Wall clock time and date at job start Fri Apr 10 2020 18:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46998 * 2 1 4 4 C 1.50696 * 109.47284 * 239.99556 * 2 1 3 5 5 H 1.08003 * 119.99993 * 239.99792 * 4 2 1 6 6 C 1.37875 * 120.00407 * 59.99942 * 4 2 1 7 7 N 1.31520 * 119.99284 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00251 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47279 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46996 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47119 * 299.99643 * 8 6 4 12 12 N 1.46505 * 109.47218 * 119.99242 * 2 1 3 13 13 C 1.34782 * 120.00039 * 275.00154 * 12 2 1 14 14 O 1.21720 * 119.99949 * 359.97438 * 13 12 2 15 15 C 1.46259 * 119.99681 * 179.97438 * 13 12 2 16 16 C 1.34975 * 119.99330 * 173.21937 * 15 13 12 17 17 C 1.46998 * 120.00385 * 349.03329 * 16 15 13 18 18 C 1.39974 * 120.11257 * 316.08293 * 17 16 15 19 19 C 1.37665 * 119.88239 * 179.71542 * 18 17 16 20 20 C 1.39022 * 120.11520 * 0.58495 * 19 18 17 21 21 O 1.35735 * 119.88814 * 179.69533 * 20 19 18 22 22 C 1.42896 * 117.00034 * 359.97438 * 21 20 19 23 23 C 1.50704 * 109.47427 * 180.02562 * 22 21 20 24 24 N 1.34775 * 120.00103 * 179.97438 * 23 22 21 25 25 O 1.21282 * 119.99766 * 359.97438 * 23 22 21 26 26 C 1.39024 * 120.22557 * 359.66720 * 20 19 18 27 27 C 1.37656 * 120.11750 * 0.04973 * 26 20 19 28 28 H 1.08996 * 109.46856 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46964 * 60.00587 * 1 2 3 30 30 H 1.09000 * 109.47012 * 300.00051 * 1 2 3 31 31 H 0.97002 * 119.99146 * 179.97438 * 7 6 4 32 32 H 0.97000 * 119.99975 * 95.00410 * 12 2 1 33 33 H 1.07994 * 120.00271 * 353.22289 * 15 13 12 34 34 H 1.07998 * 119.99639 * 169.03835 * 16 15 13 35 35 H 1.07998 * 120.05797 * 359.97438 * 18 17 16 36 36 H 1.07994 * 119.94315 * 180.27356 * 19 18 17 37 37 H 1.09004 * 109.46964 * 299.99730 * 22 21 20 38 38 H 1.08998 * 109.47580 * 59.99661 * 22 21 20 39 39 H 0.97000 * 119.99955 * 0.02562 * 24 23 22 40 40 H 0.96999 * 119.99999 * 179.97438 * 24 23 22 41 41 H 1.08004 * 119.94145 * 180.02562 * 26 20 19 42 42 H 1.07997 * 120.06472 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9428 0.8294 -2.6034 8 14 2.3215 -1.1207 -4.0077 9 1 1.8260 -2.5206 -4.0074 10 1 1.8271 -0.4203 -5.2204 11 1 3.8065 -1.1212 -4.0079 12 7 2.0184 -0.6905 1.1963 13 6 2.1471 -0.0179 2.3572 14 8 1.8580 1.1632 2.4116 15 6 2.6341 -0.7075 3.5516 16 6 2.8933 -0.0076 4.6762 17 6 2.9207 1.4616 4.6378 18 6 3.5706 2.1247 3.5903 19 6 3.5883 3.5008 3.5559 20 6 2.9727 4.2318 4.5655 21 8 2.9983 5.5885 4.5302 22 6 3.6751 6.1961 3.4281 23 6 3.6008 7.6957 3.5579 24 7 4.1748 8.4820 2.6258 25 8 3.0246 8.1949 4.5010 26 6 2.3304 3.5781 5.6109 27 6 2.3019 2.2024 5.6516 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.7088 1.1609 -3.4845 32 1 2.2491 -1.6316 1.1528 33 1 2.7864 -1.7765 3.5337 34 1 3.0806 -0.5270 5.6044 35 1 4.0537 1.5578 2.8083 36 1 4.0856 4.0134 2.7458 37 1 4.7193 5.8833 3.4259 38 1 3.2015 5.8878 2.4961 39 1 4.6354 8.0827 1.8713 40 1 4.1266 9.4472 2.7091 41 1 1.8533 4.1505 6.3926 42 1 1.8024 1.6954 6.4639 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491880296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:55 Heat of formation + Delta-G solvation = -60.549199 kcal Electronic energy + Delta-G solvation = -25795.230370 eV Core-core repulsion = 21934.426035 eV Total energy + Delta-G solvation = -3860.804336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38679 -39.48956 -38.78849 -37.12476 -34.85402 -34.01711 -33.08486 -32.38174 -30.86791 -29.70679 -28.84160 -27.64375 -25.27741 -23.72565 -22.73677 -21.76130 -20.80887 -20.02403 -19.04894 -18.39664 -17.90235 -17.14950 -16.56366 -16.44938 -16.08479 -15.50913 -15.34814 -14.77352 -14.42352 -14.36696 -14.12080 -13.89082 -13.65700 -13.49671 -13.07245 -12.68685 -12.65149 -12.43870 -12.24607 -11.70068 -11.43796 -11.14186 -11.05372 -10.98248 -10.77056 -10.72528 -10.33331 -10.25479 -10.18435 -10.04587 -9.39183 -9.11310 -9.06146 -8.64115 -8.56049 -7.82554 -7.47038 -6.15062 -4.24527 1.04285 1.69776 2.16592 2.29799 2.57236 3.22444 3.27977 3.29050 3.69956 4.00329 4.07684 4.17707 4.41695 4.49099 4.77456 4.88471 4.97440 5.06047 5.09804 5.16981 5.38868 5.52740 5.57907 5.66534 5.89692 6.20110 6.24185 6.39080 6.41486 6.53833 6.66853 6.82033 6.84689 6.89871 6.97380 6.98508 7.14743 7.46058 7.48871 7.56614 7.69003 7.90531 7.91801 8.13436 8.67870 8.77221 9.15942 9.43642 10.90654 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.003317 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.741955 B = 8440.024864 C =10383.788777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.703 5.703 13 C 0.522 3.478 14 O -0.543 6.543 15 C -0.203 4.203 16 C -0.039 4.039 17 C -0.099 4.099 18 C 0.014 3.986 19 C -0.218 4.218 20 C 0.133 3.867 21 O -0.293 6.293 22 C 0.039 3.961 23 C 0.522 3.478 24 N -0.852 5.852 25 O -0.522 6.522 26 C -0.164 4.164 27 C -0.064 4.064 28 H 0.025 0.975 29 H 0.089 0.911 30 H 0.015 0.985 31 H 0.265 0.735 32 H 0.388 0.612 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.404 0.596 40 H 0.407 0.593 41 H 0.127 0.873 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.501 5.157 11.811 15.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.349 5.349 13 C 0.309 3.691 14 O -0.423 6.423 15 C -0.224 4.224 16 C -0.059 4.059 17 C -0.100 4.100 18 C -0.004 4.004 19 C -0.237 4.237 20 C 0.088 3.912 21 O -0.206 6.206 22 C -0.040 4.040 23 C 0.305 3.695 24 N -0.418 5.418 25 O -0.396 6.396 26 C -0.183 4.183 27 C -0.082 4.082 28 H 0.044 0.956 29 H 0.108 0.892 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.233 0.767 40 H 0.239 0.761 41 H 0.145 0.855 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.675 6.395 12.464 15.973 hybrid contribution 0.603 -0.963 -1.715 2.058 sum 8.279 5.432 10.748 14.614 Atomic orbital electron populations 1.22069 0.98527 0.99051 1.00875 1.18699 0.90969 0.93878 0.80028 0.93433 1.21200 1.32488 1.13236 0.90419 0.92179 1.24884 0.94798 0.94955 0.99027 1.69903 1.35770 1.22467 1.23940 0.86521 0.79130 0.79657 0.81852 1.20154 1.21125 1.20195 1.46559 1.64272 1.13559 1.10550 1.18386 0.79670 0.87224 0.83858 1.90832 1.51563 1.15273 1.84675 1.23250 1.04104 1.00327 0.94760 1.22181 0.94217 0.92453 0.97055 1.18739 1.02193 0.92676 0.96364 1.20868 0.93091 0.93061 0.93428 1.20979 1.07339 0.95237 1.00122 1.19096 0.96009 0.80957 0.95175 1.86051 1.72335 1.17767 1.44454 1.22420 0.99213 0.90816 0.91591 1.20132 0.78243 0.88756 0.82350 1.43656 1.59629 1.10625 1.27894 1.90794 1.41475 1.75849 1.31464 1.20105 1.05014 0.93915 0.99265 1.20902 0.97317 0.92540 0.97414 0.95571 0.89243 0.96626 0.92552 0.77976 0.85582 0.85367 0.86333 0.85923 0.88858 0.88422 0.76708 0.76116 0.85550 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 2 C 0.27 6.64 2.56 -69.08 -0.18 6.46 16 3 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 4 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.52 11.32 55.43 0.63 -23.89 16 8 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.70 -14.30 5.07 -56.37 -0.29 -14.59 16 13 C 0.52 10.04 6.75 -13.04 -0.09 9.96 16 14 O -0.54 -12.16 11.82 5.17 0.06 -12.10 16 15 C -0.20 -2.90 9.91 -37.52 -0.37 -3.27 16 16 C -0.04 -0.51 9.80 -37.19 -0.36 -0.87 16 17 C -0.10 -1.50 4.53 -105.04 -0.48 -1.97 16 18 C 0.01 0.23 6.59 -39.14 -0.26 -0.03 16 19 C -0.22 -3.32 9.01 -39.50 -0.36 -3.67 16 20 C 0.13 2.04 6.70 -39.00 -0.26 1.78 16 21 O -0.29 -4.42 9.66 -38.82 -0.37 -4.79 16 22 C 0.04 0.42 5.21 36.01 0.19 0.61 16 23 C 0.52 5.90 8.18 -10.98 -0.09 5.81 16 24 N -0.85 -5.48 8.87 31.22 0.28 -5.20 16 25 O -0.52 -8.46 17.34 -14.35 -0.25 -8.71 16 26 C -0.16 -2.41 9.97 -39.50 -0.39 -2.80 16 27 C -0.06 -0.88 9.79 -39.14 -0.38 -1.27 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.39 6.83 8.52 -40.82 -0.35 6.49 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.12 2.00 7.03 -52.49 -0.37 1.63 16 36 H 0.12 1.58 6.27 -52.49 -0.33 1.25 16 37 H 0.09 0.76 7.65 -51.93 -0.40 0.36 16 38 H 0.10 0.97 7.65 -51.93 -0.40 0.57 16 39 H 0.40 1.37 8.83 -40.82 -0.36 1.00 16 40 H 0.41 2.17 8.93 -40.82 -0.36 1.81 16 41 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 42 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -35.27 360.31 -7.97 -43.24 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -5.35 Total: 10.50 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -3.08 Total: -5.15 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.62 Total: -43.68 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.56 Total: -25.60 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.27 -7.97 -43.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491880296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.306 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds