Wall clock time and date at job start Fri Apr 10 2020 18:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.47104 * 2 1 4 4 C 1.36749 * 119.99630 * 264.49283 * 3 2 1 5 5 H 1.08002 * 119.99857 * 142.29266 * 4 3 2 6 6 C 1.39088 * 120.00319 * 322.28306 * 4 3 2 7 7 N 1.31345 * 119.99843 * 340.14742 * 6 4 3 8 8 Si 1.86796 * 120.00174 * 160.14397 * 6 4 3 9 9 H 1.48493 * 109.47432 * 59.99795 * 8 6 4 10 10 H 1.48506 * 109.47390 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46883 * 299.99924 * 8 6 4 12 12 C 1.34774 * 119.99894 * 84.49214 * 3 2 1 13 13 O 1.21778 * 119.99720 * 180.02562 * 12 3 2 14 14 C 1.41806 * 120.00016 * 0.27523 * 12 3 2 15 15 C 1.35130 * 119.99814 * 172.51303 * 14 12 3 16 16 C 1.46946 * 120.00184 * 348.02555 * 15 14 12 17 17 C 1.40011 * 120.11516 * 316.41801 * 16 15 14 18 18 C 1.37658 * 119.87951 * 179.72039 * 17 16 15 19 19 C 1.39028 * 120.11695 * 0.55310 * 18 17 16 20 20 O 1.35742 * 119.88277 * 179.74127 * 19 18 17 21 21 C 1.42898 * 117.00007 * 359.97438 * 20 19 18 22 22 C 1.50698 * 109.47251 * 179.97438 * 21 20 19 23 23 N 1.34777 * 120.00082 * 180.02562 * 22 21 20 24 24 O 1.21279 * 119.99713 * 0.02562 * 22 21 20 25 25 C 1.39031 * 120.23394 * 359.72532 * 19 18 17 26 26 C 1.37653 * 120.11597 * 359.97438 * 25 19 18 27 27 H 1.09011 * 109.47143 * 299.99890 * 1 2 3 28 28 H 1.08997 * 109.47297 * 59.99762 * 1 2 3 29 29 H 1.09001 * 109.47233 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46969 * 240.00341 * 2 1 3 31 31 H 1.08997 * 109.47297 * 120.00238 * 2 1 3 32 32 H 0.97011 * 119.99935 * 180.02562 * 7 6 4 33 33 H 1.08002 * 119.99857 * 352.51399 * 14 12 3 34 34 H 1.08002 * 119.99696 * 168.02528 * 15 14 12 35 35 H 1.07998 * 120.05406 * 359.97438 * 17 16 15 36 36 H 1.07996 * 119.94044 * 180.25742 * 18 17 16 37 37 H 1.08998 * 109.46884 * 300.00279 * 21 20 19 38 38 H 1.09005 * 109.47006 * 59.99550 * 21 20 19 39 39 H 0.96998 * 120.00100 * 359.97438 * 23 22 21 40 40 H 0.96997 * 119.99602 * 180.02562 * 23 22 21 41 41 H 1.07995 * 119.93744 * 179.97438 * 25 19 18 42 42 H 1.08004 * 120.05474 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3533 1.9880 -1.1789 5 1 2.1289 3.0334 -1.3310 6 6 2.9833 1.2588 -2.1819 7 7 3.6022 0.1379 -1.8890 8 14 2.9492 1.8736 -3.9454 9 1 3.5918 3.2104 -4.0162 10 1 3.6866 0.9226 -4.8156 11 1 1.5413 1.9761 -4.4067 12 6 2.1373 2.0539 1.1618 13 8 2.5428 3.2022 1.1617 14 6 1.7953 1.4228 2.3848 15 6 2.0556 2.0389 3.5589 16 6 2.9199 3.2269 3.5895 17 6 4.1041 3.2536 2.8429 18 6 4.9073 4.3712 2.8707 19 6 4.5502 5.4677 3.6472 20 8 5.3484 6.5653 3.6752 21 6 6.5375 6.5231 2.8838 22 6 7.2905 7.8192 3.0388 23 7 8.4509 8.0074 2.3796 24 8 6.8522 8.6929 3.7567 25 6 3.3784 5.4442 4.3950 26 6 2.5650 4.3340 4.3696 27 1 -0.3634 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 4.0419 -0.3705 -2.5885 33 1 1.3269 0.4497 2.3777 34 1 1.6283 1.6582 4.4748 35 1 4.3847 2.4004 2.2432 36 1 5.8187 4.3944 2.2919 37 1 7.1652 5.6959 3.2151 38 1 6.2719 6.3806 1.8362 39 1 8.8016 7.3085 1.8057 40 1 8.9357 8.8416 2.4798 41 1 3.1059 6.2985 4.9969 42 1 1.6547 4.3170 4.9506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491332582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:46 Heat of formation + Delta-G solvation = -42.808057 kcal Electronic energy + Delta-G solvation = -26216.494572 eV Core-core repulsion = 22356.459550 eV Total energy + Delta-G solvation = -3860.035022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21577 -39.33520 -38.67538 -36.97440 -35.03099 -33.95652 -32.80934 -32.02304 -30.60937 -29.48215 -29.27566 -27.75957 -25.35555 -23.11871 -22.55279 -22.16426 -20.89922 -20.56479 -18.21851 -17.95790 -17.77496 -16.95967 -16.46719 -16.40459 -16.30886 -15.33628 -15.16601 -14.66758 -14.28098 -14.15904 -13.98931 -13.72357 -13.42294 -13.05734 -12.88062 -12.82704 -12.49153 -12.42574 -12.11402 -11.81984 -11.56915 -11.20849 -11.09250 -10.99147 -10.76263 -10.50685 -10.48379 -10.41328 -10.12854 -10.07929 -9.99234 -9.07918 -8.93600 -8.58497 -8.23594 -7.46341 -7.09103 -6.41973 -3.99997 1.35326 1.96576 2.35692 2.47991 2.69300 3.15724 3.19110 3.23310 3.82840 4.09185 4.35394 4.47105 4.57880 4.90379 4.93869 4.99576 5.07484 5.29982 5.34317 5.35813 5.68327 5.80357 5.82509 5.87224 6.04632 6.18287 6.19240 6.26196 6.45711 6.47416 6.52989 6.60658 6.75983 6.82184 6.87836 6.95141 7.01196 7.19175 7.19938 7.25607 7.49771 7.72484 7.98313 8.22738 8.49248 9.16694 9.35934 10.03466 10.60716 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012375 B = 0.003683 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.065235 B = 7600.932394 C = 9432.685268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.096 3.904 3 N -0.426 5.426 4 C -0.302 4.302 5 H 0.091 0.909 6 C 0.038 3.962 7 N -0.865 5.865 8 Si 0.917 3.083 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.470 3.530 13 O -0.572 6.572 14 C -0.181 4.181 15 C -0.070 4.070 16 C -0.078 4.078 17 C 0.018 3.982 18 C -0.219 4.219 19 C 0.122 3.878 20 O -0.296 6.296 21 C 0.040 3.960 22 C 0.522 3.478 23 N -0.852 5.852 24 O -0.522 6.522 25 C -0.166 4.166 26 C -0.072 4.072 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.108 0.892 31 H 0.050 0.950 32 H 0.269 0.731 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.404 0.596 40 H 0.406 0.594 41 H 0.123 0.877 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.909 2.619 7.516 9.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.143 5.143 4 C -0.430 4.430 5 H 0.109 0.891 6 C -0.167 4.167 7 N -0.502 5.502 8 Si 0.744 3.256 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.262 3.738 13 O -0.458 6.458 14 C -0.202 4.202 15 C -0.092 4.092 16 C -0.078 4.078 17 C -0.001 4.001 18 C -0.238 4.238 19 C 0.078 3.922 20 O -0.209 6.209 21 C -0.039 4.039 22 C 0.305 3.695 23 N -0.419 5.419 24 O -0.396 6.396 25 C -0.184 4.184 26 C -0.091 4.091 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.126 0.874 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.232 0.768 40 H 0.238 0.762 41 H 0.141 0.859 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.727 3.627 7.960 9.943 hybrid contribution 0.401 -0.236 -1.589 1.656 sum 5.128 3.391 6.371 8.854 Atomic orbital electron populations 1.22236 0.98063 1.00375 1.01690 1.21581 0.91766 0.85708 1.03784 1.43566 1.53840 1.11435 1.05466 1.19404 1.36196 0.96965 0.90451 0.89125 1.25408 0.94311 0.96415 1.00576 1.69883 1.30423 1.16071 1.33817 0.86144 0.78633 0.78826 0.82023 1.19702 1.20907 1.19810 1.17136 0.84145 0.88274 0.84213 1.90717 1.50462 1.18197 1.86416 1.22474 1.03445 1.00130 0.94182 1.22040 0.96055 0.94085 0.96998 1.18714 0.95386 0.94778 0.98925 1.20906 0.91360 0.97043 0.90771 1.20931 1.03069 0.95068 1.04685 1.19042 0.91163 0.85411 0.96594 1.86033 1.32404 1.37425 1.65011 1.22373 0.87511 0.96225 0.97815 1.20185 0.81129 0.88657 0.79508 1.43662 1.24806 1.22457 1.50978 1.90786 1.67016 1.44347 1.37478 1.20029 0.94306 0.99977 1.04115 1.20876 0.98093 0.92143 0.97952 0.93658 0.92503 0.93092 0.87435 0.93143 0.92038 0.86317 0.86092 0.86226 0.86302 0.88952 0.88635 0.76757 0.76215 0.85940 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.03 37.15 0.37 -2.54 16 2 C 0.10 2.01 5.26 -4.04 -0.02 1.99 16 3 N -0.43 -10.44 2.52 -118.00 -0.30 -10.74 16 4 C -0.30 -8.08 8.90 -15.04 -0.13 -8.21 16 5 H 0.09 2.57 7.76 -52.49 -0.41 2.16 16 6 C 0.04 0.96 4.94 -17.44 -0.09 0.88 16 7 N -0.86 -22.32 11.46 55.50 0.64 -21.68 16 8 Si 0.92 19.93 29.60 -169.99 -5.03 14.90 16 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 12 C 0.47 11.14 6.40 -14.90 -0.10 11.04 16 13 O -0.57 -15.04 11.99 5.12 0.06 -14.97 16 14 C -0.18 -3.43 8.48 -39.32 -0.33 -3.77 16 15 C -0.07 -1.18 9.80 -37.16 -0.36 -1.55 16 16 C -0.08 -1.42 4.47 -105.05 -0.47 -1.89 16 17 C 0.02 0.35 6.67 -39.13 -0.26 0.09 16 18 C -0.22 -3.86 9.01 -39.50 -0.36 -4.22 16 19 C 0.12 2.13 6.70 -38.99 -0.26 1.87 16 20 O -0.30 -4.91 9.66 -38.85 -0.38 -5.29 16 21 C 0.04 0.48 5.21 36.00 0.19 0.67 16 22 C 0.52 6.34 8.18 -10.99 -0.09 6.25 16 23 N -0.85 -6.01 8.87 31.22 0.28 -5.74 16 24 O -0.52 -8.89 17.34 -14.35 -0.25 -9.14 16 25 C -0.17 -2.79 9.97 -39.50 -0.39 -3.18 16 26 C -0.07 -1.20 9.79 -39.13 -0.38 -1.58 16 27 H 0.04 0.76 7.39 -51.92 -0.38 0.37 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.11 2.49 5.54 -51.93 -0.29 2.20 16 31 H 0.05 0.97 6.51 -51.93 -0.34 0.63 16 32 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 33 H 0.12 1.95 5.88 -52.49 -0.31 1.65 16 34 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.12 2.53 7.06 -52.49 -0.37 2.16 16 36 H 0.12 1.80 6.27 -52.49 -0.33 1.47 16 37 H 0.09 0.88 7.65 -51.93 -0.40 0.48 16 38 H 0.10 1.06 7.65 -51.93 -0.40 0.67 16 39 H 0.40 1.61 8.83 -40.82 -0.36 1.25 16 40 H 0.41 2.37 8.93 -40.82 -0.36 2.01 16 41 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -34.55 354.80 -7.51 -42.07 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.19 Total: 9.40 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.69 Total: -4.15 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.62 Total: -38.16 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.56 Total: -29.40 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.55 -7.51 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491332582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.741 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds