Wall clock time and date at job start Fri Apr 10 2020 18:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 109.47196 * 2 1 4 4 C 1.35694 * 116.99895 * 180.02562 * 3 2 1 5 5 C 1.38608 * 120.15622 * 0.02562 * 4 3 2 6 6 C 1.38128 * 120.10539 * 180.02562 * 5 4 3 7 7 C 1.38568 * 120.43532 * 0.02562 * 6 5 4 8 8 C 1.37754 * 120.32165 * 359.69678 * 7 6 5 9 9 C 1.39927 * 119.87811 * 0.57723 * 8 7 6 10 10 C 1.46935 * 120.21250 * 179.72844 * 9 8 7 11 11 C 1.35007 * 119.99966 * 315.09759 * 10 9 8 12 12 C 1.46244 * 119.99774 * 349.66638 * 11 10 9 13 13 O 1.21723 * 119.99986 * 353.27119 * 12 11 10 14 14 N 1.34777 * 120.00093 * 173.26459 * 12 11 10 15 15 C 1.46491 * 120.00321 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47346 * 179.97438 * 15 14 12 17 17 O 1.21294 * 119.99852 * 0.02562 * 16 15 14 18 18 N 1.34781 * 120.00333 * 179.97438 * 16 15 14 19 19 C 1.37091 * 120.00078 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00464 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00053 * 180.02562 * 19 18 16 22 22 N 1.31419 * 119.99672 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00405 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46813 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47170 * 119.99666 * 23 21 19 26 26 H 1.48500 * 109.47001 * 240.00121 * 23 21 19 27 27 H 1.08996 * 109.46753 * 300.00483 * 1 2 3 28 28 H 1.08998 * 109.46895 * 60.00144 * 1 2 3 29 29 H 1.08997 * 109.47059 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46753 * 239.99517 * 2 1 3 31 31 H 1.08998 * 109.46895 * 119.99856 * 2 1 3 32 32 H 1.08001 * 119.95197 * 359.97438 * 5 4 3 33 33 H 1.07998 * 119.78098 * 179.97438 * 6 5 4 34 34 H 1.08009 * 119.83686 * 179.97438 * 7 6 5 35 35 H 1.07998 * 120.06183 * 180.30819 * 8 7 6 36 36 H 1.07997 * 120.00692 * 135.10279 * 10 9 8 37 37 H 1.07995 * 119.99973 * 169.93963 * 11 10 9 38 38 H 0.97003 * 119.99388 * 0.02562 * 14 12 11 39 39 H 1.09001 * 109.47122 * 300.00190 * 15 14 12 40 40 H 1.09004 * 109.47232 * 60.00111 * 15 14 12 41 41 H 0.97003 * 119.99386 * 0.02562 * 18 16 15 42 42 H 0.96998 * 119.99721 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3517 1.5250 -0.0005 5 6 4.1990 0.4281 -0.0016 6 6 5.5682 0.6102 -0.0016 7 6 6.1064 1.8871 0.0000 8 6 5.2809 2.9898 -0.0047 9 6 3.8919 2.8207 0.0011 10 6 3.0045 3.9918 0.0022 11 6 3.2601 5.0317 0.8243 12 6 4.2765 4.9058 1.8683 13 8 4.8047 3.8291 2.0767 14 7 4.6284 5.9818 2.5996 15 6 5.6469 5.8558 3.6449 16 6 5.8546 7.1932 4.3077 17 8 5.2144 8.1567 3.9430 18 7 6.7510 7.3184 5.3064 19 6 6.9396 8.5349 5.9097 20 1 6.3696 9.3929 5.5850 21 6 7.8641 8.6642 6.9389 22 7 8.5574 7.6201 7.3343 23 14 8.1206 10.3216 7.7615 24 1 7.2243 11.3278 7.1375 25 1 7.8080 10.2095 9.2088 26 1 9.5337 10.7451 7.5915 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.7880 -0.5707 -0.0016 33 1 6.2235 -0.2482 -0.0020 34 1 7.1785 2.0183 0.0004 35 1 5.7049 3.9831 -0.0085 36 1 2.1476 4.0208 -0.6546 37 1 2.7109 5.9551 0.7139 38 1 4.2072 6.8397 2.4336 39 1 5.3174 5.1291 4.3875 40 1 6.5844 5.5216 3.2004 41 1 7.2627 6.5477 5.5982 42 1 9.2025 7.7102 8.0530 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492806204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:09 Heat of formation + Delta-G solvation = -83.887054 kcal Electronic energy + Delta-G solvation = -25403.683759 eV Core-core repulsion = 21541.867418 eV Total energy + Delta-G solvation = -3861.816341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41649 -40.73403 -39.89384 -38.29955 -36.26310 -35.34268 -34.74287 -33.38634 -32.69365 -31.13924 -30.28861 -29.09261 -26.61278 -25.18146 -24.28449 -22.73344 -22.31158 -21.37727 -20.55024 -19.99048 -19.29076 -18.29675 -17.36841 -17.21628 -16.98956 -16.80700 -16.60179 -16.47484 -16.05284 -15.61952 -15.50516 -15.32548 -14.90588 -14.46297 -14.37278 -14.02357 -13.95882 -13.63094 -13.55748 -13.51647 -13.36304 -12.92910 -12.83114 -12.58410 -12.45710 -12.41600 -12.11760 -11.75308 -11.61379 -11.59014 -11.07308 -10.71561 -10.57040 -10.14566 -10.05312 -9.29872 -8.87841 -8.52204 -6.02449 -0.20005 0.60302 0.92031 1.34352 1.42155 1.56426 1.88988 2.12288 2.26163 2.34003 2.37337 2.92994 3.13635 3.14920 3.75750 3.90326 3.96278 4.07864 4.09891 4.22656 4.24639 4.33181 4.40087 4.43225 4.43554 4.50456 4.56765 4.68296 4.93607 4.96413 5.03573 5.11361 5.23763 5.25216 5.33377 5.38504 5.46454 5.57570 5.70151 5.89588 5.91204 6.46052 6.50396 6.62014 7.02476 7.26145 7.43568 7.93282 8.65001 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.002289 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.197890 B =12230.465000 C =12651.684666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.327 6.327 4 C 0.135 3.865 5 C -0.227 4.227 6 C -0.071 4.071 7 C -0.183 4.183 8 C -0.014 4.014 9 C -0.127 4.127 10 C 0.001 3.999 11 C -0.223 4.223 12 C 0.535 3.465 13 O -0.563 6.563 14 N -0.705 5.705 15 C 0.125 3.875 16 C 0.433 3.567 17 O -0.624 6.624 18 N -0.560 5.560 19 C -0.336 4.336 20 H 0.086 0.914 21 C -0.012 4.012 22 N -0.917 5.917 23 Si 0.998 3.002 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.271 1.271 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.412 0.588 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.398 0.602 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.215 -16.599 -16.662 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.241 6.241 4 C 0.090 3.910 5 C -0.246 4.246 6 C -0.089 4.089 7 C -0.201 4.201 8 C -0.032 4.032 9 C -0.127 4.127 10 C -0.019 4.019 11 C -0.243 4.243 12 C 0.325 3.675 13 O -0.445 6.445 14 N -0.358 5.358 15 C -0.003 4.003 16 C 0.220 3.780 17 O -0.512 6.512 18 N -0.196 5.196 19 C -0.465 4.465 20 H 0.104 0.896 21 C -0.213 4.213 22 N -0.557 5.557 23 Si 0.821 3.179 24 H -0.194 1.194 25 H -0.196 1.196 26 H -0.196 1.196 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.178 0.822 37 H 0.178 0.822 38 H 0.250 0.750 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.233 0.767 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.264 -16.584 -16.562 26.004 hybrid contribution 0.607 0.686 0.921 1.300 sum -10.657 -15.898 -15.640 24.717 Atomic orbital electron populations 1.21800 0.91442 1.04149 1.03160 1.23062 0.96882 0.80799 1.02172 1.85973 1.18573 1.31298 1.88298 1.19160 0.82739 0.93388 0.95737 1.21345 0.94429 0.98351 1.10448 1.21284 0.94697 0.97577 0.95381 1.21116 1.00374 0.92785 1.05834 1.20960 0.91555 0.98734 0.91961 1.18427 0.93535 0.91208 1.09570 1.22432 0.95285 0.89611 0.94552 1.22999 1.01728 1.01884 0.97731 1.18929 0.82760 0.83102 0.82684 1.90858 1.56159 1.27293 1.70145 1.45738 1.40962 1.13394 1.35701 1.20703 0.93796 0.94345 0.91486 1.20461 0.83371 0.90754 0.83438 1.90471 1.51744 1.41675 1.67323 1.41864 1.35259 1.11741 1.30722 1.19773 1.22107 0.88765 1.15901 0.89596 1.26155 0.95145 1.02851 0.97115 1.69691 1.25166 1.31343 1.29475 0.84798 0.78335 0.76893 0.77871 1.19420 1.19611 1.19579 0.92363 0.91429 0.88172 0.90604 0.91845 0.83451 0.83534 0.85185 0.87193 0.82200 0.82177 0.74967 0.89284 0.88892 0.76745 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.05 0.65 5.46 71.98 0.39 1.04 16 3 O -0.33 -7.21 9.59 -90.13 -0.86 -8.08 16 4 C 0.14 3.36 6.70 22.88 0.15 3.52 16 5 C -0.23 -4.86 9.03 22.33 0.20 -4.66 16 6 C -0.07 -1.53 10.03 22.32 0.22 -1.31 16 7 C -0.18 -4.57 10.02 22.23 0.22 -4.34 16 8 C -0.01 -0.38 6.60 22.56 0.15 -0.23 16 9 C -0.13 -3.41 4.52 -20.07 -0.09 -3.50 16 10 C 0.00 0.02 9.36 23.81 0.22 0.24 16 11 C -0.22 -5.42 9.92 23.61 0.23 -5.19 16 12 C 0.53 17.02 6.83 86.32 0.59 17.61 16 13 O -0.56 -20.63 12.15 -4.42 -0.05 -20.69 16 14 N -0.70 -23.73 5.52 -471.27 -2.60 -26.33 16 15 C 0.12 4.67 6.15 85.63 0.53 5.19 16 16 C 0.43 20.32 7.85 87.65 0.69 21.01 16 17 O -0.62 -32.73 15.24 -3.07 -0.05 -32.78 16 18 N -0.56 -28.57 5.29 -306.99 -1.62 -30.19 16 19 C -0.34 -18.72 9.68 84.04 0.81 -17.90 16 20 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -49.09 13.05 21.67 0.28 -48.81 16 23 Si 1.00 42.07 29.55 68.60 2.03 44.10 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.84 7.66 -2.39 -0.02 0.82 16 31 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 32 H 0.15 2.28 6.30 -2.91 -0.02 2.26 16 33 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.11 3.16 7.10 -2.91 -0.02 3.14 16 36 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 38 H 0.41 13.65 7.42 -92.71 -0.69 12.97 16 39 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 41 H 0.40 19.54 7.90 -92.71 -0.73 18.81 16 42 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -69.63 362.10 2.30 -67.33 By element: Atomic # 1 Polarization: 45.33 SS G_CDS: -0.36 Total: 44.97 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 5.54 Total: 10.48 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.94 Total: -105.33 kcal Atomic # 8 Polarization: -60.58 SS G_CDS: -0.97 Total: -61.54 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -69.63 2.30 -67.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492806204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.559 kcal (2) G-P(sol) polarization free energy of solvation -69.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds