Wall clock time and date at job start Fri Apr 10 2020 18:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47715 * 2 1 4 4 C 1.52999 * 109.47162 * 120.00375 * 2 1 3 5 5 N 1.46502 * 109.47268 * 179.97438 * 4 2 1 6 6 C 1.34775 * 120.00038 * 179.97438 * 5 4 2 7 7 O 1.21588 * 120.00170 * 5.07780 * 6 5 4 8 8 N 1.34780 * 120.00110 * 185.08212 * 6 5 4 9 9 C 1.46920 * 120.62678 * 354.96631 * 8 6 5 10 10 C 1.53189 * 108.89174 * 126.46646 * 9 8 6 11 11 C 1.53039 * 109.31744 * 54.56197 * 10 9 8 12 12 C 1.50695 * 109.46297 * 178.63008 * 11 10 9 13 13 H 1.07994 * 120.00206 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00162 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99861 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00162 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47091 * 90.00366 * 16 14 12 18 18 H 1.48501 * 109.46972 * 210.00099 * 16 14 12 19 19 H 1.48495 * 109.47110 * 330.00005 * 16 14 12 20 20 C 1.53047 * 109.53718 * 298.63797 * 11 10 9 21 21 C 1.46957 * 120.65247 * 174.78812 * 8 6 5 22 22 S 1.81400 * 109.47205 * 240.00108 * 2 1 3 23 23 C 1.81396 * 101.92169 * 59.99985 * 22 2 1 24 24 O 1.42098 * 108.58166 * 174.49036 * 22 2 1 25 25 O 1.42103 * 108.57916 * 305.51323 * 22 2 1 26 26 H 1.09000 * 109.47715 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46855 * 299.99828 * 1 2 3 28 28 H 1.09002 * 109.47219 * 59.99673 * 1 2 3 29 29 H 1.09001 * 109.47601 * 59.99437 * 4 2 1 30 30 H 1.09000 * 109.47070 * 299.99665 * 4 2 1 31 31 H 0.96994 * 120.00055 * 0.02562 * 5 4 2 32 32 H 1.08992 * 109.59100 * 6.60568 * 9 8 6 33 33 H 1.08999 * 109.58561 * 246.32132 * 9 8 6 34 34 H 1.09008 * 109.50031 * 174.51177 * 10 9 8 35 35 H 1.09000 * 109.49795 * 294.57905 * 10 9 8 36 36 H 1.09003 * 109.45754 * 58.65396 * 11 10 9 37 37 H 0.96993 * 119.99924 * 179.97438 * 15 14 12 38 38 H 1.08990 * 109.50032 * 181.31483 * 20 11 10 39 39 H 1.09008 * 109.49375 * 301.41198 * 20 11 10 40 40 H 1.08997 * 109.46830 * 113.75450 * 21 8 6 41 41 H 1.08996 * 109.71624 * 353.45648 * 21 8 6 42 42 H 1.09000 * 109.47301 * 60.00202 * 23 22 2 43 43 H 1.09006 * 109.47284 * 179.97438 * 23 22 2 44 44 H 1.09002 * 109.47417 * 300.00460 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5050 -0.7219 1.2489 6 6 4.1788 -1.3052 2.2599 7 8 3.5745 -1.9107 3.1239 8 7 5.5227 -1.2173 2.3133 9 6 6.2754 -0.5849 1.2214 10 6 7.1776 0.5056 1.8075 11 6 8.0539 -0.0991 2.9069 12 6 8.9666 0.9633 3.4628 13 1 8.9262 1.9689 3.0710 14 6 9.8534 0.6516 4.4716 15 7 9.9030 -0.5731 4.9483 16 14 10.9853 1.9684 5.1601 17 1 10.3168 2.6507 6.2970 18 1 12.2458 1.3405 5.6316 19 1 11.2933 2.9606 4.0991 20 6 7.1655 -0.6449 4.0273 21 6 6.2631 -1.7485 3.4662 22 16 2.1346 -0.8551 -1.4811 23 6 1.4229 0.1515 -2.8118 24 8 3.5496 -0.7331 -1.5285 25 8 1.5479 -2.1485 -1.5285 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6766 -1.7490 1.2492 30 1 1.6767 -0.2075 2.1392 31 1 3.9900 -0.3018 0.5215 32 1 5.5811 -0.1405 0.5084 33 1 6.8870 -1.3335 0.7178 34 1 7.8117 0.9149 1.0210 35 1 6.5615 1.3001 2.2286 36 1 8.6517 -0.9097 2.4900 37 1 10.5270 -0.7925 5.6577 38 1 7.7907 -1.0544 4.8206 39 1 6.5494 0.1603 4.4279 40 1 6.8739 -2.5932 3.1479 41 1 5.5623 -2.0734 4.2352 42 1 1.7894 1.1747 -2.7291 43 1 1.7160 -0.2621 -3.7768 44 1 0.3360 0.1471 -2.7291 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540992216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:35 Heat of formation + Delta-G solvation = -98.322270 kcal Electronic energy + Delta-G solvation = -25860.808139 eV Core-core repulsion = 22133.809791 eV Total energy + Delta-G solvation = -3726.998348 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -39.97528 -37.38775 -37.21287 -36.39345 -35.94445 -33.60827 -32.89645 -30.97995 -30.18784 -29.73676 -26.84738 -25.67288 -23.15446 -22.87698 -22.03953 -20.20092 -19.29557 -18.73730 -17.71679 -17.54254 -16.47110 -16.44422 -16.23573 -15.84203 -15.19110 -14.80045 -14.53155 -14.00941 -13.85486 -13.76379 -13.61101 -13.41540 -13.14285 -12.98580 -12.74004 -12.61982 -12.47722 -12.39614 -12.30255 -12.13005 -11.88495 -11.69829 -11.39833 -11.07037 -10.90803 -10.66749 -10.62201 -10.36310 -10.01770 -9.77182 -9.50860 -9.13641 -9.05827 -8.84607 -8.32805 -7.83864 -5.97915 -4.04566 -0.46620 2.27901 2.89480 3.20677 3.30959 3.38030 3.40463 3.54332 3.59030 3.97458 4.06320 4.29638 4.34400 4.44167 4.53238 4.59959 4.92429 5.07561 5.19382 5.31576 5.38132 5.48469 5.52615 5.55992 5.88698 5.93366 6.14354 6.32885 6.47559 6.52810 6.57579 6.69319 6.87134 7.03940 7.16992 7.29171 7.52924 7.75211 7.98523 8.10679 8.32067 8.44851 8.94785 8.98792 9.60117 11.07453 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.003023 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.714599 B = 9260.006322 C = 9666.517497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.589 4.589 3 H 0.144 0.856 4 C 0.155 3.845 5 N -0.769 5.769 6 C 0.708 3.292 7 O -0.600 6.600 8 N -0.615 5.615 9 C 0.109 3.891 10 C -0.123 4.123 11 C 0.048 3.952 12 C -0.513 4.513 13 H 0.054 0.946 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.891 3.109 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.123 4.123 21 C 0.126 3.874 22 S 2.416 3.584 23 C -0.659 4.659 24 O -0.931 6.931 25 O -0.929 6.929 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.405 0.595 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.028 0.972 37 H 0.260 0.740 38 H 0.104 0.896 39 H 0.037 0.963 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.495 3.080 -14.816 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.698 4.698 3 H 0.162 0.838 4 C 0.029 3.971 5 N -0.433 5.433 6 C 0.410 3.590 7 O -0.479 6.479 8 N -0.350 5.350 9 C -0.015 4.015 10 C -0.162 4.162 11 C 0.030 3.970 12 C -0.551 4.551 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.162 4.162 21 C 0.004 3.996 22 S 2.596 3.404 23 C -0.808 4.808 24 O -0.928 6.928 25 O -0.926 6.926 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.246 0.754 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.271 1.788 -14.111 23.951 hybrid contribution 0.432 1.838 0.038 1.888 sum -18.838 3.625 -14.072 23.792 Atomic orbital electron populations 1.21644 0.88804 1.04790 1.04711 1.30355 1.07737 1.14108 1.17586 0.83767 1.20829 0.80164 1.00880 0.95232 1.45657 1.06078 1.64013 1.27599 1.15759 0.82041 0.79559 0.81637 1.90862 1.67871 1.47987 1.41229 1.47453 1.03448 1.61301 1.22845 1.21788 0.94896 0.96429 0.88353 1.22017 0.97694 0.96538 0.99918 1.18636 0.91989 0.95750 0.90634 1.21190 1.18849 0.96100 1.18946 0.92770 1.24971 0.97106 0.95299 0.96639 1.69846 1.37099 1.18134 1.27785 0.86618 0.80318 0.81914 0.79259 1.20800 1.21283 1.20017 1.22033 0.96509 0.95848 1.01761 1.21800 0.94155 0.97283 0.86367 1.08269 0.76323 0.77336 0.78442 1.30324 1.14119 1.16680 1.19702 1.93574 1.26835 1.86945 1.85418 1.93606 1.79273 1.34253 1.85486 0.89925 0.89613 0.90846 0.89849 0.89314 0.75382 0.91588 0.91664 0.92072 0.92991 0.95367 0.92969 0.87786 0.94419 0.92456 0.90569 0.85112 0.85052 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 93. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.58 8.94 37.16 0.33 -0.25 16 2 C -0.59 -3.84 2.88 -26.73 -0.08 -3.91 16 3 H 0.14 0.57 8.14 -51.92 -0.42 0.15 16 4 C 0.15 1.75 5.12 -4.04 -0.02 1.73 16 5 N -0.77 -11.45 5.07 -65.22 -0.33 -11.78 16 6 C 0.71 13.69 8.30 -86.92 -0.72 12.97 16 7 O -0.60 -13.25 15.79 5.29 0.08 -13.16 16 8 N -0.61 -12.09 2.98 -178.48 -0.53 -12.62 16 9 C 0.11 1.94 6.43 -3.72 -0.02 1.92 16 10 C -0.12 -2.48 5.30 -26.61 -0.14 -2.63 16 11 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 12 C -0.51 -13.81 8.56 -34.44 -0.29 -14.11 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 15 N -0.89 -25.05 11.30 55.43 0.63 -24.42 16 16 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.12 -2.92 5.15 -26.60 -0.14 -3.05 16 21 C 0.13 2.67 6.41 -3.69 -0.02 2.64 16 22 S 2.42 19.41 4.76 -107.50 -0.51 18.90 16 23 C -0.66 -2.30 10.17 101.05 1.03 -1.27 16 24 O -0.93 -10.80 15.82 -57.83 -0.91 -11.72 16 25 O -0.93 -10.91 17.91 -57.83 -1.04 -11.95 16 26 H 0.08 0.38 8.06 -51.93 -0.42 -0.04 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.09 6.56 -51.93 -0.34 -0.25 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.41 5.52 3.76 -40.82 -0.15 5.37 16 32 H 0.07 1.02 5.56 -51.93 -0.29 0.73 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.10 2.73 6.03 -51.93 -0.31 2.42 16 39 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.63 7.05 -51.93 -0.37 1.27 16 42 H 0.13 0.21 8.14 -51.92 -0.42 -0.22 16 43 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 44 H 0.13 0.18 6.87 -51.92 -0.36 -0.18 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -36.23 356.76 -9.47 -45.70 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.85 Total: 2.99 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.36 Total: -3.41 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.24 Total: -48.83 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.87 Total: -36.82 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 19.41 SS G_CDS: -0.51 Total: 18.90 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.23 -9.47 -45.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540992216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.619 kcal (2) G-P(sol) polarization free energy of solvation -36.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds