Wall clock time and date at job start Fri Apr 10 2020 18:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21717 * 120.00304 * 359.97438 * 13 12 2 15 15 C 1.46266 * 119.99436 * 179.97438 * 13 12 2 16 16 C 1.34980 * 119.99234 * 179.97438 * 15 13 12 17 17 C 1.47006 * 119.99332 * 180.02562 * 16 15 13 18 18 C 1.39973 * 120.11269 * 359.71955 * 17 16 15 19 19 C 1.37666 * 119.88105 * 179.76810 * 18 17 16 20 20 C 1.39021 * 120.11545 * 0.53579 * 19 18 17 21 21 O 1.35734 * 119.88960 * 179.72222 * 20 19 18 22 22 C 1.42901 * 116.99874 * 359.97131 * 21 20 19 23 23 C 1.50705 * 109.47292 * 179.97438 * 22 21 20 24 24 N 1.34773 * 119.99845 * 180.02562 * 23 22 21 25 25 O 1.21278 * 119.99509 * 0.02562 * 23 22 21 26 26 C 1.39020 * 120.22682 * 359.69542 * 20 19 18 27 27 C 1.37661 * 120.11492 * 0.04840 * 26 20 19 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 32 32 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 33 33 H 1.07992 * 120.00377 * 0.02562 * 15 13 12 34 34 H 1.07996 * 120.00501 * 359.97438 * 16 15 13 35 35 H 1.07994 * 120.06052 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.94595 * 180.23482 * 19 18 17 37 37 H 1.09001 * 109.47723 * 300.00784 * 22 21 20 38 38 H 1.09010 * 109.46849 * 60.00652 * 22 21 20 39 39 H 0.97001 * 120.00480 * 0.02562 * 24 23 22 40 40 H 0.96998 * 119.99855 * 180.02562 * 24 23 22 41 41 H 1.07997 * 119.94410 * 180.02562 * 26 20 19 42 42 H 1.08005 * 120.06114 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8580 1.1629 2.4117 15 6 2.6341 -0.7079 3.5515 16 6 2.7635 -0.0343 4.7140 17 6 3.2535 -0.7273 5.9143 18 6 3.5811 -2.0869 5.8556 19 6 4.0441 -2.7300 6.9813 20 6 4.1760 -2.0342 8.1776 21 8 4.6276 -2.6742 9.2861 22 6 4.9471 -4.0604 9.1500 23 6 5.4287 -4.5973 10.4733 24 7 5.7894 -5.8911 10.5845 25 8 5.4917 -3.8650 11.4379 26 6 3.8475 -0.6850 8.2424 27 6 3.3885 -0.0313 7.1211 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7089 1.1613 -3.4844 32 1 2.2491 -1.6318 1.1527 33 1 2.8910 -1.7557 3.5030 34 1 2.5077 1.0138 4.7622 35 1 3.4747 -2.6295 4.9279 36 1 4.3007 -3.7781 6.9363 37 1 4.0588 -4.6090 8.8365 38 1 5.7312 -4.1809 8.4024 39 1 5.7393 -6.4767 9.8128 40 1 6.0991 -6.2367 11.4363 41 1 3.9521 -0.1488 9.1740 42 1 3.1332 1.0169 7.1725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491880297.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:57 Heat of formation + Delta-G solvation = -74.156376 kcal Electronic energy + Delta-G solvation = -24365.985131 eV Core-core repulsion = 20504.590744 eV Total energy + Delta-G solvation = -3861.394387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.80359 -39.64952 -38.85386 -37.74299 -34.86888 -34.33655 -33.45553 -32.34406 -31.40811 -29.98740 -29.00727 -27.92580 -25.25963 -24.08146 -23.26234 -21.80006 -21.11199 -19.96249 -19.12499 -18.85687 -18.26007 -17.25732 -16.93843 -16.86681 -16.23304 -15.79715 -15.28376 -15.13045 -14.77449 -14.65915 -14.42804 -14.17897 -13.96459 -13.61884 -13.22364 -13.05760 -12.87053 -12.46315 -12.29796 -11.82610 -11.72994 -11.60024 -11.09998 -11.04937 -10.97135 -10.73848 -10.52060 -10.35056 -10.30839 -10.23932 -9.85488 -9.32093 -9.10780 -9.02746 -8.55357 -8.05335 -7.78689 -6.12292 -4.21481 0.57401 1.09354 1.96426 2.09067 2.17270 3.23219 3.29936 3.30887 3.33490 3.56287 4.06871 4.11827 4.12114 4.34851 4.37881 4.43642 4.49991 4.55063 4.87922 5.00638 5.10429 5.20079 5.24257 5.32218 5.69891 5.75126 5.88738 6.01976 6.09404 6.11066 6.39064 6.51866 6.61273 6.64709 6.84725 6.98419 6.98602 7.16417 7.47515 7.58223 7.60374 7.70928 7.92910 8.15615 8.68651 8.79032 9.14990 9.46222 10.93793 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024226 B = 0.001854 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.519940 B =15101.384898 C =16023.370193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.702 5.702 13 C 0.529 3.471 14 O -0.560 6.560 15 C -0.192 4.192 16 C -0.044 4.044 17 C -0.095 4.095 18 C -0.065 4.065 19 C -0.210 4.210 20 C 0.128 3.872 21 O -0.290 6.290 22 C 0.038 3.962 23 C 0.520 3.480 24 N -0.851 5.851 25 O -0.518 6.518 26 C -0.147 4.147 27 C -0.059 4.059 28 H 0.090 0.910 29 H 0.015 0.985 30 H 0.026 0.974 31 H 0.264 0.736 32 H 0.389 0.611 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.404 0.596 40 H 0.409 0.591 41 H 0.135 0.865 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.230 -14.454 22.826 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.349 5.349 13 C 0.316 3.684 14 O -0.441 6.441 15 C -0.212 4.212 16 C -0.064 4.064 17 C -0.096 4.096 18 C -0.083 4.083 19 C -0.229 4.229 20 C 0.083 3.917 21 O -0.202 6.202 22 C -0.041 4.041 23 C 0.303 3.697 24 N -0.418 5.418 25 O -0.392 6.392 26 C -0.165 4.165 27 C -0.077 4.077 28 H 0.109 0.891 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.221 0.779 33 H 0.140 0.860 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.232 0.768 40 H 0.241 0.759 41 H 0.153 0.847 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.928 -12.776 23.373 27.792 hybrid contribution 0.523 -1.733 -1.190 2.166 sum 8.450 -14.509 22.183 27.821 Atomic orbital electron populations 1.22071 0.98401 0.99099 1.00934 1.18771 0.91087 0.94078 0.80051 0.93278 1.21256 1.32353 1.13188 0.90329 0.92027 1.24899 0.94844 0.94972 0.99083 1.69917 1.35933 1.22448 1.23759 0.86388 0.78585 0.79499 0.82576 1.19765 1.20893 1.20879 1.46456 1.64382 1.13464 1.10562 1.18244 0.79175 0.87041 0.83969 1.90767 1.51999 1.15884 1.85486 1.23205 1.03703 1.00353 0.93984 1.22210 0.93866 0.99922 0.90437 1.19054 1.02930 0.93648 0.93924 1.21248 0.95344 0.93730 0.97989 1.21126 1.08257 1.00586 0.92945 1.19190 0.94978 0.92356 0.85220 1.86104 1.79774 1.21775 1.32585 1.22455 1.02270 0.82921 0.96419 1.20075 0.77347 0.82469 0.89809 1.43656 1.70417 1.10785 1.16899 1.90822 1.51836 1.57117 1.39412 1.20359 1.04474 0.91637 1.00074 1.21228 0.95705 0.99957 0.90815 0.89145 0.96602 0.95491 0.92630 0.77879 0.86014 0.84685 0.84912 0.85325 0.88614 0.88618 0.76762 0.75910 0.84729 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.73 2.56 -69.08 -0.18 6.56 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.70 -14.74 5.06 -56.37 -0.29 -15.03 16 13 C 0.53 10.73 7.70 -13.04 -0.10 10.63 16 14 O -0.56 -13.63 15.89 5.17 0.08 -13.55 16 15 C -0.19 -2.84 9.41 -37.52 -0.35 -3.19 16 16 C -0.04 -0.60 9.45 -37.19 -0.35 -0.95 16 17 C -0.10 -1.08 5.87 -105.04 -0.62 -1.69 16 18 C -0.07 -0.64 9.40 -39.14 -0.37 -1.00 16 19 C -0.21 -1.78 9.01 -39.50 -0.36 -2.14 16 20 C 0.13 1.26 6.70 -39.00 -0.26 1.00 16 21 O -0.29 -2.92 9.66 -38.82 -0.37 -3.29 16 22 C 0.04 0.22 5.21 36.01 0.19 0.41 16 23 C 0.52 3.70 8.18 -10.98 -0.09 3.61 16 24 N -0.85 -2.11 8.87 31.22 0.28 -1.83 16 25 O -0.52 -6.51 17.34 -14.35 -0.25 -6.76 16 26 C -0.15 -1.47 9.97 -39.50 -0.39 -1.86 16 27 C -0.06 -0.60 9.79 -39.14 -0.38 -0.98 16 28 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.39 6.94 8.52 -40.82 -0.35 6.59 16 33 H 0.12 1.41 6.07 -52.49 -0.32 1.09 16 34 H 0.14 1.94 7.52 -52.49 -0.39 1.55 16 35 H 0.13 1.10 6.16 -52.49 -0.32 0.78 16 36 H 0.13 0.68 6.27 -52.49 -0.33 0.35 16 37 H 0.10 0.31 7.65 -51.93 -0.40 -0.09 16 38 H 0.10 0.31 7.65 -51.92 -0.40 -0.08 16 39 H 0.40 -0.36 8.83 -40.82 -0.36 -0.72 16 40 H 0.41 0.76 8.93 -40.82 -0.36 0.40 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -36.70 365.23 -7.93 -44.63 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.17 Total: 4.83 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -3.31 Total: -5.74 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.62 Total: -41.17 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.54 Total: -23.60 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.70 -7.93 -44.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491880297.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.526 kcal (2) G-P(sol) polarization free energy of solvation -36.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds