Wall clock time and date at job start Fri Apr 10 2020 18:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47256 * 2 1 4 4 C 1.35729 * 117.00223 * 179.97438 * 3 2 1 5 5 C 1.39016 * 119.88855 * 179.97438 * 4 3 2 6 6 C 1.37667 * 120.11497 * 180.02562 * 5 4 3 7 7 C 1.39968 * 119.88512 * 0.02562 * 6 5 4 8 8 C 1.47000 * 120.11364 * 179.97438 * 7 6 5 9 9 C 1.34974 * 120.00189 * 136.35762 * 8 7 6 10 10 C 1.46261 * 119.99768 * 349.03616 * 9 8 7 11 11 O 1.21716 * 120.00085 * 353.22245 * 10 9 8 12 12 N 1.34783 * 120.00055 * 172.93914 * 10 9 8 13 13 C 1.46504 * 119.99888 * 180.27874 * 12 10 9 14 14 C 1.50693 * 109.46774 * 179.97438 * 13 12 10 15 15 O 1.21296 * 120.00072 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99939 * 180.02562 * 14 13 12 17 17 C 1.37094 * 120.00046 * 180.02562 * 16 14 13 18 18 H 1.08006 * 120.00386 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00145 * 180.02562 * 17 16 14 20 20 N 1.31408 * 119.99724 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00357 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47145 * 89.99480 * 21 19 17 23 23 H 1.48500 * 109.47221 * 210.00050 * 21 19 17 24 24 H 1.48508 * 109.46801 * 330.00014 * 21 19 17 25 25 C 1.39970 * 119.77637 * 0.25723 * 7 6 5 26 26 C 1.37664 * 119.87987 * 359.46786 * 25 7 6 27 27 H 1.08999 * 109.47552 * 300.00320 * 1 2 3 28 28 H 1.09005 * 109.47083 * 59.99866 * 1 2 3 29 29 H 1.09002 * 109.47318 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47552 * 239.99680 * 2 1 3 31 31 H 1.08998 * 109.47162 * 119.99781 * 2 1 3 32 32 H 1.07996 * 119.94453 * 359.97438 * 5 4 3 33 33 H 1.08003 * 120.05479 * 180.02562 * 6 5 4 34 34 H 1.08005 * 120.00388 * 316.36124 * 8 7 6 35 35 H 1.07995 * 120.00540 * 169.03718 * 9 8 7 36 36 H 0.96996 * 119.99603 * 0.28019 * 12 10 9 37 37 H 1.08991 * 109.46950 * 300.00024 * 13 12 10 38 38 H 1.09004 * 109.46669 * 60.00079 * 13 12 10 39 39 H 0.97001 * 119.99954 * 359.97438 * 16 14 13 40 40 H 0.97001 * 120.00120 * 179.97438 * 20 19 17 41 41 H 1.07995 * 120.06095 * 179.74261 * 25 7 6 42 42 H 1.08004 * 119.94429 * 180.28193 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3519 1.5252 0.0005 5 6 3.8808 2.8108 0.0000 6 6 5.2448 2.9966 0.0000 7 6 6.0996 1.8883 0.0000 8 6 7.5570 2.0808 -0.0005 9 6 8.3372 1.3309 0.8061 10 6 7.7296 0.5023 1.8471 11 8 6.5353 0.5816 2.0682 12 7 8.4911 -0.3531 2.5576 13 6 7.8814 -1.1874 3.5962 14 6 8.9406 -2.0480 4.2352 15 8 10.0917 -1.9715 3.8603 16 7 8.6089 -2.9025 5.2232 17 6 9.5726 -3.6851 5.8049 18 1 10.5976 -3.6171 5.4712 19 6 9.2306 -4.5665 6.8232 20 7 7.9835 -4.6497 7.2289 21 14 10.5436 -5.6334 7.6154 22 1 11.1332 -4.9145 8.7733 23 1 9.9340 -6.9051 8.0803 24 1 11.6074 -5.9284 6.6220 25 6 5.5622 0.5959 -0.0055 26 6 4.1967 0.4210 0.0003 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.2204 3.6653 -0.0012 33 1 5.6546 3.9959 0.0001 34 1 8.0035 2.8225 -0.6463 35 1 9.4100 1.3425 0.6830 36 1 9.4428 -0.4163 2.3814 37 1 7.4254 -0.5496 4.3532 38 1 7.1177 -1.8237 3.1490 39 1 7.6885 -2.9634 5.5232 40 1 7.7446 -5.2652 7.9394 41 1 6.2174 -0.2625 -0.0097 42 1 3.7808 -0.5758 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492918534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:16 Heat of formation + Delta-G solvation = -63.620284 kcal Electronic energy + Delta-G solvation = -25227.576293 eV Core-core repulsion = 21366.638785 eV Total energy + Delta-G solvation = -3860.937508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.32422 -39.56420 -38.29901 -37.40397 -34.48701 -33.74481 -33.47651 -31.87298 -31.39736 -30.94491 -29.07195 -27.51408 -24.79228 -24.15842 -23.43014 -21.82276 -21.28175 -19.75957 -19.19499 -18.38807 -18.06298 -17.33511 -16.24960 -16.06604 -15.79526 -15.48180 -15.19424 -14.93800 -14.51951 -14.28409 -14.07610 -13.80565 -13.74411 -13.56440 -13.39170 -13.13392 -13.02414 -12.71057 -12.20939 -12.12871 -11.90985 -11.86291 -11.65328 -11.56625 -11.14055 -10.99567 -10.79641 -10.47501 -10.33471 -9.69449 -9.65499 -9.63509 -8.98138 -8.65225 -8.58496 -8.12019 -7.71504 -6.53280 -3.95341 0.76714 1.48077 1.91409 3.08557 3.10226 3.20577 3.25415 3.46329 3.50338 3.73025 3.86858 4.10469 4.68317 4.69757 4.73587 4.84951 4.86861 4.90269 5.02016 5.04417 5.15296 5.23563 5.32360 5.34943 5.49245 5.53605 5.71598 5.77152 5.85503 5.95045 5.96637 6.03901 6.05944 6.15088 6.34663 6.45310 6.64893 6.69930 6.76596 7.37738 7.44244 7.86176 7.90305 8.42690 8.50893 9.02802 9.37403 9.85293 10.63622 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014867 B = 0.002525 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.945337 B =11086.267934 C =12724.216787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.319 6.319 4 C 0.140 3.860 5 C -0.169 4.169 6 C -0.060 4.060 7 C -0.110 4.110 8 C -0.022 4.022 9 C -0.210 4.210 10 C 0.534 3.466 11 O -0.538 6.538 12 N -0.702 5.702 13 C 0.110 3.890 14 C 0.428 3.572 15 O -0.598 6.598 16 N -0.549 5.549 17 C -0.305 4.305 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.895 5.895 21 Si 0.933 3.067 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.269 1.269 25 C 0.008 3.992 26 C -0.218 4.218 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.411 0.589 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.396 0.604 40 H 0.274 0.726 41 H 0.116 0.884 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 11.770 -15.818 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.233 6.233 4 C 0.094 3.906 5 C -0.188 4.188 6 C -0.079 4.079 7 C -0.110 4.110 8 C -0.042 4.042 9 C -0.231 4.231 10 C 0.322 3.678 11 O -0.418 6.418 12 N -0.355 5.355 13 C -0.018 4.018 14 C 0.213 3.787 15 O -0.484 6.484 16 N -0.184 5.184 17 C -0.435 4.435 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.535 5.535 21 Si 0.760 3.240 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.193 1.193 25 C -0.010 4.010 26 C -0.237 4.237 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.248 0.752 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.229 0.771 40 H 0.084 0.916 41 H 0.134 0.866 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.206 11.829 -15.705 22.153 hybrid contribution 0.673 -0.973 0.814 1.436 sum -9.533 10.855 -14.892 20.748 Atomic orbital electron populations 1.21773 0.92846 1.02843 1.03375 1.22783 0.95713 0.82041 1.01645 1.85989 1.19478 1.29334 1.88482 1.19111 0.81895 0.94190 0.95380 1.20148 0.95036 0.94450 1.09167 1.20920 0.92015 0.97913 0.97011 1.18739 0.92586 0.93357 1.06338 1.22274 0.92083 0.94899 0.94953 1.22999 1.00574 1.01366 0.98163 1.18417 0.86673 0.80057 0.82605 1.90875 1.14466 1.67754 1.68662 1.45732 1.13324 1.39672 1.36741 1.20922 0.95605 0.94023 0.91241 1.19767 0.89330 0.85067 0.84510 1.90496 1.20552 1.71369 1.66011 1.41802 1.11663 1.34126 1.30810 1.19731 0.91990 1.16360 1.15380 0.87678 1.25329 0.97228 0.98095 0.97071 1.69614 1.16929 1.37708 1.29246 0.85813 0.80074 0.78819 0.79326 1.20242 1.20783 1.19306 1.20848 0.93928 0.95909 0.90317 1.21026 0.94262 0.97761 1.10639 0.91513 0.91676 0.90378 0.92081 0.91772 0.85610 0.85581 0.84860 0.84898 0.75158 0.89897 0.89978 0.77054 0.91580 0.86571 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.69 16 2 C 0.05 0.50 5.45 37.16 0.20 0.70 16 3 O -0.32 -3.92 10.12 -18.89 -0.19 -4.11 16 4 C 0.14 1.83 6.70 -39.00 -0.26 1.57 16 5 C -0.17 -2.06 9.97 -39.50 -0.39 -2.45 16 6 C -0.06 -0.69 9.79 -39.14 -0.38 -1.08 16 7 C -0.11 -1.38 4.53 -105.05 -0.48 -1.86 16 8 C -0.02 -0.23 9.80 -37.19 -0.36 -0.60 16 9 C -0.21 -2.45 9.91 -37.52 -0.37 -2.82 16 10 C 0.53 8.24 6.79 -13.03 -0.09 8.15 16 11 O -0.54 -9.58 12.16 5.17 0.06 -9.52 16 12 N -0.70 -11.55 5.52 -62.94 -0.35 -11.90 16 13 C 0.11 2.02 6.15 -5.19 -0.03 1.99 16 14 C 0.43 9.79 7.85 -10.99 -0.09 9.70 16 15 O -0.60 -15.26 15.24 5.54 0.08 -15.18 16 16 N -0.55 -13.62 5.29 -10.96 -0.06 -13.68 16 17 C -0.31 -8.29 9.68 -14.93 -0.14 -8.43 16 18 H 0.11 2.97 7.16 -52.48 -0.38 2.60 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.89 -23.87 13.05 55.50 0.72 -23.14 16 21 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 C 0.01 0.11 6.59 -39.14 -0.26 -0.14 16 26 C -0.22 -2.88 9.01 -39.50 -0.36 -3.24 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.50 7.65 -51.93 -0.40 0.11 16 31 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 32 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.41 6.63 7.42 -40.82 -0.30 6.33 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 40 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 41 H 0.12 1.61 7.03 -52.49 -0.37 1.24 16 42 H 0.12 1.44 6.27 -52.48 -0.33 1.11 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -32.21 362.59 -7.45 -39.66 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -5.43 Total: 15.56 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.73 Total: 1.38 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.32 Total: -48.73 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.04 Total: -28.80 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.21 -7.45 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492918534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.962 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds