Wall clock time and date at job start Fri Apr 10 2020 18:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46998 * 2 1 4 4 C 1.50696 * 109.47284 * 239.99556 * 2 1 3 5 5 H 1.08003 * 119.99993 * 239.99792 * 4 2 1 6 6 C 1.37875 * 120.00407 * 59.99942 * 4 2 1 7 7 N 1.31520 * 119.99284 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00251 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47279 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46996 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47119 * 299.99643 * 8 6 4 12 12 N 1.46505 * 109.47218 * 119.99242 * 2 1 3 13 13 C 1.34782 * 120.00039 * 275.00154 * 12 2 1 14 14 O 1.21720 * 119.99949 * 359.97438 * 13 12 2 15 15 C 1.46259 * 119.99681 * 179.97438 * 13 12 2 16 16 C 1.34975 * 119.99330 * 173.21937 * 15 13 12 17 17 C 1.46998 * 120.00385 * 349.03329 * 16 15 13 18 18 C 1.39974 * 120.11257 * 316.08293 * 17 16 15 19 19 C 1.37665 * 119.88239 * 179.71542 * 18 17 16 20 20 C 1.39022 * 120.11520 * 0.58495 * 19 18 17 21 21 O 1.35735 * 119.88814 * 179.69533 * 20 19 18 22 22 C 1.42896 * 117.00034 * 359.97438 * 21 20 19 23 23 C 1.50704 * 109.47427 * 180.02562 * 22 21 20 24 24 N 1.34775 * 120.00103 * 179.97438 * 23 22 21 25 25 O 1.21282 * 119.99766 * 359.97438 * 23 22 21 26 26 C 1.39024 * 120.22557 * 359.66720 * 20 19 18 27 27 C 1.37656 * 120.11750 * 0.04973 * 26 20 19 28 28 H 1.08996 * 109.46856 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46964 * 60.00587 * 1 2 3 30 30 H 1.09000 * 109.47012 * 300.00051 * 1 2 3 31 31 H 0.97002 * 119.99146 * 179.97438 * 7 6 4 32 32 H 0.97000 * 119.99975 * 95.00410 * 12 2 1 33 33 H 1.07994 * 120.00271 * 353.22289 * 15 13 12 34 34 H 1.07998 * 119.99639 * 169.03835 * 16 15 13 35 35 H 1.07998 * 120.05797 * 359.97438 * 18 17 16 36 36 H 1.07994 * 119.94315 * 180.27356 * 19 18 17 37 37 H 1.09004 * 109.46964 * 299.99730 * 22 21 20 38 38 H 1.08998 * 109.47580 * 59.99661 * 22 21 20 39 39 H 0.97000 * 119.99955 * 0.02562 * 24 23 22 40 40 H 0.96999 * 119.99999 * 179.97438 * 24 23 22 41 41 H 1.08004 * 119.94145 * 180.02562 * 26 20 19 42 42 H 1.07997 * 120.06472 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9428 0.8294 -2.6034 8 14 2.3215 -1.1207 -4.0077 9 1 1.8260 -2.5206 -4.0074 10 1 1.8271 -0.4203 -5.2204 11 1 3.8065 -1.1212 -4.0079 12 7 2.0184 -0.6905 1.1963 13 6 2.1471 -0.0179 2.3572 14 8 1.8580 1.1632 2.4116 15 6 2.6341 -0.7075 3.5516 16 6 2.8933 -0.0076 4.6762 17 6 2.9207 1.4616 4.6378 18 6 3.5706 2.1247 3.5903 19 6 3.5883 3.5008 3.5559 20 6 2.9727 4.2318 4.5655 21 8 2.9983 5.5885 4.5302 22 6 3.6751 6.1961 3.4281 23 6 3.6008 7.6957 3.5579 24 7 4.1748 8.4820 2.6258 25 8 3.0246 8.1949 4.5010 26 6 2.3304 3.5781 5.6109 27 6 2.3019 2.2024 5.6516 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.7088 1.1609 -3.4845 32 1 2.2491 -1.6316 1.1528 33 1 2.7864 -1.7765 3.5337 34 1 3.0806 -0.5270 5.6044 35 1 4.0537 1.5578 2.8083 36 1 4.0856 4.0134 2.7458 37 1 4.7193 5.8833 3.4259 38 1 3.2015 5.8878 2.4961 39 1 4.6354 8.0827 1.8713 40 1 4.1266 9.4472 2.7091 41 1 1.8533 4.1505 6.3926 42 1 1.8024 1.6954 6.4639 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491880296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:54 Heat of formation + Delta-G solvation = -86.575404 kcal Electronic energy + Delta-G solvation = -25796.358951 eV Core-core repulsion = 21934.426035 eV Total energy + Delta-G solvation = -3861.932917 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45258 -40.73254 -40.00847 -38.30962 -36.63227 -34.84451 -34.27498 -34.24301 -31.99687 -31.19731 -30.17818 -28.76739 -27.32852 -25.04551 -23.85333 -23.14710 -21.77886 -21.63251 -20.50919 -19.45486 -18.80322 -18.56020 -17.69359 -17.46757 -17.40338 -17.10985 -16.64861 -16.25711 -15.80298 -15.47264 -15.33586 -15.09799 -15.01672 -14.69028 -14.36890 -14.26394 -14.02265 -13.70313 -13.62179 -13.33490 -12.94421 -12.84424 -12.72483 -12.50055 -12.26145 -12.16459 -12.09436 -11.84626 -11.17826 -11.09615 -10.81512 -10.65181 -10.52051 -10.46894 -9.90299 -9.47605 -8.64400 -8.16382 -6.33922 -0.09191 0.55355 1.02748 1.39961 1.45322 1.46912 1.54804 1.68640 2.38096 2.59197 2.81965 2.83778 2.94314 3.13990 3.72646 3.91098 3.94404 3.98436 4.02900 4.07130 4.20383 4.42789 4.53038 4.60782 4.76236 4.81941 4.93432 5.10466 5.11996 5.15829 5.26582 5.40617 5.47379 5.55437 5.64644 5.72407 5.73567 5.79481 5.85574 5.98434 6.12501 6.24774 6.42978 6.74763 7.10067 7.17820 7.34695 7.68687 8.89335 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.003317 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.741955 B = 8440.024864 C =10383.788777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.276 3.724 3 H -0.001 1.001 4 C -0.548 4.548 5 H 0.072 0.928 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.287 1.287 11 H -0.269 1.269 12 N -0.704 5.704 13 C 0.515 3.485 14 O -0.581 6.581 15 C -0.217 4.217 16 C -0.015 4.015 17 C -0.119 4.119 18 C -0.006 4.006 19 C -0.229 4.229 20 C 0.122 3.878 21 O -0.315 6.315 22 C 0.031 3.969 23 C 0.522 3.478 24 N -0.824 5.824 25 O -0.579 6.579 26 C -0.178 4.178 27 C -0.060 4.060 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.009 0.991 31 H 0.265 0.735 32 H 0.403 0.597 33 H 0.165 0.835 34 H 0.179 0.821 35 H 0.103 0.897 36 H 0.136 0.864 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.422 0.578 40 H 0.416 0.584 41 H 0.137 0.863 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.679 3.290 12.404 16.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.172 3.828 3 H 0.017 0.983 4 C -0.586 4.586 5 H 0.090 0.910 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.795 3.205 9 H -0.191 1.191 10 H -0.212 1.212 11 H -0.194 1.194 12 N -0.352 5.352 13 C 0.305 3.695 14 O -0.464 6.464 15 C -0.237 4.237 16 C -0.034 4.034 17 C -0.119 4.119 18 C -0.025 4.025 19 C -0.248 4.248 20 C 0.077 3.923 21 O -0.228 6.228 22 C -0.047 4.047 23 C 0.306 3.694 24 N -0.391 5.391 25 O -0.458 6.458 26 C -0.197 4.197 27 C -0.078 4.078 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.238 0.762 33 H 0.183 0.817 34 H 0.196 0.804 35 H 0.121 0.879 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.123 0.877 39 H 0.254 0.746 40 H 0.249 0.751 41 H 0.155 0.845 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.904 4.506 13.030 16.412 hybrid contribution 0.276 -0.247 -1.876 1.912 sum 9.180 4.259 11.154 15.061 Atomic orbital electron populations 1.21893 0.98824 0.99148 0.99291 1.18228 0.90649 0.91900 0.82021 0.98265 1.21544 1.32551 1.13557 0.90944 0.90982 1.25781 0.94862 0.95567 1.02260 1.70058 1.36960 1.23982 1.24558 0.85426 0.78722 0.78677 0.77680 1.19051 1.21239 1.19432 1.46310 1.64893 1.14203 1.09808 1.19248 0.78622 0.86904 0.84707 1.90822 1.53030 1.17174 1.85391 1.23204 1.06085 1.01972 0.92481 1.22657 0.91154 0.91224 0.98350 1.19118 1.02189 0.94346 0.96239 1.20910 0.94217 0.93531 0.93798 1.21167 1.07662 0.95251 1.00690 1.19280 0.96258 0.81260 0.95514 1.86020 1.73076 1.17643 1.46088 1.22703 1.00686 0.90480 0.90801 1.20264 0.77813 0.89092 0.82237 1.43450 1.57765 1.10857 1.27022 1.90769 1.44391 1.76663 1.33966 1.20460 1.04986 0.94748 0.99483 1.21267 0.96503 0.92250 0.97768 0.94416 0.91697 0.97238 0.92632 0.76233 0.81740 0.80434 0.87925 0.84618 0.85927 0.87659 0.74603 0.75087 0.84465 0.82356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16 2 C 0.28 14.10 2.56 44.24 0.11 14.22 16 3 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 4 C -0.55 -28.58 8.73 25.60 0.22 -28.36 16 5 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 6 C 0.02 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -52.06 11.32 21.45 0.24 -51.82 16 8 Si 0.97 41.23 29.54 68.60 2.03 43.26 16 9 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 10 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 12 N -0.70 -28.54 5.07 -450.46 -2.28 -30.83 16 13 C 0.52 19.68 6.75 86.33 0.58 20.26 16 14 O -0.58 -26.65 11.82 -4.41 -0.05 -26.70 16 15 C -0.22 -5.61 9.91 23.61 0.23 -5.38 16 16 C -0.01 -0.33 9.80 23.82 0.23 -0.09 16 17 C -0.12 -3.40 4.53 -20.14 -0.09 -3.49 16 18 C -0.01 -0.20 6.59 22.56 0.15 -0.05 16 19 C -0.23 -7.10 9.01 22.32 0.20 -6.90 16 20 C 0.12 3.79 6.70 22.65 0.15 3.94 16 21 O -0.32 -9.67 9.66 -71.55 -0.69 -10.36 16 22 C 0.03 0.68 5.21 71.24 0.37 1.06 16 23 C 0.52 11.78 8.18 87.66 0.72 12.50 16 24 N -0.82 -9.70 8.87 -173.53 -1.54 -11.24 16 25 O -0.58 -19.33 17.34 16.00 0.28 -19.05 16 26 C -0.18 -5.13 9.97 22.32 0.22 -4.91 16 27 C -0.06 -1.56 9.79 22.55 0.22 -1.34 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 3.63 6.07 -2.39 -0.01 3.62 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.26 14.26 8.31 -92.71 -0.77 13.48 16 32 H 0.40 13.69 8.52 -92.71 -0.79 12.90 16 33 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.10 3.59 7.03 -2.91 -0.02 3.57 16 36 H 0.14 3.59 6.27 -2.91 -0.02 3.57 16 37 H 0.12 1.88 7.65 -2.38 -0.02 1.86 16 38 H 0.11 2.10 7.65 -2.39 -0.02 2.08 16 39 H 0.42 2.12 8.83 -92.71 -0.82 1.30 16 40 H 0.42 3.97 8.93 -92.71 -0.83 3.14 16 41 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 42 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -80.37 360.31 1.08 -79.29 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -1.35 Total: 30.83 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 4.44 Total: -3.39 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -3.58 Total: -93.88 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -0.47 Total: -56.11 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -80.37 1.08 -79.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491880296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.283 kcal (2) G-P(sol) polarization free energy of solvation -80.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds