Wall clock time and date at job start Fri Apr 10 2020 18:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46494 * 119.99929 * 2 1 4 4 C 1.50699 * 109.47025 * 269.99480 * 3 2 1 5 5 H 1.08001 * 119.99718 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00308 * 180.02562 * 4 3 2 7 7 N 1.31521 * 120.00132 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00167 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47346 * 89.99964 * 8 6 4 10 10 H 1.48499 * 109.47235 * 209.99999 * 8 6 4 11 11 H 1.48498 * 109.47014 * 329.99794 * 8 6 4 12 12 C 1.34774 * 119.99958 * 179.97438 * 2 1 3 13 13 O 1.21716 * 120.00202 * 180.02562 * 12 2 1 14 14 C 1.46259 * 119.99847 * 0.02562 * 12 2 1 15 15 C 1.34980 * 119.99845 * 173.17710 * 14 12 2 16 16 C 1.47003 * 120.00024 * 348.84563 * 15 14 12 17 17 C 1.39972 * 120.11112 * 316.29884 * 16 15 14 18 18 C 1.37668 * 119.88169 * 179.69646 * 17 16 15 19 19 C 1.39015 * 120.11405 * 0.60303 * 18 17 16 20 20 O 1.35739 * 119.88492 * 179.69451 * 19 18 17 21 21 C 1.42902 * 116.99890 * 359.97438 * 20 19 18 22 22 C 1.50708 * 109.47027 * 179.97438 * 21 20 19 23 23 N 1.34773 * 120.00100 * 179.97438 * 22 21 20 24 24 O 1.21288 * 119.99765 * 0.02562 * 22 21 20 25 25 C 1.39019 * 120.23074 * 359.67402 * 19 18 17 26 26 C 1.37667 * 120.10988 * 0.02562 * 25 19 18 27 27 H 1.09000 * 109.47227 * 270.00397 * 1 2 3 28 28 H 1.08996 * 109.47158 * 30.00428 * 1 2 3 29 29 H 1.09007 * 109.46767 * 150.00331 * 1 2 3 30 30 H 1.09005 * 109.47462 * 29.99219 * 3 2 1 31 31 H 1.09002 * 109.47163 * 149.99396 * 3 2 1 32 32 H 0.96996 * 119.99916 * 180.02562 * 7 6 4 33 33 H 1.07992 * 120.00497 * 352.89914 * 14 12 2 34 34 H 1.07998 * 120.00400 * 168.84202 * 15 14 12 35 35 H 1.07998 * 120.05856 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.93965 * 180.27731 * 18 17 16 37 37 H 1.08991 * 109.47104 * 299.99439 * 21 20 19 38 38 H 1.08999 * 109.46827 * 60.00333 * 21 20 19 39 39 H 0.96995 * 119.99895 * 359.97438 * 23 22 21 40 40 H 0.96994 * 119.99849 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.94388 * 180.02562 * 25 19 18 42 42 H 1.08000 * 120.05587 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0982 1.0955 -2.2417 6 6 3.1270 2.8773 -1.6728 7 7 3.5542 3.6175 -0.6733 8 14 3.4378 3.4167 -3.4340 9 1 2.3080 4.2603 -3.9001 10 1 4.6984 4.1990 -3.4970 11 1 3.5540 2.2197 -4.3052 12 6 2.1389 -1.1672 0.0005 13 8 3.3560 -1.1672 0.0010 14 6 1.4075 -2.4338 0.0005 15 6 2.0753 -3.5986 -0.1378 16 6 3.4916 -3.5917 -0.5316 17 6 3.9312 -2.7463 -1.5569 18 6 5.2598 -2.7390 -1.9177 19 6 6.1618 -3.5785 -1.2741 20 8 7.4696 -3.5720 -1.6378 21 6 7.8465 -2.6791 -2.6879 22 6 9.3246 -2.8095 -2.9518 23 7 9.9072 -2.0589 -3.9076 24 8 9.9895 -3.5906 -2.3047 25 6 5.7293 -4.4242 -0.2591 26 6 4.4040 -4.4346 0.1134 27 1 -0.3634 0.0001 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6084 2.0284 0.5137 31 1 3.1499 1.1384 0.5139 32 1 4.0311 4.4434 -0.8506 33 1 0.3338 -2.4374 0.1157 34 1 1.5692 -4.5358 0.0408 35 1 3.2302 -2.0976 -2.0611 36 1 5.6008 -2.0838 -2.7056 37 1 7.2922 -2.9278 -3.5927 38 1 7.6196 -1.6547 -2.3926 39 1 9.3752 -1.4351 -4.4258 40 1 10.8584 -2.1432 -4.0777 41 1 6.4341 -5.0741 0.2380 42 1 4.0690 -5.0917 0.9023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491353762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:48 Heat of formation + Delta-G solvation = -48.598430 kcal Electronic energy + Delta-G solvation = -26161.238701 eV Core-core repulsion = 22300.952589 eV Total energy + Delta-G solvation = -3860.286112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.32138 -39.47074 -38.79276 -37.09127 -34.81075 -33.96121 -33.16874 -32.56346 -30.78835 -29.49946 -28.22616 -27.45449 -25.78822 -23.97593 -22.73420 -22.28684 -20.80523 -20.40099 -18.33572 -17.97931 -17.78382 -16.78262 -16.55340 -16.49550 -16.37443 -15.51461 -15.41189 -14.68142 -14.39671 -14.32552 -14.23195 -13.98977 -13.57777 -13.48707 -13.09746 -12.59455 -12.50481 -12.36571 -12.17852 -12.15237 -11.81423 -11.35020 -11.22587 -11.03906 -10.88826 -10.67496 -10.58437 -10.19659 -10.12476 -9.99287 -9.68179 -9.32639 -9.00092 -8.51667 -8.48050 -7.57960 -7.40400 -6.08225 -4.13267 1.09200 1.77279 2.22300 2.35329 2.63550 3.23373 3.29768 3.32706 3.76463 4.01112 4.07677 4.15710 4.40113 4.55325 4.85057 4.96916 5.01233 5.09406 5.17929 5.23096 5.28452 5.52445 5.60143 5.65671 5.73189 5.93418 5.97438 6.16811 6.26693 6.29238 6.44923 6.46607 6.59559 6.74100 6.90868 6.93686 7.04405 7.11713 7.43861 7.53821 7.56305 7.88456 7.97159 8.20080 8.44240 8.87090 9.12977 9.51667 10.99666 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009097 B = 0.004540 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.273711 B = 6166.398734 C = 8760.190758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.597 5.597 3 C 0.245 3.755 4 C -0.523 4.523 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.526 3.474 13 O -0.528 6.528 14 C -0.207 4.207 15 C -0.038 4.038 16 C -0.102 4.102 17 C 0.016 3.984 18 C -0.216 4.216 19 C 0.133 3.867 20 O -0.294 6.294 21 C 0.038 3.962 22 C 0.522 3.478 23 N -0.852 5.852 24 O -0.523 6.523 25 C -0.165 4.165 26 C -0.064 4.064 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.030 0.970 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.405 0.595 40 H 0.407 0.593 41 H 0.126 0.874 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 -13.170 -4.782 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.329 5.329 3 C 0.126 3.874 4 C -0.562 4.562 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.315 3.685 13 O -0.408 6.408 14 C -0.227 4.227 15 C -0.057 4.057 16 C -0.102 4.102 17 C -0.002 4.002 18 C -0.234 4.234 19 C 0.088 3.912 20 O -0.206 6.206 21 C -0.041 4.041 22 C 0.306 3.694 23 N -0.418 5.418 24 O -0.397 6.397 25 C -0.184 4.184 26 C -0.082 4.082 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.233 0.767 40 H 0.239 0.761 41 H 0.144 0.856 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.451 -13.619 -4.117 14.301 hybrid contribution -0.031 1.212 -1.395 1.848 sum 1.420 -12.407 -5.512 13.650 Atomic orbital electron populations 1.21663 0.81610 1.02479 1.00385 1.48146 1.06113 1.07969 1.70630 1.19269 0.92587 0.78142 0.97420 1.21410 1.36369 1.06221 0.92239 0.92547 1.24934 0.95471 0.96432 0.97263 1.69937 1.38394 1.14292 1.30668 0.86534 0.77741 0.78572 0.84773 1.20617 1.21128 1.19966 1.18271 0.87729 0.84131 0.78417 1.90840 1.13164 1.86780 1.49971 1.23308 1.00020 0.93409 1.06007 1.22203 0.92736 0.97197 0.93593 1.18744 0.93337 0.99353 0.98814 1.20908 0.94829 0.91326 0.93166 1.21001 0.94443 1.03178 1.04817 1.19103 0.81701 0.95655 0.94771 1.86043 1.23741 1.59243 1.51612 1.22428 0.93164 0.96155 0.92366 1.20137 0.89350 0.80237 0.79684 1.43654 1.13838 1.44695 1.39613 1.90789 1.65047 1.36230 1.47632 1.20086 0.96153 1.02685 0.99466 1.20881 0.91883 0.97409 0.98057 0.93823 0.90880 0.92277 0.95191 0.93785 0.92726 0.85453 0.85395 0.86163 0.85875 0.88835 0.88343 0.76678 0.76147 0.85600 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.10 59.85 0.60 1.89 16 2 N -0.60 -12.50 2.86 -184.67 -0.53 -13.03 16 3 C 0.25 6.33 5.16 -5.20 -0.03 6.30 16 4 C -0.52 -14.40 9.39 -34.44 -0.32 -14.73 16 5 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 12 C 0.53 10.70 6.64 -13.04 -0.09 10.61 16 13 O -0.53 -12.60 11.75 5.17 0.06 -12.54 16 14 C -0.21 -3.10 9.02 -37.52 -0.34 -3.44 16 15 C -0.04 -0.51 9.80 -37.19 -0.36 -0.87 16 16 C -0.10 -1.63 4.54 -105.05 -0.48 -2.11 16 17 C 0.02 0.28 6.59 -39.14 -0.26 0.03 16 18 C -0.22 -3.59 9.01 -39.50 -0.36 -3.95 16 19 C 0.13 2.18 6.70 -39.00 -0.26 1.92 16 20 O -0.29 -4.72 9.66 -38.83 -0.38 -5.09 16 21 C 0.04 0.46 5.21 36.01 0.19 0.65 16 22 C 0.52 6.43 8.18 -10.98 -0.09 6.34 16 23 N -0.85 -6.34 8.87 31.22 0.28 -6.06 16 24 O -0.52 -8.91 17.34 -14.36 -0.25 -9.16 16 25 C -0.17 -2.54 9.97 -39.50 -0.39 -2.94 16 26 C -0.06 -0.93 9.79 -39.14 -0.38 -1.32 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 29 H 0.06 0.74 6.20 -51.92 -0.32 0.42 16 30 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.13 1.49 6.34 -52.49 -0.33 1.16 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.12 2.26 7.02 -52.49 -0.37 1.89 16 36 H 0.12 1.82 6.27 -52.48 -0.33 1.49 16 37 H 0.09 0.88 7.65 -51.93 -0.40 0.48 16 38 H 0.10 1.13 7.65 -51.93 -0.40 0.73 16 39 H 0.40 1.84 8.83 -40.82 -0.36 1.48 16 40 H 0.41 2.53 8.93 -40.82 -0.36 2.16 16 41 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -37.19 361.06 -7.65 -44.84 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.33 Total: 4.99 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.66 Total: -0.01 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.49 Total: -44.48 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.56 Total: -26.79 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.19 -7.65 -44.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491353762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.757 kcal (2) G-P(sol) polarization free energy of solvation -37.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds