Wall clock time and date at job start Fri Apr 10 2020 18:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47902 * 110.99697 * 2 1 4 4 C 1.53995 * 107.05829 * 145.84165 * 3 2 1 5 5 C 1.54597 * 105.13963 * 358.77333 * 4 3 2 6 6 O 1.42899 * 110.72530 * 96.58071 * 5 4 3 7 7 C 1.53005 * 110.72415 * 219.68321 * 5 4 3 8 8 N 1.46501 * 109.46976 * 177.54900 * 7 5 4 9 9 S 1.65597 * 119.99772 * 165.00203 * 8 7 5 10 10 O 1.42096 * 104.27910 * 308.93046 * 9 8 7 11 11 O 1.42099 * 104.27608 * 181.06949 * 9 8 7 12 12 C 1.81404 * 104.45145 * 64.99829 * 9 8 7 13 13 C 1.52996 * 109.47290 * 172.30241 * 12 9 8 14 14 C 1.50698 * 115.54749 * 40.13132 * 13 12 9 15 15 H 1.07998 * 120.00353 * 269.34696 * 14 13 12 16 16 C 1.37880 * 120.00083 * 89.34763 * 14 13 12 17 17 N 1.31516 * 119.99756 * 352.02330 * 16 14 13 18 18 Si 1.86797 * 119.99951 * 172.01871 * 16 14 13 19 19 H 1.48496 * 109.47368 * 60.00030 * 18 16 14 20 20 H 1.48510 * 109.47005 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47418 * 299.99444 * 18 16 14 22 22 C 1.52997 * 117.50038 * 254.42498 * 13 12 9 23 23 C 1.52999 * 117.49824 * 185.79847 * 13 12 9 24 24 C 1.48736 * 111.04384 * 117.57008 * 2 1 3 25 25 H 1.09002 * 109.46813 * 59.88292 * 1 2 3 26 26 H 1.09001 * 109.46670 * 179.87477 * 1 2 3 27 27 H 1.08991 * 109.47495 * 299.87515 * 1 2 3 28 28 H 1.08999 * 109.92248 * 26.49026 * 3 2 1 29 29 H 1.09003 * 110.08008 * 265.28418 * 3 2 1 30 30 H 1.08999 * 110.31197 * 239.85671 * 4 3 2 31 31 H 1.09006 * 110.38977 * 117.73302 * 4 3 2 32 32 H 0.96693 * 114.00454 * 182.45116 * 6 5 4 33 33 H 1.09001 * 109.46690 * 57.54721 * 7 5 4 34 34 H 1.09001 * 109.46918 * 297.55387 * 7 5 4 35 35 H 0.96995 * 119.99745 * 345.00237 * 8 7 5 36 36 H 1.09003 * 109.46540 * 52.30416 * 12 9 8 37 37 H 1.09000 * 109.47156 * 292.31087 * 12 9 8 38 38 H 0.96999 * 119.99940 * 185.01926 * 17 16 14 39 39 H 1.09002 * 117.49722 * 359.97438 * 22 13 12 40 40 H 1.09001 * 117.50048 * 145.01912 * 22 13 12 41 41 H 1.09001 * 117.50152 * 214.97538 * 23 13 12 42 42 H 1.08996 * 117.49836 * 0.02562 * 23 13 12 43 43 H 1.09006 * 110.83334 * 81.96639 * 24 2 1 44 44 H 1.08997 * 110.58297 * 318.78083 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3808 0.0000 4 6 3.2982 1.3660 0.8266 5 6 3.4491 -0.0928 1.3155 6 8 4.3208 -0.8273 0.4538 7 6 3.9588 -0.1305 2.7577 8 7 4.0359 -1.5211 3.2121 9 16 4.8923 -1.8995 4.5780 10 8 6.1601 -1.2901 4.3768 11 8 4.7672 -3.3105 4.6903 12 6 3.9941 -1.0721 5.9193 13 6 4.5786 -1.5025 7.2661 14 6 6.0799 -1.6240 7.3139 15 1 6.5530 -2.5669 7.0827 16 6 6.8495 -0.5314 7.6530 17 7 6.2907 0.6522 7.7811 18 14 8.6858 -0.7324 7.9304 19 1 9.3204 -1.2473 6.6905 20 1 9.2803 0.5827 8.2808 21 1 8.9168 -1.6919 9.0399 22 6 3.7627 -2.4849 8.1088 23 6 3.8683 -1.0182 8.5317 24 6 2.0031 -0.6425 1.2305 25 1 -0.3633 0.5157 -0.8890 26 1 -0.3633 -1.0277 -0.0022 27 1 -0.3634 0.5118 0.8910 28 1 1.2758 2.0562 0.4571 29 1 2.2116 1.7001 -1.0203 30 1 3.2135 2.0431 1.6767 31 1 4.1478 1.6462 0.2038 32 1 4.4196 -1.7584 0.6951 33 1 3.2743 0.4241 3.3995 34 1 4.9489 0.3227 2.8050 35 1 3.5853 -2.2201 2.7129 36 1 2.9405 -1.3483 5.8755 37 1 4.0913 0.0080 5.8095 38 1 6.8415 1.4331 7.9477 39 1 2.8092 -2.8241 7.7039 40 1 4.3117 -3.2194 8.6980 41 1 4.4868 -0.7879 9.3992 42 1 2.9844 -0.3932 8.4048 43 1 2.0094 -1.7279 1.1297 44 1 1.4243 -0.3395 2.1031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519718070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:27 Heat of formation + Delta-G solvation = -117.568493 kcal Electronic energy + Delta-G solvation = -26180.908711 eV Core-core repulsion = 22453.075785 eV Total energy + Delta-G solvation = -3727.832927 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72108 -38.53542 -37.88046 -37.23416 -36.68062 -35.32407 -34.08904 -32.44914 -29.88852 -29.68770 -27.58718 -27.46077 -25.02897 -22.94265 -22.28472 -21.59104 -21.27269 -20.17771 -18.75858 -18.42915 -17.88396 -17.14997 -16.84291 -16.73069 -16.49966 -16.27092 -15.70195 -15.54936 -15.33567 -14.91824 -14.84620 -14.31458 -14.08597 -13.87971 -13.72965 -13.51764 -13.13557 -13.05639 -12.98046 -12.90590 -12.83893 -12.77033 -12.53136 -12.46552 -12.42777 -12.09541 -12.07687 -11.87923 -11.68466 -11.58506 -10.91123 -10.88768 -10.57333 -10.44158 -9.89266 -9.36956 -8.23563 -6.40694 -0.45539 1.36468 1.40093 1.46007 2.10922 2.38996 2.95288 3.03605 3.06719 3.19062 3.36097 3.52076 3.56999 3.58667 3.85405 3.98715 4.20241 4.23886 4.34528 4.43897 4.50118 4.53257 4.59584 4.60824 4.65974 4.71224 4.77564 4.82679 4.85639 4.88044 5.00301 5.02809 5.10074 5.18098 5.20986 5.42144 5.63351 5.67723 5.84099 6.06692 6.08642 6.20538 6.68210 6.75474 7.36491 8.82780 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019214 B = 0.003924 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.885167 B = 7133.484376 C = 7497.629254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.535 5.535 3 C 0.039 3.961 4 C -0.124 4.124 5 C 0.127 3.873 6 O -0.556 6.556 7 C 0.091 3.909 8 N -1.117 6.117 9 S 2.636 3.364 10 O -0.990 6.990 11 O -1.001 7.001 12 C -0.555 4.555 13 C 0.012 3.988 14 C -0.559 4.559 15 H 0.046 0.954 16 C 0.059 3.941 17 N -0.882 5.882 18 Si 0.924 3.076 19 H -0.280 1.280 20 H -0.271 1.271 21 H -0.265 1.265 22 C -0.191 4.191 23 C -0.137 4.137 24 C 0.009 3.991 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.383 0.617 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.420 0.580 36 H 0.140 0.860 37 H 0.125 0.875 38 H 0.267 0.733 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.825 2.555 -12.732 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.259 5.259 3 C -0.088 4.088 4 C -0.162 4.162 5 C 0.084 3.916 6 O -0.363 6.363 7 C -0.036 4.036 8 N -0.878 5.878 9 S 2.734 3.266 10 O -0.980 6.980 11 O -0.991 6.991 12 C -0.688 4.688 13 C 0.010 3.990 14 C -0.596 4.596 15 H 0.064 0.936 16 C -0.146 4.146 17 N -0.517 5.517 18 Si 0.749 3.251 19 H -0.205 1.205 20 H -0.195 1.195 21 H -0.190 1.190 22 C -0.228 4.228 23 C -0.176 4.176 24 C -0.119 4.119 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.233 0.767 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.256 0.744 36 H 0.158 0.842 37 H 0.143 0.857 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.721 2.664 -13.311 18.603 hybrid contribution 0.304 -0.016 1.313 1.348 sum -12.417 2.647 -11.998 17.468 Atomic orbital electron populations 1.22587 0.86627 1.02764 1.01455 1.64691 1.09165 1.15402 1.36627 1.22877 0.95204 0.89826 1.00922 1.22522 0.99024 0.93403 1.01281 1.22220 0.88765 0.93644 0.86955 1.86534 1.67744 1.26837 1.55170 1.22117 1.03035 0.81994 0.96462 1.55510 1.72521 1.15355 1.44426 1.03954 0.74549 0.73592 0.74539 1.93479 1.40851 1.78931 1.84702 1.93445 1.87416 1.31274 1.87001 1.29856 1.12116 1.13198 1.13597 1.18328 0.91807 1.01197 0.87705 1.20712 0.90558 0.96913 1.51448 0.93551 1.25412 1.01573 0.95011 0.92644 1.69977 1.36699 0.98532 1.46446 0.86129 0.81867 0.78258 0.78812 1.20530 1.19518 1.18965 1.23234 1.01306 0.92834 1.05462 1.22428 1.00815 0.95291 0.99060 1.23985 0.94461 1.00946 0.92480 0.90565 0.90887 0.94616 0.91974 0.90079 0.88081 0.90029 0.76740 0.88617 0.90924 0.74402 0.84226 0.85690 0.92375 0.87927 0.90408 0.91910 0.89374 0.88977 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.40 127.69 1.20 1.39 16 2 N -0.53 -9.49 5.55 -908.61 -5.04 -14.53 16 3 C 0.04 0.63 6.70 86.45 0.58 1.21 16 4 C -0.12 -2.23 6.27 31.47 0.20 -2.04 16 5 C 0.13 2.62 1.04 -9.59 -0.01 2.61 16 6 O -0.56 -13.52 13.11 -148.98 -1.95 -15.47 16 7 C 0.09 2.15 5.19 86.38 0.45 2.60 16 8 N -1.12 -29.39 5.40 -187.48 -1.01 -30.40 16 9 S 2.64 104.18 4.60 -56.49 -0.26 103.92 16 10 O -0.99 -48.71 16.74 -127.65 -2.14 -50.85 16 11 O -1.00 -44.17 18.08 -127.65 -2.31 -46.48 16 12 C -0.55 -21.19 6.18 71.98 0.44 -20.75 16 13 C 0.01 0.54 1.71 -52.93 -0.09 0.45 16 14 C -0.56 -30.73 7.00 25.60 0.18 -30.55 16 15 H 0.05 2.68 7.83 -2.91 -0.02 2.65 16 16 C 0.06 3.23 5.35 84.66 0.45 3.69 16 17 N -0.88 -48.22 12.78 21.45 0.27 -47.94 16 18 Si 0.92 44.54 29.55 68.60 2.03 46.57 16 19 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 22 C -0.19 -7.80 9.88 30.60 0.30 -7.50 16 23 C -0.14 -5.95 9.25 30.60 0.28 -5.66 16 24 C 0.01 0.16 5.20 86.61 0.45 0.61 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.04 0.43 8.01 -2.39 -0.02 0.41 16 28 H 0.06 0.80 7.73 -2.39 -0.02 0.79 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 1.49 7.85 -2.39 -0.02 1.47 16 31 H 0.08 1.61 8.08 -2.38 -0.02 1.59 16 32 H 0.38 7.69 8.26 -74.06 -0.61 7.07 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 2.08 7.69 -2.39 -0.02 2.06 16 35 H 0.42 8.70 7.51 -96.75 -0.73 7.97 16 36 H 0.14 4.04 7.95 -2.39 -0.02 4.02 16 37 H 0.12 4.78 8.14 -2.39 -0.02 4.76 16 38 H 0.27 13.95 8.32 -92.71 -0.77 13.18 16 39 H 0.10 3.46 8.09 -2.39 -0.02 3.44 16 40 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.09 1.47 7.88 -2.38 -0.02 1.46 16 44 H 0.07 1.05 7.87 -2.39 -0.02 1.04 16 Total: -1.00 -72.98 368.50 -6.31 -79.28 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.34 Total: 29.84 kcal Atomic # 6 Polarization: -58.37 SS G_CDS: 4.44 Total: -53.93 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -5.78 Total: -92.88 kcal Atomic # 8 Polarization: -106.40 SS G_CDS: -6.40 Total: -112.80 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 104.18 SS G_CDS: -0.26 Total: 103.92 kcal Total: -72.98 -6.31 -79.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519718070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.286 kcal (2) G-P(sol) polarization free energy of solvation -72.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds