Wall clock time and date at job start Fri Apr 10 2020 18:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00453 * 2 1 4 4 C 1.34779 * 119.99556 * 180.02562 * 2 1 3 5 5 O 1.21277 * 120.00306 * 359.97438 * 4 2 1 6 6 C 1.50706 * 119.99650 * 179.97438 * 4 2 1 7 7 N 1.46498 * 109.46552 * 180.02562 * 6 4 2 8 8 C 1.34785 * 119.99521 * 180.02562 * 7 6 4 9 9 O 1.21715 * 120.00261 * 359.97438 * 8 7 6 10 10 C 1.46255 * 119.99650 * 180.27579 * 8 7 6 11 11 C 1.35025 * 119.99918 * 172.93880 * 10 8 7 12 12 C 1.46960 * 119.99925 * 348.68186 * 11 10 8 13 13 C 1.40028 * 120.10009 * 316.40557 * 12 11 10 14 14 C 1.37594 * 119.89934 * 179.76739 * 13 12 11 15 15 C 1.39184 * 120.09927 * 0.50673 * 14 13 12 16 16 O 1.35570 * 119.89843 * 179.76454 * 15 14 13 17 17 C 1.34783 * 116.99886 * 174.33946 * 16 15 14 18 18 H 1.07998 * 119.99829 * 5.06153 * 17 16 15 19 19 C 1.38721 * 119.99912 * 185.05607 * 17 16 15 20 20 N 1.31504 * 120.00035 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99732 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47098 * 90.00722 * 21 19 17 23 23 H 1.48507 * 109.46797 * 210.00341 * 21 19 17 24 24 H 1.48504 * 109.47379 * 330.00326 * 21 19 17 25 25 C 1.39177 * 120.19984 * 359.74795 * 15 14 13 26 26 C 1.37596 * 120.10326 * 359.97438 * 25 15 14 27 27 H 1.08999 * 109.47292 * 270.00270 * 1 2 3 28 28 H 1.09002 * 109.46950 * 29.99500 * 1 2 3 29 29 H 1.08996 * 109.47401 * 149.99221 * 1 2 3 30 30 H 1.08997 * 109.47384 * 240.00061 * 3 2 1 31 31 H 1.08999 * 109.47421 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47480 * 119.99782 * 3 2 1 33 33 H 1.08992 * 109.47146 * 60.00378 * 6 4 2 34 34 H 1.09003 * 109.47133 * 299.99630 * 6 4 2 35 35 H 0.96995 * 120.00513 * 0.02562 * 7 6 4 36 36 H 1.08005 * 120.00497 * 352.93596 * 10 8 7 37 37 H 1.08000 * 120.00300 * 168.68630 * 11 10 8 38 38 H 1.08007 * 120.05004 * 0.02562 * 13 12 11 39 39 H 1.07995 * 119.95777 * 180.23340 * 14 13 12 40 40 H 0.96998 * 119.99874 * 179.97438 * 20 19 17 41 41 H 1.07998 * 119.94407 * 179.97438 * 25 15 14 42 42 H 1.08004 * 120.04756 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5324 -2.2175 -0.0005 6 6 3.6458 -1.1673 -0.0011 7 7 4.1340 -2.5485 -0.0022 8 6 5.4592 -2.7949 -0.0024 9 8 6.2502 -1.8698 -0.0021 10 6 5.9466 -4.1738 -0.0096 11 6 7.2658 -4.4228 -0.1535 12 6 8.1788 -3.3414 -0.5495 13 6 7.8162 -2.4551 -1.5712 14 6 8.6721 -1.4412 -1.9354 15 6 9.9011 -1.3021 -1.2971 16 8 10.7433 -0.3045 -1.6624 17 6 11.8640 -0.1508 -0.9296 18 1 12.0980 -0.8564 -0.1463 19 6 12.7169 0.9139 -1.1816 20 7 12.4317 1.7734 -2.1352 21 14 14.2704 1.1266 -0.1665 22 1 15.3899 0.3986 -0.8163 23 1 14.6068 2.5700 -0.0729 24 1 14.0497 0.5803 1.1967 25 6 10.2679 -2.1839 -0.2847 26 6 9.4160 -3.1973 0.0900 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5139 30 1 2.8242 1.3264 -0.8900 31 1 1.4894 2.0972 0.0005 32 1 2.8242 1.3264 0.8900 33 1 4.0095 -0.6538 0.8888 34 1 4.0089 -0.6533 -0.8912 35 1 3.5037 -3.2858 -0.0028 36 1 5.2513 -4.9930 0.1003 37 1 7.6502 -5.4167 0.0223 38 1 6.8644 -2.5647 -2.0698 39 1 8.3919 -0.7548 -2.7207 40 1 13.0279 2.5180 -2.3112 41 1 11.2227 -2.0724 0.2076 42 1 9.7014 -3.8809 0.8761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490608602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:40 Heat of formation + Delta-G solvation = -33.480220 kcal Electronic energy + Delta-G solvation = -25506.233491 eV Core-core repulsion = 21646.602954 eV Total energy + Delta-G solvation = -3859.630537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.45690 -39.48170 -38.62341 -36.52041 -35.98453 -34.33193 -33.03303 -32.12394 -30.10706 -29.72083 -28.22105 -27.46565 -25.78723 -25.29159 -22.86564 -21.76310 -20.91967 -20.03101 -19.21711 -17.93886 -17.52003 -16.98305 -16.62322 -16.52827 -16.31968 -15.29755 -14.97775 -14.63595 -14.51369 -14.20111 -13.88783 -13.57756 -13.47146 -13.28948 -13.18375 -13.11372 -13.05120 -12.90230 -12.64446 -12.38099 -12.31696 -12.15910 -11.68951 -11.36178 -11.00743 -10.67054 -10.61272 -10.40752 -10.28788 -9.53137 -9.42067 -9.15958 -9.14717 -9.03824 -8.68873 -7.91431 -6.85239 -6.45384 -4.01041 1.26004 2.18800 2.42798 2.47249 2.71258 3.13943 3.15156 3.19549 3.39438 3.63283 3.97597 4.09163 4.66969 4.70876 4.86225 4.92861 5.05185 5.07393 5.12031 5.25965 5.27871 5.29003 5.35605 5.36662 5.39602 5.64651 5.75716 5.86380 5.96485 6.26423 6.34263 6.36129 6.47905 6.61386 6.80116 6.85272 7.04933 7.13465 7.37587 7.46644 7.51394 7.64916 7.71034 7.93498 8.01577 8.51209 9.00501 9.72616 10.72566 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015851 B = 0.002692 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.071989 B =10397.076522 C =11722.846557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.620 5.620 3 C 0.073 3.927 4 C 0.510 3.490 5 O -0.539 6.539 6 C 0.105 3.895 7 N -0.727 5.727 8 C 0.542 3.458 9 O -0.513 6.513 10 C -0.264 4.264 11 C 0.028 3.972 12 C -0.189 4.189 13 C 0.012 3.988 14 C -0.203 4.203 15 C 0.171 3.829 16 O -0.173 6.173 17 C -0.389 4.389 18 H 0.094 0.906 19 C 0.039 3.961 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.251 4.251 26 C -0.041 4.041 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.407 0.593 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.270 0.730 41 H 0.126 0.874 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.645 -5.190 4.713 20.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.354 5.354 3 C -0.070 4.070 4 C 0.298 3.702 5 O -0.416 6.416 6 C -0.022 4.022 7 N -0.383 5.383 8 C 0.332 3.668 9 O -0.389 6.389 10 C -0.285 4.285 11 C 0.009 3.991 12 C -0.190 4.190 13 C -0.007 4.007 14 C -0.222 4.222 15 C 0.116 3.884 16 O -0.076 6.076 17 C -0.466 4.466 18 H 0.111 0.889 19 C -0.166 4.166 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.270 4.270 26 C -0.060 4.060 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.244 0.756 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.143 0.857 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.303 -4.643 4.426 20.341 hybrid contribution 0.285 -0.049 0.649 0.711 sum -19.018 -4.691 5.076 20.235 Atomic orbital electron populations 1.21701 0.78742 1.03324 1.02007 1.47690 1.07358 1.06488 1.73899 1.21944 0.97521 0.84728 1.02840 1.20696 0.90275 0.83461 0.75734 1.90679 1.70076 1.30929 1.49920 1.20987 0.89779 0.86669 1.04805 1.45749 1.07899 1.07158 1.77543 1.18498 0.81080 0.90602 0.76576 1.90998 1.53889 1.45991 1.48028 1.22547 0.96819 0.94770 1.14391 1.22340 0.92279 0.97526 0.86989 1.18303 0.96075 1.01064 1.03573 1.20447 0.95181 0.91336 0.93721 1.19996 0.93941 1.02526 1.05739 1.19528 0.89547 0.87945 0.91352 1.83905 1.29531 1.43813 1.50313 1.21395 0.97238 1.11945 1.15985 0.88894 1.25319 0.99349 0.94711 0.97183 1.70020 1.37111 1.13400 1.28989 0.85704 0.80158 0.78056 0.79479 1.19843 1.20242 1.19135 1.20952 1.02303 0.99879 1.03849 1.20746 0.92076 0.96312 0.96832 0.92591 0.90973 0.90433 0.91234 0.90005 0.91341 0.88496 0.88364 0.75629 0.85949 0.85945 0.88090 0.86861 0.91977 0.85661 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 10.41 59.85 0.62 1.17 16 2 N -0.62 -5.05 3.27 -189.52 -0.62 -5.67 16 3 C 0.07 0.40 9.74 59.84 0.58 0.99 16 4 C 0.51 5.50 7.74 -10.98 -0.09 5.42 16 5 O -0.54 -7.27 15.25 5.56 0.08 -7.19 16 6 C 0.11 1.16 4.97 -5.19 -0.03 1.13 16 7 N -0.73 -9.05 5.52 -62.94 -0.35 -9.39 16 8 C 0.54 8.20 6.77 -13.04 -0.09 8.11 16 9 O -0.51 -9.79 12.17 5.18 0.06 -9.73 16 10 C -0.26 -3.47 9.90 -37.50 -0.37 -3.84 16 11 C 0.03 0.40 9.80 -37.19 -0.36 0.04 16 12 C -0.19 -3.50 4.54 -105.03 -0.48 -3.98 16 13 C 0.01 0.23 6.59 -39.15 -0.26 -0.02 16 14 C -0.20 -4.62 9.97 -39.47 -0.39 -5.01 16 15 C 0.17 4.33 6.66 -38.88 -0.26 4.07 16 16 O -0.17 -5.07 9.74 0.74 0.01 -5.06 16 17 C -0.39 -11.06 9.48 30.91 0.29 -10.76 16 18 H 0.09 2.45 5.18 -52.49 -0.27 2.18 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 21 Si 0.94 20.66 29.55 -169.99 -5.02 15.63 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 C -0.25 -5.70 9.14 -39.47 -0.36 -6.06 16 26 C -0.04 -0.80 9.78 -39.15 -0.38 -1.18 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.30 7.92 -51.93 -0.41 -0.12 16 29 H 0.08 0.60 7.42 -51.93 -0.39 0.22 16 30 H 0.07 0.38 7.85 -51.93 -0.41 -0.03 16 31 H 0.08 0.29 7.79 -51.93 -0.40 -0.12 16 32 H 0.07 0.37 7.85 -51.93 -0.41 -0.04 16 33 H 0.10 1.04 7.87 -51.93 -0.41 0.63 16 34 H 0.10 1.07 7.86 -51.93 -0.41 0.66 16 35 H 0.41 4.63 7.42 -40.82 -0.30 4.33 16 36 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.10 1.84 7.02 -52.48 -0.37 1.47 16 39 H 0.11 2.50 8.06 -52.49 -0.42 2.08 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.13 2.82 5.62 -52.49 -0.29 2.53 16 42 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -35.50 360.00 -6.64 -42.14 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.32 Total: 7.45 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.66 Total: -8.96 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: -0.21 Total: -39.71 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.15 Total: -21.97 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.50 -6.64 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490608602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.656 kcal (2) G-P(sol) polarization free energy of solvation -35.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds