Wall clock time and date at job start Fri Apr 10 2020 18:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.47104 * 2 1 4 4 C 1.36749 * 119.99630 * 264.49283 * 3 2 1 5 5 H 1.08002 * 119.99857 * 142.29266 * 4 3 2 6 6 C 1.39088 * 120.00319 * 322.28306 * 4 3 2 7 7 N 1.31345 * 119.99843 * 340.14742 * 6 4 3 8 8 Si 1.86796 * 120.00174 * 160.14397 * 6 4 3 9 9 H 1.48493 * 109.47432 * 59.99795 * 8 6 4 10 10 H 1.48506 * 109.47390 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46883 * 299.99924 * 8 6 4 12 12 C 1.34774 * 119.99894 * 84.49214 * 3 2 1 13 13 O 1.21778 * 119.99720 * 180.02562 * 12 3 2 14 14 C 1.41806 * 120.00016 * 0.27523 * 12 3 2 15 15 C 1.35130 * 119.99814 * 172.51303 * 14 12 3 16 16 C 1.46946 * 120.00184 * 348.02555 * 15 14 12 17 17 C 1.40011 * 120.11516 * 316.41801 * 16 15 14 18 18 C 1.37658 * 119.87951 * 179.72039 * 17 16 15 19 19 C 1.39028 * 120.11695 * 0.55310 * 18 17 16 20 20 O 1.35742 * 119.88277 * 179.74127 * 19 18 17 21 21 C 1.42898 * 117.00007 * 359.97438 * 20 19 18 22 22 C 1.50698 * 109.47251 * 179.97438 * 21 20 19 23 23 N 1.34777 * 120.00082 * 180.02562 * 22 21 20 24 24 O 1.21279 * 119.99713 * 0.02562 * 22 21 20 25 25 C 1.39031 * 120.23394 * 359.72532 * 19 18 17 26 26 C 1.37653 * 120.11597 * 359.97438 * 25 19 18 27 27 H 1.09011 * 109.47143 * 299.99890 * 1 2 3 28 28 H 1.08997 * 109.47297 * 59.99762 * 1 2 3 29 29 H 1.09001 * 109.47233 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46969 * 240.00341 * 2 1 3 31 31 H 1.08997 * 109.47297 * 120.00238 * 2 1 3 32 32 H 0.97011 * 119.99935 * 180.02562 * 7 6 4 33 33 H 1.08002 * 119.99857 * 352.51399 * 14 12 3 34 34 H 1.08002 * 119.99696 * 168.02528 * 15 14 12 35 35 H 1.07998 * 120.05406 * 359.97438 * 17 16 15 36 36 H 1.07996 * 119.94044 * 180.25742 * 18 17 16 37 37 H 1.08998 * 109.46884 * 300.00279 * 21 20 19 38 38 H 1.09005 * 109.47006 * 59.99550 * 21 20 19 39 39 H 0.96998 * 120.00100 * 359.97438 * 23 22 21 40 40 H 0.96997 * 119.99602 * 180.02562 * 23 22 21 41 41 H 1.07995 * 119.93744 * 179.97438 * 25 19 18 42 42 H 1.08004 * 120.05474 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3533 1.9880 -1.1789 5 1 2.1289 3.0334 -1.3310 6 6 2.9833 1.2588 -2.1819 7 7 3.6022 0.1379 -1.8890 8 14 2.9492 1.8736 -3.9454 9 1 3.5918 3.2104 -4.0162 10 1 3.6866 0.9226 -4.8156 11 1 1.5413 1.9761 -4.4067 12 6 2.1373 2.0539 1.1618 13 8 2.5428 3.2022 1.1617 14 6 1.7953 1.4228 2.3848 15 6 2.0556 2.0389 3.5589 16 6 2.9199 3.2269 3.5895 17 6 4.1041 3.2536 2.8429 18 6 4.9073 4.3712 2.8707 19 6 4.5502 5.4677 3.6472 20 8 5.3484 6.5653 3.6752 21 6 6.5375 6.5231 2.8838 22 6 7.2905 7.8192 3.0388 23 7 8.4509 8.0074 2.3796 24 8 6.8522 8.6929 3.7567 25 6 3.3784 5.4442 4.3950 26 6 2.5650 4.3340 4.3696 27 1 -0.3634 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 4.0419 -0.3705 -2.5885 33 1 1.3269 0.4497 2.3777 34 1 1.6283 1.6582 4.4748 35 1 4.3847 2.4004 2.2432 36 1 5.8187 4.3944 2.2919 37 1 7.1652 5.6959 3.2151 38 1 6.2719 6.3806 1.8362 39 1 8.8016 7.3085 1.8057 40 1 8.9357 8.8416 2.4798 41 1 3.1059 6.2985 4.9969 42 1 1.6547 4.3170 4.9506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491332582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:45 Heat of formation + Delta-G solvation = -66.523456 kcal Electronic energy + Delta-G solvation = -26217.522949 eV Core-core repulsion = 22356.459550 eV Total energy + Delta-G solvation = -3861.063399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42754 -40.77979 -40.02234 -38.33799 -36.76916 -34.83738 -34.37651 -33.78212 -31.95116 -31.12011 -30.51423 -28.99581 -27.13002 -24.65448 -23.94213 -23.58869 -22.31215 -21.67009 -19.61043 -19.36781 -18.79638 -18.59997 -18.05146 -17.44956 -17.38374 -16.95034 -16.60181 -16.27279 -15.60067 -15.58262 -15.37524 -14.98377 -14.87330 -14.57671 -14.38920 -14.23228 -14.02908 -13.66320 -13.53137 -13.39185 -13.17068 -12.86014 -12.69090 -12.44129 -12.24494 -12.16613 -12.01068 -11.85596 -11.72807 -11.16505 -10.88750 -10.80929 -10.39919 -10.21773 -9.74945 -9.29963 -8.53809 -8.31909 -5.99948 -0.05229 0.60093 1.07140 1.40391 1.40678 1.42185 1.50130 1.70361 2.29896 2.67088 2.83760 2.99088 3.20154 3.30149 3.74959 3.94347 3.99817 4.02602 4.04690 4.09467 4.28377 4.37807 4.49500 4.56623 4.64318 4.68432 4.84129 4.86349 5.04345 5.17072 5.21471 5.31499 5.34764 5.45021 5.50124 5.57130 5.64398 5.74625 5.86746 5.89720 6.25864 6.27087 6.46371 6.63995 7.18556 7.26666 7.55240 8.21183 8.68998 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012375 B = 0.003683 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.065235 B = 7600.932394 C = 9432.685268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.097 3.903 3 N -0.446 5.446 4 C -0.334 4.334 5 H 0.059 0.941 6 C 0.007 3.993 7 N -0.885 5.885 8 Si 0.975 3.025 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.267 1.267 12 C 0.466 3.534 13 O -0.609 6.609 14 C -0.213 4.213 15 C -0.033 4.033 16 C -0.105 4.105 17 C -0.003 4.003 18 C -0.228 4.228 19 C 0.120 3.880 20 O -0.314 6.314 21 C 0.031 3.969 22 C 0.523 3.477 23 N -0.824 5.824 24 O -0.578 6.578 25 C -0.176 4.176 26 C -0.065 4.065 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.273 0.727 33 H 0.146 0.854 34 H 0.172 0.828 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.422 0.578 40 H 0.416 0.584 41 H 0.140 0.860 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 2.113 8.558 9.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.027 4.027 3 N -0.164 5.164 4 C -0.463 4.463 5 H 0.077 0.923 6 C -0.196 4.196 7 N -0.523 5.523 8 Si 0.799 3.201 9 H -0.204 1.204 10 H -0.195 1.195 11 H -0.192 1.192 12 C 0.260 3.740 13 O -0.498 6.498 14 C -0.233 4.233 15 C -0.053 4.053 16 C -0.106 4.106 17 C -0.021 4.021 18 C -0.246 4.246 19 C 0.075 3.925 20 O -0.227 6.227 21 C -0.047 4.047 22 C 0.307 3.693 23 N -0.391 5.391 24 O -0.457 6.457 25 C -0.194 4.194 26 C -0.082 4.082 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.163 0.837 34 H 0.189 0.811 35 H 0.109 0.891 36 H 0.153 0.847 37 H 0.139 0.861 38 H 0.123 0.877 39 H 0.254 0.746 40 H 0.249 0.751 41 H 0.158 0.842 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.535 3.082 8.973 10.516 hybrid contribution 0.613 0.039 -1.782 1.885 sum 5.148 3.120 7.191 9.378 Atomic orbital electron populations 1.22120 0.95431 1.02391 1.01236 1.21627 0.93891 0.83891 1.03272 1.43758 1.54885 1.12649 1.05095 1.19248 1.38244 0.96247 0.92567 0.92270 1.26024 0.93500 0.96549 1.03488 1.69948 1.30735 1.16768 1.34823 0.85281 0.78795 0.78065 0.77938 1.20380 1.19543 1.19245 1.17909 0.82670 0.87894 0.85529 1.90683 1.51835 1.19941 1.87311 1.22386 1.06565 1.01814 0.92580 1.22589 0.92708 0.91938 0.98109 1.19048 0.95523 0.96411 0.99583 1.20829 0.92993 0.96877 0.91435 1.21107 1.03711 0.94766 1.05051 1.19195 0.91572 0.85385 0.96304 1.86011 1.33737 1.37132 1.65847 1.22698 0.86650 0.97421 0.97972 1.20232 0.81946 0.87911 0.79195 1.43435 1.22915 1.23322 1.49384 1.90765 1.68768 1.45910 1.40295 1.20414 0.94192 1.00769 1.04071 1.21232 0.98889 0.91038 0.97082 0.92608 0.94396 0.89738 0.89895 0.91532 0.91693 0.83658 0.81056 0.89066 0.84707 0.86128 0.87678 0.74610 0.75061 0.84249 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 10.03 71.98 0.72 -4.50 16 2 C 0.10 4.06 5.26 86.38 0.45 4.51 16 3 N -0.45 -22.47 2.52 -645.42 -1.63 -24.10 16 4 C -0.33 -18.69 8.90 84.13 0.75 -17.94 16 5 H 0.06 3.58 7.76 -2.91 -0.02 3.55 16 6 C 0.01 0.38 4.94 84.97 0.42 0.80 16 7 N -0.89 -46.61 11.46 21.69 0.25 -46.36 16 8 Si 0.98 41.68 29.60 68.60 2.03 43.71 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 12 C 0.47 22.50 6.40 85.12 0.55 23.04 16 13 O -0.61 -33.12 11.99 -4.60 -0.06 -33.17 16 14 C -0.21 -7.77 8.48 22.44 0.19 -7.58 16 15 C -0.03 -1.02 9.80 23.84 0.23 -0.78 16 16 C -0.11 -3.73 4.47 -20.14 -0.09 -3.82 16 17 C 0.00 -0.10 6.67 22.56 0.15 0.05 16 18 C -0.23 -8.08 9.01 22.32 0.20 -7.87 16 19 C 0.12 4.13 6.70 22.65 0.15 4.28 16 20 O -0.31 -10.29 9.66 -71.63 -0.69 -10.98 16 21 C 0.03 0.72 5.21 71.24 0.37 1.09 16 22 C 0.52 12.28 8.18 87.66 0.72 12.99 16 23 N -0.82 -10.13 8.87 -173.54 -1.54 -11.67 16 24 O -0.58 -19.77 17.34 16.01 0.28 -19.49 16 25 C -0.18 -5.66 9.97 22.32 0.22 -5.44 16 26 C -0.06 -1.98 9.79 22.56 0.22 -1.76 16 27 H 0.05 1.77 7.39 -2.38 -0.02 1.75 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 3.90 5.54 -2.39 -0.01 3.89 16 31 H 0.07 2.51 6.51 -2.39 -0.02 2.49 16 32 H 0.27 13.46 8.31 -92.70 -0.77 12.69 16 33 H 0.15 4.42 5.88 -2.91 -0.02 4.40 16 34 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.09 4.05 7.06 -2.91 -0.02 4.03 16 36 H 0.14 4.10 6.27 -2.91 -0.02 4.08 16 37 H 0.12 2.10 7.65 -2.39 -0.02 2.08 16 38 H 0.11 2.25 7.65 -2.38 -0.02 2.23 16 39 H 0.42 2.34 8.83 -92.71 -0.82 1.52 16 40 H 0.42 4.10 8.93 -92.71 -0.83 3.28 16 41 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 42 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -79.63 354.80 3.33 -76.30 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.57 Total: 28.70 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 5.26 Total: -2.94 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -2.92 Total: -82.13 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -0.47 Total: -63.64 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -79.63 3.33 -76.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491332582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.773 kcal (2) G-P(sol) polarization free energy of solvation -79.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds