 0.71 7.17 -51.93 -0.37 0.34 16 30 H 0.03 0.65 7.04 -51.93 -0.37 0.29 16 31 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.41 4.85 8.84 -34.48 -0.30 4.54 16 33 H 0.09 1.03 5.63 -51.93 -0.29 0.74 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.47 7.83 -51.93 -0.41 0.07 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.67 7.56 -51.93 -0.39 0.28 16 39 H 0.08 0.59 7.61 -51.93 -0.40 0.19 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.78 7.31 -51.93 -0.38 0.40 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -34.80 354.31 -9.53 -44.33 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.92 Total: 2.62 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -0.73 Total: -10.33 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.38 Total: -61.59 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -2.27 Total: -48.51 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: 52.58 SS G_CDS: -0.65 Total: 51.92 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.80 -9.53 -44.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486942165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.886 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds